From a030157f96792765f6d46089834b938a6210d3c0 Mon Sep 17 00:00:00 2001
From: Alex Pickering <alexvpickering@gmail.com>
Date: Fri, 13 Sep 2024 11:37:29 -0700
Subject: [PATCH] gentler warning

Signed-off-by: Alex Pickering <alexvpickering@gmail.com>
---
 src/utils/upload/fileUploadUtils.js | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/utils/upload/fileUploadUtils.js b/src/utils/upload/fileUploadUtils.js
index d8cb8010b..9f92c1279 100644
--- a/src/utils/upload/fileUploadUtils.js
+++ b/src/utils/upload/fileUploadUtils.js
@@ -116,8 +116,8 @@ const fileUploadUtils = {
     inputInfo: [
       ['<code>scdata$samples</code>: sample assignment. If absent, treated as unisample.'],
       ['<code>scdata[[\'RNA\']]@counts</code>: raw feature counts.'],
-      ['<code>scdata@reductions</code>: contains the embeddings for <code>pca</code>, as well as either <code>umap</code> or <code>tsne</code>.'],
-      ['<strong>Important notes on dimensionality reductions:</strong> ensure the default dimensionality reduction in your Seurat object is named exactly <code>umap</code> or <code>tsne</code>. If the default reduction name includes <code>umap</code> or <code>tsne</code> (e.g., <code>ref.umap</code>), it will be automatically renamed. If the default reduction is different and does not contain these names, the upload will not be successful.'],
+      ['<code>scdata@reductions</code>: includes a <code>pca</code> reduction.'],
+      ['<code>DefaultDimReduc(scdata)</code>: includes either <code>umap</code> or <code>tsne</code> (e.g. <code>ref.umap</code> will work).'],
       ['\uD83D\uDCA1cluster metadata in <code>scdata@meta.data</code> is auto-detected.'],
       ['\uD83D\uDCA1sample level metadata in <code>scdata@meta.data</code> that groups samples in <code>scdata$samples</code> is auto-detected for downstream analysis.'],
       ['\uD83D\uDCA1if file size is over 15GB, try removing any assays not indicated above.'],