Adjust stacklevel to point to user code #2233
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run code coverage | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| tags-ignore: # exclude tags created by "ci_addons publish_github_release" | |
| - 'latest' | |
| - 'latest-tmp' | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| run-coverage: | |
| name: ${{ matrix.os }}, opt reqs ${{ matrix.opt_req }} | |
| runs-on: ${{ matrix.os }} | |
| # TODO handle forks | |
| # run pipeline on either a push event or a PR event on a fork | |
| # if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.os }}-${{ matrix.opt_req }} | |
| cancel-in-progress: true | |
| strategy: | |
| matrix: | |
| include: | |
| - { os: ubuntu-latest , opt_req: true } | |
| - { os: ubuntu-latest , opt_req: false } | |
| - { os: windows-latest, opt_req: false } | |
| - { os: macos-latest , opt_req: false } | |
| env: # used by codecov-action | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.11' # TODO update to 3.12 when optional reqs (e.g., oaklib) support 3.12 | |
| steps: | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required to determine the version | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -r requirements-dev.txt -r requirements.txt | |
| - name: Install optional dependencies | |
| if: ${{ matrix.opt_req }} | |
| run: python -m pip install -r requirements-opt.txt | |
| - name: Install package | |
| run: | | |
| python -m pip install . | |
| python -m pip list | |
| - name: Run tests and generate coverage report | |
| run: | | |
| # coverage is configured in pyproject.toml | |
| pytest --cov --cov-report=xml --cov-report=term # codecov uploader requires xml format | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| file: ./coverage.xml | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| run-ros3-coverage: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} # necessary for conda | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.name }} | |
| cancel-in-progress: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.12-ros3 , python-ver: "3.12", os: ubuntu-latest } | |
| steps: | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required to determine the version | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: ros3 | |
| environment-file: environment-ros3.yml | |
| python-version: ${{ matrix.python-ver }} | |
| channels: conda-forge | |
| auto-activate-base: false | |
| mamba-version: "*" | |
| - name: Install run dependencies | |
| run: | | |
| pip install . | |
| pip list | |
| - name: Conda reporting | |
| run: | | |
| conda info | |
| conda config --show-sources | |
| conda list --show-channel-urls | |
| - name: Run ros3 tests # TODO include gallery tests after they are written | |
| run: | | |
| pytest --cov --cov-report=xml --cov-report=term tests/unit/test_io_hdf5_streaming.py | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| file: ./coverage.xml | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |