tests.yml

name: 'Tests'
concurrency:
  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
  cancel-in-progress: true
on:  # yamllint disable-line rule:truthy
  push:
    branches:
      - '*'
  pull_request:
    branches:
      - '*'

permissions:
  contents: read

jobs:
  style:
    name: Style
    runs-on: ubuntu-latest
    timeout-minutes: 3
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: '3.11'
      - uses: pre-commit/action@v3.0.1

  bandit:
    name: Bandit
    needs: style
    runs-on: ubuntu-latest
    steps:
      - uses: davidslusser/actions_python_bandit@v1.0.0
        with:
          src: "mne"
          options: "-c pyproject.toml -ll -r"
          pip_install_command: "pip install bandit[toml]"

  pytest:
    name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.python }}'
    needs: style
    timeout-minutes: 70
    continue-on-error: true
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -el {0}
    env:
      PYTHON_VERSION: '${{ matrix.python }}'
      MKL_NUM_THREADS: '1'
      OPENBLAS_NUM_THREADS: '1'
      PYTHONUNBUFFERED: '1'
      MNE_CI_KIND: '${{ matrix.kind }}'
      CI_OS_NAME: '${{ matrix.os }}'
    strategy:
      matrix:
        include:
          - os: ubuntu-latest
            python: '3.11'
            kind: pip-pre
          - os: ubuntu-latest
            python: '3.12'
            kind: conda
          # 3.12 needs https://github.com/conda-forge/dipy-feedstock/pull/50
          - os: macos-14  # arm64
            python: '3.11'
            kind: mamba
          - os: macos-latest  # intel
            python: '3.11'
            kind: mamba
          - os: windows-latest
            python: '3.10'
            kind: mamba
          - os: ubuntu-latest
            python: '3.9'
            kind: minimal
          - os: ubuntu-20.04
            python: '3.9'
            kind: old
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - run: ./tools/github_actions_env_vars.sh
      # Xvfb/OpenGL
      - uses: pyvista/setup-headless-display-action@main
        with:
          qt: true
          pyvista: false
      # Python (if pip)
      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python }}
        if: startswith(matrix.kind, 'pip')
      # Python (if conda)
      - name: Remove numba and dipy
        run: |  # TODO: Remove when numba 0.59 and dipy 1.8 land on conda-forge
          sed -i '/numba/d' environment.yml
          sed -i '/dipy/d' environment.yml
          sed -i 's/- mne$/- mne-base/' environment.yml
        if: matrix.os == 'ubuntu-latest' && startswith(matrix.kind, 'conda') && matrix.python == '3.12'
      - uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: ${{ env.CONDA_ENV }}
          environment-name: mne
          create-args: >-
            python=${{ env.PYTHON_VERSION }}
            mamba
            fmt!=10.2.0
        if: ${{ !startswith(matrix.kind, 'pip') }}
      # Make sure we have the right Python
      - run: python -c "import platform; assert platform.machine() == 'arm64', platform.machine()"
        if: matrix.os == 'macos-14'
      - run: ./tools/github_actions_dependencies.sh
      # Minimal commands on Linux (macOS stalls)
      - run: ./tools/get_minimal_commands.sh
        if: ${{ startswith(matrix.os, 'ubuntu') }}
      - run: ./tools/github_actions_infos.sh
      # Check Qt
      - run: ./tools/check_qt_import.sh $MNE_QT_BACKEND
        if: ${{ env.MNE_QT_BACKEND != '' }}
      - name: Run tests with no testing data
        run: MNE_SKIP_TESTING_DATASET_TESTS=true pytest -m "not (ultraslowtest or pgtest)" --tb=short --cov=mne --cov-report xml -vv -rfE mne/
        if: matrix.kind == 'minimal'
      - run: ./tools/get_testing_version.sh
      - uses: actions/cache@v4
        with:
          key: ${{ env.TESTING_VERSION }}
          path: ~/mne_data
      - run: ./tools/github_actions_download.sh
      - run: ./tools/github_actions_test.sh
      - uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
        if: success()