diff --git a/package-lock.json b/package-lock.json
index a7847f3cd..865cd8b0e 100644
--- a/package-lock.json
+++ b/package-lock.json
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         "@types/node": {
-          "version": "17.0.23",
-          "resolved": "https://registry.npmjs.org/@types/node/-/node-17.0.23.tgz",
-          "integrity": "sha512-UxDxWn7dl97rKVeVS61vErvw086aCYhDLyvRQZ5Rk65rZKepaFdm53GeqXaKBuOhED4e9uWq34IC3TdSdJJ2Gw=="
+          "version": "17.0.24",
+          "resolved": "https://registry.npmjs.org/@types/node/-/node-17.0.24.tgz",
+          "integrity": "sha512-aveCYRQbgTH9Pssp1voEP7HiuWlD2jW2BO56w+bVrJn04i61yh6mRfoKO6hEYQD9vF+W8Chkwc6j1M36uPkx4g=="
         },
         "debug": {
           "version": "4.3.4",
@@ -13139,9 +13133,9 @@
           }
         },
         "semver": {
-          "version": "7.3.5",
-          "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.5.tgz",
-          "integrity": "sha512-PoeGJYh8HK4BTO/a9Tf6ZG3veo/A7ZVsYrSA6J8ny9nb3B1VrpkuN+z9OE5wfE5p6H4LchYZsegiQgbJD94ZFQ==",
+          "version": "7.3.7",
+          "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz",
+          "integrity": "sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g==",
           "dev": true,
           "requires": {
             "lru-cache": "^6.0.0"
diff --git a/src/api.v2/controllers/experimentController.js b/src/api.v2/controllers/experimentController.js
index df68fb284..01d0e4b0f 100644
--- a/src/api.v2/controllers/experimentController.js
+++ b/src/api.v2/controllers/experimentController.js
@@ -53,13 +53,13 @@ const createExperiment = async (req, res) => {
 const patchExperiment = async (req, res) => {
   const { params: { experimentId }, body } = req;
 
-  logger.log(`Updating experiment ${experimentId}`);
+  logger.log(`Patching experiment ${experimentId}`);
 
   const snakeCasedKeysToPatch = _.mapKeys(body, (_value, key) => _.snakeCase(key));
 
   await new Experiment().updateById(experimentId, snakeCasedKeysToPatch);
 
-  logger.log(`Finished updating experiment ${experimentId}`);
+  logger.log(`Finished patching experiment ${experimentId}`);
 
   res.json(OK());
 };
@@ -86,6 +86,22 @@ const updateSamplePosition = async (req, res) => {
   res.json(OK());
 };
 
+const getProcessingConfig = async (req, res) => {
+  const { params: { experimentId } } = req;
+  logger.log('Getting processing config for experiment ', experimentId);
+
+  const result = await new Experiment().getProcessingConfig(experimentId);
+  res.json(result);
+};
+
+const updateProcessingConfig = async (req, res) => {
+  const { params: { experimentId }, body } = req;
+  logger.log('Updating processing config for experiment ', experimentId);
+
+  await new Experiment().updateProcessingConfig(experimentId, body);
+  res.json(OK());
+};
+
 const getBackendStatus = async (req, res) => {
   const { experimentId } = req.params;
 
@@ -114,7 +130,9 @@ module.exports = {
   getAllExperiments,
   getExperiment,
   createExperiment,
+  updateProcessingConfig,
   patchExperiment,
   updateSamplePosition,
+  getProcessingConfig,
   getBackendStatus,
 };
diff --git a/src/api.v2/controllers/sampleController.js b/src/api.v2/controllers/sampleController.js
index 03521f2be..e2898a612 100644
--- a/src/api.v2/controllers/sampleController.js
+++ b/src/api.v2/controllers/sampleController.js
@@ -1,3 +1,5 @@
+const _ = require('lodash');
+
 const Sample = require('../model/Sample');
 const Experiment = require('../model/Experiment');
 const MetadataTrack = require('../model/MetadataTrack');
@@ -36,9 +38,25 @@ const createSample = async (req, res) => {
   res.json(OK());
 };
 
+const patchSample = async (req, res) => {
+  const { params: { experimentId, sampleId }, body } = req;
+
+  logger.log(`Patching sample ${sampleId} in experiment ${experimentId}`);
+
+  const snakeCasedKeysToPatch = _.mapKeys(body, (_value, key) => _.snakeCase(key));
+
+  await new Sample().updateById(sampleId, snakeCasedKeysToPatch);
+
+  logger.log(`Finished patching sample ${sampleId} in experiment ${experimentId}`);
+
+  res.json(OK());
+};
+
 const deleteSample = async (req, res) => {
   const { params: { experimentId, sampleId } } = req;
 
+  logger.log(`Deleting sample ${sampleId} from experiment ${experimentId}`);
+
   await sqlClient.get().transaction(async (trx) => {
     await new Sample(trx).destroy(sampleId);
     await new Experiment(trx).deleteSample(experimentId, sampleId);
@@ -51,5 +69,6 @@ const deleteSample = async (req, res) => {
 
 module.exports = {
   createSample,
+  patchSample,
   deleteSample,
 };
diff --git a/src/api.v2/model/Experiment.js b/src/api.v2/model/Experiment.js
index 667e77f1c..5bff9470e 100644
--- a/src/api.v2/model/Experiment.js
+++ b/src/api.v2/model/Experiment.js
@@ -143,6 +143,25 @@ class Experiment extends BasicModel {
     }
   }
 
+  async getProcessingConfig(experimentId) {
+    const result = await this.findOne({ id: experimentId });
+    if (_.isEmpty(result)) {
+      throw new NotFoundError('Experiment not found');
+    }
+
+    return result.processingConfig;
+  }
+
+  async updateProcessingConfig(experimentId, body) {
+    const { name: stepName, body: change } = body[0];
+    const updateString = JSON.stringify({ [stepName]: change });
+
+    await this.sql(tableNames.EXPERIMENT)
+      .update({
+        processing_config: this.sql.raw(`processing_config || '${updateString}'::jsonb`),
+      }).where('id', experimentId);
+  }
+
   async addSample(experimentId, sampleId) {
     await this.sql(tableNames.EXPERIMENT)
       .update({
diff --git a/src/api.v2/model/__mocks__/Experiment.js b/src/api.v2/model/__mocks__/Experiment.js
index cfc4dd365..351c445db 100644
--- a/src/api.v2/model/__mocks__/Experiment.js
+++ b/src/api.v2/model/__mocks__/Experiment.js
@@ -4,6 +4,8 @@ const stub = {
   getAllExperiments: jest.fn(),
   getExperimentData: jest.fn(),
   updateSamplePosition: jest.fn(),
+  updateProcessingConfig: jest.fn(),
+  getProcessingConfig: jest.fn(),
   addSample: jest.fn(),
   deleteSample: jest.fn(),
   ...BasicModel,
diff --git a/src/api.v2/routes/experiment.js b/src/api.v2/routes/experiment.js
index 982a39b53..56bff2043 100644
--- a/src/api.v2/routes/experiment.js
+++ b/src/api.v2/routes/experiment.js
@@ -1,6 +1,6 @@
 const {
-  createExperiment, getExperiment, patchExperiment, getAllExperiments,
-  updateSamplePosition, getBackendStatus,
+  createExperiment, getExperiment, patchExperiment, updateSamplePosition,
+  getAllExperiments, getProcessingConfig, updateProcessingConfig, getBackendStatus,
 } = require('../controllers/experimentController');
 
 const { expressAuthenticationOnlyMiddleware, expressAuthorizationMiddleware } = require('../middlewares/authMiddlewares');
@@ -26,6 +26,14 @@ module.exports = {
     expressAuthorizationMiddleware,
     (req, res, next) => updateSamplePosition(req, res).catch(next),
   ],
+  'experiment#getProcessingConfig': [
+    expressAuthorizationMiddleware,
+    (req, res, next) => getProcessingConfig(req, res).catch(next),
+  ],
+  'experiment#updateProcessingConfig': [
+    expressAuthorizationMiddleware,
+    (req, res, next) => updateProcessingConfig(req, res).catch(next),
+  ],
   'experiment#getBackendStatus': [
     expressAuthorizationMiddleware,
     (req, res, next) => getBackendStatus(req, res).catch(next),
diff --git a/src/api.v2/routes/sample.js b/src/api.v2/routes/sample.js
index 9f09cba17..872b8bf6e 100644
--- a/src/api.v2/routes/sample.js
+++ b/src/api.v2/routes/sample.js
@@ -1,5 +1,6 @@
 const {
   createSample,
+  patchSample,
   deleteSample,
 } = require('../controllers/sampleController');
 
@@ -10,6 +11,10 @@ module.exports = {
     expressAuthorizationMiddleware,
     (req, res, next) => createSample(req, res).catch(next),
   ],
+  'sample#patchSample': [
+    expressAuthorizationMiddleware,
+    (req, res, next) => patchSample(req, res).catch(next),
+  ],
   'sample#deleteSample': [
     expressAuthorizationMiddleware,
     (req, res, next) => deleteSample(req, res).catch(next),
diff --git a/src/specs/api.v2.yaml b/src/specs/api.v2.yaml
index 39f2ba18f..3205aed86 100644
--- a/src/specs/api.v2.yaml
+++ b/src/specs/api.v2.yaml
@@ -58,6 +58,71 @@ paths:
                   - env
                   - clusterEnv
       description: Returns a status on the health of the API.
+  '/experiments/{experimentId}/processingConfig':
+    get:
+      summary: Get processing configuration for an experiment
+      description: Get processing configuration for an experiment
+      operationId: getProcessingConfig
+      x-eov-operation-id: experiment#getProcessingConfig
+      x-eov-operation-handler: routes/experiment
+      responses:
+        '200':
+          description: get processing configuration for an experiment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/ProcessingConfig'
+        '400':
+          description: Bad Request
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'        
+        '401':
+          description: The request lacks authentication credentials.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'        
+        '404':
+          description: Not found error.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        
+    put:
+      summary: Update processing configuration for an experiment
+      description: Update processing configuration for an experiment
+      operationId: updateProcessingConfig
+      x-eov-operation-id: experiment#updateProcessingConfig
+      x-eov-operation-handler: routes/experiment
+      responses:
+        '200':
+          description: Processing configuration for an experiment
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPSuccess'
+        '400':
+          description: Bad Request
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        '401':
+          description: The request lacks authentication credentials.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        '404':
+          description: Not found error.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        
   '/experiments':
     get:
       summary: Get all experiments
@@ -168,7 +233,7 @@ paths:
         content:
           application/json:
             schema:
-              $ref: '#/components/schemas/ExperimentPatch'
+              $ref: '#/components/schemas/PatchExperiment'
       responses:
         '200':
           description: Create experiment
@@ -283,6 +348,52 @@ paths:
             application/json:
               schema:
                 $ref: '#/components/schemas/HTTPError'
+    patch:
+      summary: Patch sample
+      operationId: patchSample
+      x-eov-operation-id: sample#patchSample
+      x-eov-operation-handler: routes/sample
+      requestBody:
+        content:
+          application/json:
+            schema:
+              type: object
+              properties:
+                name:
+                  type: string
+              additionalProperties: false
+      responses:
+        '200':
+          description: Success
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPSuccess'
+        '400':
+          description: Bad Request
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        '401':
+          description: The request lacks authentication credentials.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        '403':
+          description: Forbidden request for this user.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+        '404':
+          description: Not found error.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/HTTPError'
+
     delete:
       summary: Delete sample
       operationId: deleteSample
@@ -371,14 +482,17 @@ paths:
             application/json:
               schema:
                 $ref: '#/components/schemas/HTTPError'
+
 components:
   schemas:
     CreateExperiment:
       $ref: './models/experiment-bodies/CreateExperiment.v2.yaml'
     ExperimentInfo:
       $ref: './models/experiment-bodies/ExperimentInfo.v2.yaml'
-    ExperimentPatch:
-      $ref: './models/experiment-bodies/ExperimentPatch.v2.yaml'
+    PatchExperiment:
+      $ref: './models/experiment-bodies/PatchExperiment.v2.yaml'
+    ProcessingConfig:
+      $ref: './models/experiment-bodies/ProcessingConfig.v2.yaml'
     GetAllExperiments:
       $ref: './models/experiment-bodies/GetAllExperiments.v2.yaml'
     CreateSample:
diff --git a/src/specs/models/experiment-bodies/ExperimentPatch.v2.yaml b/src/specs/models/experiment-bodies/PatchExperiment.v2.yaml
similarity index 89%
rename from src/specs/models/experiment-bodies/ExperimentPatch.v2.yaml
rename to src/specs/models/experiment-bodies/PatchExperiment.v2.yaml
index 7ebbd8520..a99124eb1 100644
--- a/src/specs/models/experiment-bodies/ExperimentPatch.v2.yaml
+++ b/src/specs/models/experiment-bodies/PatchExperiment.v2.yaml
@@ -1,4 +1,4 @@
-title: Experiment Patch
+title: Patch Experiment 
 description: The properties of an experiment that can be patched
 type: object
 properties:
diff --git a/src/specs/models/experiment-bodies/ProcessingConfig.v2.yaml b/src/specs/models/experiment-bodies/ProcessingConfig.v2.yaml
index 42288d940..f0c61678d 100644
--- a/src/specs/models/experiment-bodies/ProcessingConfig.v2.yaml
+++ b/src/specs/models/experiment-bodies/ProcessingConfig.v2.yaml
@@ -25,4 +25,4 @@ required:
   - numGenesVsNumUmis
   - doubletScores
   - dataIntegration
-  - configureEmbedding
\ No newline at end of file
+  - configureEmbedding
diff --git a/tests/api.v2/controllers/experimentController.test.js b/tests/api.v2/controllers/experimentController.test.js
index 7a4b796a1..bc689c6ba 100644
--- a/tests/api.v2/controllers/experimentController.test.js
+++ b/tests/api.v2/controllers/experimentController.test.js
@@ -177,6 +177,38 @@ describe('experimentController', () => {
     expect(experimentInstance.updateSamplePosition).not.toHaveBeenCalled();
   });
 
+  it('getProcessingConfig works', async () => {
+    const mockReq = {
+      params: {
+        experimentId: mockExperiment.id,
+      },
+    };
+    experimentInstance.getProcessingConfig.mockImplementationOnce(() => Promise.resolve());
+
+    await experimentController.getProcessingConfig(mockReq, mockRes);
+    expect(experimentInstance.getProcessingConfig).toHaveBeenCalledWith(mockExperiment.id);
+  });
+
+  it('updateProcessingConfig works', async () => {
+    const mockReq = {
+      params: {
+        experimentId: mockExperiment.id,
+      },
+      body: [{
+        name: 'classifier',
+        body: {
+          someChangedField: 'a value',
+        },
+      }],
+    };
+    experimentInstance.updateProcessingConfig.mockImplementationOnce(() => Promise.resolve());
+
+    await experimentController.updateProcessingConfig(mockReq, mockRes);
+    expect(experimentInstance.updateProcessingConfig).toHaveBeenCalledWith(
+      mockExperiment.id, mockReq.body,
+    );
+  });
+
   it('getBackendStatus works correctly', async () => {
     getPipelineStatus
       .mockImplementationOnce(() => Promise.resolve('gem2sStatus'))
diff --git a/tests/api.v2/controllers/sampleController.test.js b/tests/api.v2/controllers/sampleController.test.js
index d8b9db81f..76782ff86 100644
--- a/tests/api.v2/controllers/sampleController.test.js
+++ b/tests/api.v2/controllers/sampleController.test.js
@@ -123,4 +123,22 @@ describe('sampleController', () => {
 
     expect(mockRes.json).not.toHaveBeenCalled();
   });
+
+  it('patchSample works correctly', async () => {
+    const mockSampleNewName = 'theNewName';
+    const mockReq = {
+      params: { experimentId: mockExperimentId, sampleId: mockSampleId },
+      body: { name: mockSampleNewName },
+    };
+
+    sampleInstance.updateById.mockImplementationOnce(() => Promise.resolve());
+
+    await sampleController.patchSample(mockReq, mockRes);
+
+    expect(sampleInstance.updateById).toHaveBeenCalledWith(
+      mockSampleId, { name: mockSampleNewName },
+    );
+
+    expect(mockRes.json).toHaveBeenCalledWith(OK());
+  });
 });
diff --git a/tests/api.v2/mocks/data/getProcessingConfigResponse.json b/tests/api.v2/mocks/data/getProcessingConfigResponse.json
new file mode 100644
index 000000000..92714b559
--- /dev/null
+++ b/tests/api.v2/mocks/data/getProcessingConfigResponse.json
@@ -0,0 +1,342 @@
+[{
+    "processingConfig":{
+        "classifier": {
+          "brandNewTries": "changing lmaolxdd"
+        },
+        "doubletScores": {
+          "auto": true,
+          "enabled": true,
+          "filterSettings": {
+            "binStep": 0.05,
+            "probabilityThreshold": 0.5
+          },
+          "330390E9Cdc94C7FB68A0C51Fd059Dda": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.3784758
+            },
+            "defaultFilterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.3784758
+            }
+          },
+          "46E6484545Dc4Aeb932DE1B43178Fe09": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.4101394
+            },
+            "defaultFilterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.4101394
+            }
+          },
+          "7Ff6388CCa204325A30C0C29135E1D05": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.7622447
+            },
+            "defaultFilterSettings": {
+              "binStep": 0.05,
+              "probabilityThreshold": 0.7622447
+            }
+          }
+        },
+        "dataIntegration": {
+          "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+        
+          "dataIntegration": {
+            "method": "harmony",
+            "methodSettings": {
+              "fastmnn": {
+                "numGenes": 2000,
+                "normalisation": "logNormalize"
+              },
+              "harmony": {
+                "numGenes": 2000,
+                "normalisation": "logNormalize"
+              },
+              "seuratv4": {
+                "numGenes": 2000,
+                "normalisation": "logNormalize"
+              },
+              "unisample": {
+                "numGenes": 2000,
+                "normalisation": "logNormalize"
+              }
+            }
+          },
+          "dimensionalityReduction": {
+            "method": "rpca",
+            "numPCs": 30,
+            "excludeGeneCategories": []
+          }
+        },
+        "numGenesVsNumUmis": {
+          "enabled": true,
+          "filterSettings": {
+            "regressionType": "gam",
+            "regressionTypeSettings": {
+              "gam": {
+                "pLevel": 0.001
+              }
+            }
+          },
+          "330390E9Cdc94C7FB68A0C51Fd059Dda": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009066183
+                },
+                "spline": {
+                  "pLevel": 0.00009066183
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009066183
+                },
+                "spline": {
+                  "pLevel": 0.00009066183
+                }
+              }
+            }
+          },
+          "46E6484545Dc4Aeb932DE1B43178Fe09": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009075234
+                },
+                "spline": {
+                  "pLevel": 0.00009075234
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009075234
+                },
+                "spline": {
+                  "pLevel": 0.00009075234
+                }
+              }
+            }
+          },
+          "7Ff6388CCa204325A30C0C29135E1D05": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009180207
+                },
+                "spline": {
+                  "pLevel": 0.00009180207
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "regressionType": "linear",
+              "regressionTypeSettings": {
+                "linear": {
+                  "pLevel": 0.00009180207
+                },
+                "spline": {
+                  "pLevel": 0.00009180207
+                }
+              }
+            }
+          }
+        },
+        "configureEmbedding": {
+          "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+        
+          "embeddingSettings": {
+            "method": "umap",
+            "methodSettings": {
+              "tsne": {
+                "perplexity": 30,
+                "learningRate": 938.9167
+              },
+              "umap": {
+                "distanceMetric": "cosine",
+                "minimumDistance": 0.3
+              }
+            }
+          },
+          "clusteringSettings": {
+            "method": "louvain",
+            "methodSettings": {
+              "louvain": {
+                "resolution": 0.8
+              }
+            }
+          }
+        },
+        "cellSizeDistribution": {
+          "auto": true,
+          "enabled": false,
+          "filterSettings": {
+            "binStep": 200,
+            "minCellSize": 1080
+          },
+          "330390E9Cdc94C7FB68A0C51Fd059Dda": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": false,
+            "filterSettings": {
+              "binStep": 200,
+              "minCellSize": 907
+            },
+            "defaultFilterSettings": {
+              "binStep": 200,
+              "minCellSize": 907
+            }
+          },
+          "46E6484545Dc4Aeb932DE1B43178Fe09": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": false,
+            "filterSettings": {
+              "binStep": 200,
+              "minCellSize": 623
+            },
+            "defaultFilterSettings": {
+              "binStep": 200,
+              "minCellSize": 623
+            }
+          },
+          "7Ff6388CCa204325A30C0C29135E1D05": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": false,
+            "filterSettings": {
+              "binStep": 200,
+              "minCellSize": 516
+            },
+            "defaultFilterSettings": {
+              "binStep": 200,
+              "minCellSize": 516
+            }
+          }
+        },
+        "mitochondrialContent": {
+          "auto": true,
+          "enabled": true,
+          "filterSettings": {
+            "method": "absolute_threshold",
+            "methodSettings": {
+              "absoluteThreshold": {
+                "binStep": 0.05,
+                "maxFraction": 0.1
+              }
+            }
+          },
+          "330390E9Cdc94C7FB68A0C51Fd059Dda": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            }
+          },
+          "46E6484545Dc4Aeb932DE1B43178Fe09": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            }
+          },
+          "7Ff6388CCa204325A30C0C29135E1D05": {
+            "auto": true,
+            "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+          
+            "enabled": true,
+            "filterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            },
+            "defaultFilterSettings": {
+              "method": "absolute_threshold",
+              "methodSettings": {
+                "absoluteThreshold": {
+                  "binStep": 0.05,
+                  "maxFraction": 0.1
+                }
+              }
+            }
+          }
+        }
+      }
+}]
\ No newline at end of file
diff --git a/tests/api.v2/model/Experiment.test.js b/tests/api.v2/model/Experiment.test.js
index e3b13d6e4..70a763223 100644
--- a/tests/api.v2/model/Experiment.test.js
+++ b/tests/api.v2/model/Experiment.test.js
@@ -4,8 +4,9 @@ const sqlClient = require('../../../src/sql/sqlClient');
 const helpers = require('../../../src/sql/helpers');
 
 const validSamplesOrderResult = ['sampleId1', 'sampleId2', 'sampleId3', 'sampleId4'];
-
+const getProcessingConfigResponse = require('../mocks/data/getProcessingConfigResponse');
 const { mockSqlClient, mockTrx } = require('../mocks/getMockSqlClient')();
+const BasicModel = require('../../../src/api.v2/model/BasicModel');
 
 jest.mock('../../../src/sql/sqlClient', () => ({
   get: jest.fn(() => mockSqlClient),
@@ -184,4 +185,26 @@ describe('model/Experiment', () => {
     expect(mockSqlClient.raw).toHaveBeenCalledWith('samples_order - \'mockSampleId\'');
     expect(mockSqlClient.where).toHaveBeenCalledWith('id', 'mockExperimentId');
   });
+
+  it('getProcessingConfig works', async () => {
+    const mockFind = jest.spyOn(BasicModel.prototype, 'find')
+      .mockImplementationOnce(() => Promise.resolve(getProcessingConfigResponse));
+
+    const result = await new Experiment().getProcessingConfig(mockExperimentId);
+    expect(mockFind).toHaveBeenCalledWith({ id: mockExperimentId });
+    expect(result).toMatchSnapshot();
+  });
+
+  it('updateProcessingConfig works', async () => {
+    const mockBody = [{
+      name: 'classifier',
+      body: {
+        changedField: 'IamChanging so much',
+      },
+    }];
+
+    mockSqlClient.where.mockImplementationOnce(() => { Promise.resolve(); });
+    await new Experiment().updateProcessingConfig(mockExperimentId, mockBody);
+    expect(mockSqlClient.where).toHaveBeenCalledWith('id', mockExperimentId);
+  });
 });
diff --git a/tests/api.v2/model/__snapshots__/Experiment.test.js.snap b/tests/api.v2/model/__snapshots__/Experiment.test.js.snap
index e8fcfd911..27bb6818a 100644
--- a/tests/api.v2/model/__snapshots__/Experiment.test.js.snap
+++ b/tests/api.v2/model/__snapshots__/Experiment.test.js.snap
@@ -12,6 +12,335 @@ Array [
 ]
 `;
 
+exports[`model/Experiment getProcessingConfig works 1`] = `
+Object {
+  "cellSizeDistribution": Object {
+    "330390E9Cdc94C7FB68A0C51Fd059Dda": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 907,
+      },
+      "enabled": false,
+      "filterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 907,
+      },
+    },
+    "46E6484545Dc4Aeb932DE1B43178Fe09": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 623,
+      },
+      "enabled": false,
+      "filterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 623,
+      },
+    },
+    "7Ff6388CCa204325A30C0C29135E1D05": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 516,
+      },
+      "enabled": false,
+      "filterSettings": Object {
+        "binStep": 200,
+        "minCellSize": 516,
+      },
+    },
+    "auto": true,
+    "enabled": false,
+    "filterSettings": Object {
+      "binStep": 200,
+      "minCellSize": 1080,
+    },
+  },
+  "classifier": Object {
+    "brandNewTries": "changing lmaolxdd",
+  },
+  "configureEmbedding": Object {
+    "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+    "clusteringSettings": Object {
+      "method": "louvain",
+      "methodSettings": Object {
+        "louvain": Object {
+          "resolution": 0.8,
+        },
+      },
+    },
+    "embeddingSettings": Object {
+      "method": "umap",
+      "methodSettings": Object {
+        "tsne": Object {
+          "learningRate": 938.9167,
+          "perplexity": 30,
+        },
+        "umap": Object {
+          "distanceMetric": "cosine",
+          "minimumDistance": 0.3,
+        },
+      },
+    },
+  },
+  "dataIntegration": Object {
+    "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+    "dataIntegration": Object {
+      "method": "harmony",
+      "methodSettings": Object {
+        "fastmnn": Object {
+          "normalisation": "logNormalize",
+          "numGenes": 2000,
+        },
+        "harmony": Object {
+          "normalisation": "logNormalize",
+          "numGenes": 2000,
+        },
+        "seuratv4": Object {
+          "normalisation": "logNormalize",
+          "numGenes": 2000,
+        },
+        "unisample": Object {
+          "normalisation": "logNormalize",
+          "numGenes": 2000,
+        },
+      },
+    },
+    "dimensionalityReduction": Object {
+      "excludeGeneCategories": Array [],
+      "method": "rpca",
+      "numPCs": 30,
+    },
+  },
+  "doubletScores": Object {
+    "330390E9Cdc94C7FB68A0C51Fd059Dda": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.3784758,
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.3784758,
+      },
+    },
+    "46E6484545Dc4Aeb932DE1B43178Fe09": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.4101394,
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.4101394,
+      },
+    },
+    "7Ff6388CCa204325A30C0C29135E1D05": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.7622447,
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "binStep": 0.05,
+        "probabilityThreshold": 0.7622447,
+      },
+    },
+    "auto": true,
+    "enabled": true,
+    "filterSettings": Object {
+      "binStep": 0.05,
+      "probabilityThreshold": 0.5,
+    },
+  },
+  "mitochondrialContent": Object {
+    "330390E9Cdc94C7FB68A0C51Fd059Dda": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+    },
+    "46E6484545Dc4Aeb932DE1B43178Fe09": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+    },
+    "7Ff6388CCa204325A30C0C29135E1D05": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "method": "absolute_threshold",
+        "methodSettings": Object {
+          "absoluteThreshold": Object {
+            "binStep": 0.05,
+            "maxFraction": 0.1,
+          },
+        },
+      },
+    },
+    "auto": true,
+    "enabled": true,
+    "filterSettings": Object {
+      "method": "absolute_threshold",
+      "methodSettings": Object {
+        "absoluteThreshold": Object {
+          "binStep": 0.05,
+          "maxFraction": 0.1,
+        },
+      },
+    },
+  },
+  "numGenesVsNumUmis": Object {
+    "330390E9Cdc94C7FB68A0C51Fd059Dda": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009066183,
+          },
+          "spline": Object {
+            "pLevel": 0.00009066183,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009066183,
+          },
+          "spline": Object {
+            "pLevel": 0.00009066183,
+          },
+        },
+      },
+    },
+    "46E6484545Dc4Aeb932DE1B43178Fe09": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009075234,
+          },
+          "spline": Object {
+            "pLevel": 0.00009075234,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009075234,
+          },
+          "spline": Object {
+            "pLevel": 0.00009075234,
+          },
+        },
+      },
+    },
+    "7Ff6388CCa204325A30C0C29135E1D05": Object {
+      "apiUrl": "http://api.api-default.svc.cluster.local:3000",
+      "auto": true,
+      "defaultFilterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009180207,
+          },
+          "spline": Object {
+            "pLevel": 0.00009180207,
+          },
+        },
+      },
+      "enabled": true,
+      "filterSettings": Object {
+        "regressionType": "linear",
+        "regressionTypeSettings": Object {
+          "linear": Object {
+            "pLevel": 0.00009180207,
+          },
+          "spline": Object {
+            "pLevel": 0.00009180207,
+          },
+        },
+      },
+    },
+    "enabled": true,
+    "filterSettings": Object {
+      "regressionType": "gam",
+      "regressionTypeSettings": Object {
+        "gam": Object {
+          "pLevel": 0.001,
+        },
+      },
+    },
+  },
+}
+`;
+
 exports[`model/Experiment updateSamplePosition rolls back if the parameters are invalid 1`] = `
 Array [
   "(
diff --git a/tests/api.v2/routes/experiment.test.js b/tests/api.v2/routes/experiment.test.js
index 4f2387409..ab9b06462 100644
--- a/tests/api.v2/routes/experiment.test.js
+++ b/tests/api.v2/routes/experiment.test.js
@@ -9,6 +9,7 @@ const experimentController = require('../../../src/api.v2/controllers/experiment
 
 const getExperimentResponse = require('../mocks/data/getExperimentResponse.json');
 const getAllExperimentsResponse = require('../mocks/data/getAllExperimentsResponse.json');
+const getProcessingConfigResponse = require('../mocks/data/getProcessingConfigResponse.json');
 
 jest.mock('../../../src/api.v2/controllers/experimentController', () => ({
   getAllExperiments: jest.fn(),
@@ -16,6 +17,8 @@ jest.mock('../../../src/api.v2/controllers/experimentController', () => ({
   createExperiment: jest.fn(),
   patchExperiment: jest.fn(),
   updateSamplePosition: jest.fn(),
+  getProcessingConfig: jest.fn(),
+  updateProcessingConfig: jest.fn(),
 }));
 
 jest.mock('../../../src/api.v2/middlewares/authMiddlewares');
@@ -234,4 +237,39 @@ describe('tests for experiment route', () => {
         return done();
       });
   });
+
+  it('getProcessingConfig works', async (done) => {
+    const experimentId = 'experiment-id';
+    experimentController.getProcessingConfig.mockImplementationOnce((req, res) => {
+      res.json(getProcessingConfigResponse);
+      return Promise.resolve();
+    });
+    request(app)
+      .get(`/v2/experiments/${experimentId}/processingConfig`)
+      .expect(200)
+      .end((err) => {
+        if (err) {
+          return done(err);
+        }
+        return done();
+      });
+  });
+
+  it('updateProcessingConfig works', async (done) => {
+    const experimentId = 'experiment-id';
+
+    experimentController.updateProcessingConfig.mockImplementationOnce((req, res) => {
+      res.json(OK());
+      return Promise.resolve();
+    });
+    request(app)
+      .put(`/v2/experiments/${experimentId}/processingConfig`)
+      .expect(200)
+      .end((err) => {
+        if (err) {
+          return done(err);
+        }
+        return done();
+      });
+  });
 });
diff --git a/tests/api.v2/routes/sample.test.js b/tests/api.v2/routes/sample.test.js
index 11c118f0a..46fc32691 100644
--- a/tests/api.v2/routes/sample.test.js
+++ b/tests/api.v2/routes/sample.test.js
@@ -10,6 +10,7 @@ const sampleController = require('../../../src/api.v2/controllers/sampleControll
 jest.mock('../../../src/api.v2/controllers/sampleController', () => ({
   createSample: jest.fn(),
   deleteSample: jest.fn(),
+  patchSample: jest.fn(),
 }));
 
 jest.mock('../../../src/api.v2/middlewares/authMiddlewares');
@@ -89,13 +90,8 @@ describe('tests for experiment route', () => {
       return Promise.resolve();
     });
 
-    const invalidExperimentData = {
-      description: 'experimentDescription',
-    };
-
     request(app)
       .delete(`/v2/experiments/${experimentId}/samples/${sampleId}`)
-      .send(invalidExperimentData)
       .expect(200)
       .end((err) => {
         if (err) {
@@ -106,4 +102,44 @@ describe('tests for experiment route', () => {
         return done();
       });
   });
+
+  it('Patching a sample works', async (done) => {
+    sampleController.patchSample.mockImplementationOnce((req, res) => {
+      res.json(OK());
+      return Promise.resolve();
+    });
+
+    request(app)
+      .patch(`/v2/experiments/${experimentId}/samples/${sampleId}`)
+      .send({ name: 'newSampleName' })
+      .expect(200)
+      .end((err) => {
+        if (err) {
+          return done(err);
+        }
+        // there is no point testing for the values of the response body
+        // - if something is wrong, the schema validator will catch it
+        return done();
+      });
+  });
+
+  it('Patching a sample fails if requestBody is invalid', async (done) => {
+    sampleController.patchSample.mockImplementationOnce((req, res) => {
+      res.json(OK());
+      return Promise.resolve();
+    });
+
+    request(app)
+      .patch(`/v2/experiments/${experimentId}/samples/${sampleId}`)
+      .send({ aName: 'newSampleName' })
+      .expect(400)
+      .end((err) => {
+        if (err) {
+          return done(err);
+        }
+        // there is no point testing for the values of the response body
+        // - if something is wrong, the schema validator will catch it
+        return done();
+      });
+  });
 });
diff --git a/tests/api/event-services/work-request.test.js b/tests/api/event-services/work-request.test.js
index f1f3089ae..665592953 100644
--- a/tests/api/event-services/work-request.test.js
+++ b/tests/api/event-services/work-request.test.js
@@ -74,7 +74,7 @@ describe('handleWorkRequest', () => {
       await handleWorkRequest(workRequest);
     } catch (e) {
       expect(e.message).toMatch(
-        /^Error: distanceMetric must be one of the following/,
+        /^Error: distanceMetric must be one of the following:/,
       );
     }
   });