.gitignore

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so

# Packages #
############
# it's better to unpack these files and commit the raw source
# git has its own built in compression methods
*.7z
*.dmg
*.gz
*.iso
*.jar
*.rar
*.tar
*.zip

# Logs and databases #
######################
*.log
*.sql
*.sqlite
*.txt

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# autotools #
/aclocal.m4
/src/config.h.in~
/Makefile.in
/config.status
/stamp-h1
/missing
/install-sh
/compile
/depcomp
.deps
autom4te.cache
/configure
/config.h
/src/config.h.in
/config.mk

#my
/main
/f5c
/f5c_static
/*.fast5
*.fig
/*.fa
/*.fasta
.png
/*.tsv
*.swp
/tmp/
/htslib
/hdf5
/zstd
/.vscode
src/config.h
test/ecoli_2kb_region/reads.fasta.index.readdb
/profile.nvprof