diff --git a/pipeline-runner/renv.lock b/pipeline-runner/renv.lock
index 5bb4e6f7..2c5f6205 100644
--- a/pipeline-runner/renv.lock
+++ b/pipeline-runner/renv.lock
@@ -77,10 +77,10 @@
     },
     "BiocManager": {
       "Package": "BiocManager",
-      "Version": "1.30.18",
+      "Version": "1.30.22",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "b1a93bed5debda5775636086fdca017b",
+      "Hash": "d57e43105a1aa9cb54fdb4629725acb1",
       "Requirements": []
     },
     "BiocNeighbors": {
@@ -411,6 +411,12 @@
       "Version": "2.5.1",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "R6",
+      "RemoteRef": "R6",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "2.5.1",
       "Hash": "470851b6d5d0ac559e9d01bb352b4021",
       "Requirements": []
     },
@@ -980,6 +986,12 @@
       "Version": "3.7.3",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "callr",
+      "RemoteRef": "callr",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "3.7.3",
       "Hash": "9b2191ede20fa29828139b9900922e51",
       "Requirements": [
         "R6",
@@ -991,6 +1003,12 @@
       "Version": "3.6.1",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "cli",
+      "RemoteRef": "cli",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "3.6.1",
       "Hash": "89e6d8219950eac806ae0c489052048a",
       "Requirements": []
     },
@@ -1065,10 +1083,16 @@
     },
     "crayon": {
       "Package": "crayon",
-      "Version": "1.5.1",
+      "Version": "1.5.2",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "8dc45fd8a1ee067a92b85ef274e66d6a",
+      "RemoteType": "standard",
+      "RemotePkgRef": "crayon",
+      "RemoteRef": "crayon",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.5.2",
+      "Hash": "e8a1e41acf02548751f45c718d55aa6a",
       "Requirements": []
     },
     "crosstalk": {
@@ -1113,6 +1137,12 @@
       "Version": "1.4.2",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "desc",
+      "RemoteRef": "desc",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.4.2",
       "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21",
       "Requirements": [
         "R6",
@@ -1256,10 +1286,16 @@
     },
     "fs": {
       "Package": "fs",
-      "Version": "1.5.2",
+      "Version": "1.6.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "7c89603d81793f0d5486d91ab1fc6f1d",
+      "RemoteType": "standard",
+      "RemotePkgRef": "fs",
+      "RemoteRef": "fs",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.6.3",
+      "Hash": "47b5f30c720c23999b913a1a635cf0bb",
       "Requirements": []
     },
     "futile.logger": {
@@ -1406,6 +1442,12 @@
       "Version": "1.6.2",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "glue",
+      "RemoteRef": "glue",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.6.2",
       "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e",
       "Requirements": []
     },
@@ -2066,6 +2108,12 @@
       "Version": "1.4.2",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "pkgbuild",
+      "RemoteRef": "pkgbuild",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.4.2",
       "Hash": "beb25b32a957a22a5c301a9e441190b3",
       "Requirements": [
         "R6",
@@ -2134,6 +2182,12 @@
       "Version": "1.3.3",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "pkgload",
+      "RemoteRef": "pkgload",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.3.3",
       "Hash": "903d68319ae9923fb2e2ee7fa8230b91",
       "Requirements": [
         "cli",
@@ -2213,10 +2267,16 @@
     },
     "prettyunits": {
       "Package": "prettyunits",
-      "Version": "1.1.1",
+      "Version": "1.2.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "95ef9167b75dde9d2ccc3c7528393e7e",
+      "RemoteType": "standard",
+      "RemotePkgRef": "prettyunits",
+      "RemoteRef": "prettyunits",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.2.0",
+      "Hash": "6b01fc98b1e86c4f705ce9dcfd2f57c7",
       "Requirements": []
     },
     "processx": {
@@ -2224,6 +2284,12 @@
       "Version": "3.8.2",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "processx",
+      "RemoteRef": "processx",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "3.8.2",
       "Hash": "3efbd8ac1be0296a46c55387aeace0f3",
       "Requirements": [
         "R6",
@@ -2259,6 +2325,12 @@
       "Version": "1.7.5",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "ps",
+      "RemoteRef": "ps",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.7.5",
       "Hash": "709d852d33178db54b17c722e5b1e594",
       "Requirements": []
     },
@@ -2368,9 +2440,11 @@
     "rgeos": {
       "Package": "rgeos",
       "Version": "0.5-9",
-      "Source": "Repository",
+      "Source": "URL",
       "Repository": "CRAN",
-      "Hash": "7cfa4f73a070042ecf141d5c1d1bfcae",
+      "RemoteType": "url",
+      "RemoteUrl": "https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.5-9.tar.gz",
+      "Hash": "39b3cf09bd12b71e67066e5fe17683f1",
       "Requirements": [
         "sp"
       ]
@@ -2415,6 +2489,12 @@
       "Version": "1.1.1",
       "Source": "Repository",
       "Repository": "CRAN",
+      "RemoteType": "standard",
+      "RemotePkgRef": "rlang",
+      "RemoteRef": "rlang",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "1.1.1",
       "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb",
       "Requirements": []
     },
@@ -2428,10 +2508,16 @@
     },
     "rprojroot": {
       "Package": "rprojroot",
-      "Version": "2.0.2",
+      "Version": "2.0.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "249d8cd1e74a8f6a26194a91b47f21d1",
+      "RemoteType": "standard",
+      "RemotePkgRef": "rprojroot",
+      "RemoteRef": "rprojroot",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "2.0.3",
+      "Hash": "1de7ab598047a87bba48434ba35d497d",
       "Requirements": []
     },
     "rsvd": {
@@ -3036,10 +3122,16 @@
     },
     "withr": {
       "Package": "withr",
-      "Version": "2.5.0",
+      "Version": "2.5.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "c0e49a9760983e81e55cdd9be92e7182",
+      "RemoteType": "standard",
+      "RemotePkgRef": "withr",
+      "RemoteRef": "withr",
+      "RemoteRepos": "https://cran.rstudio.com",
+      "RemotePkgPlatform": "x86_64-apple-darwin17.0",
+      "RemoteSha": "2.5.1",
+      "Hash": "d77c6f74be05c33164e33fbc85540cae",
       "Requirements": []
     },
     "xgboost": {
diff --git a/pipeline-runner/renv.lock.init b/pipeline-runner/renv.lock.init
index eb138a0c..96e7cc1d 100644
--- a/pipeline-runner/renv.lock.init
+++ b/pipeline-runner/renv.lock.init
@@ -2371,9 +2371,11 @@
     "rgeos": {
       "Package": "rgeos",
       "Version": "0.5-9",
-      "Source": "Repository",
+      "Source": "URL",
       "Repository": "CRAN",
-      "Hash": "7cfa4f73a070042ecf141d5c1d1bfcae",
+      "RemoteType": "url",
+      "RemoteUrl": "https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.5-9.tar.gz",
+      "Hash": "39b3cf09bd12b71e67066e5fe17683f1",
       "Requirements": [
         "sp"
       ]