From b23ffae0e83a0d2f0b07a0a39d9fd377a8911d7d Mon Sep 17 00:00:00 2001
From: Alex Pickering <alexvpickering@gmail.com>
Date: Thu, 19 Sep 2024 12:13:33 -0700
Subject: [PATCH] rename last params to seurat_object

Signed-off-by: Alex Pickering <alexvpickering@gmail.com>
---
 ...0240918171424_rename_last_params_seurat.js | 25 +++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 src/sql/migrations/20240918171424_rename_last_params_seurat.js

diff --git a/src/sql/migrations/20240918171424_rename_last_params_seurat.js b/src/sql/migrations/20240918171424_rename_last_params_seurat.js
new file mode 100644
index 000000000..fbfab6227
--- /dev/null
+++ b/src/sql/migrations/20240918171424_rename_last_params_seurat.js
@@ -0,0 +1,25 @@
+/**
+ * @param { import("knex").Knex } knex
+ * @returns { Promise<void> }
+ */
+exports.up = async (knex) => {
+  // Update the last_pipeline_params to set sampleTechnology to seurat_object where it is currently seurat
+  await knex('experiment_execution')
+    .where({ pipeline_type: 'obj2s' })
+    .update({
+      last_pipeline_params: knex.raw("jsonb_set(last_pipeline_params::jsonb, '{sampleTechnology}', '\"seurat_object\"'::jsonb)"),
+    });
+};
+
+/**
+ * @param { import("knex").Knex } knex
+ * @returns { Promise<void> }
+ */
+exports.down = async (knex) => {
+  // Revert sampleTechnology back to seurat
+  await knex('experiment_execution')
+    .where({ pipeline_type: 'obj2s' })
+    .update({
+      last_pipeline_params: knex.raw("jsonb_set(last_pipeline_params::jsonb, '{sampleTechnology}', '\"seurat\"'::jsonb)"),
+    });
+};