Test.yml

name: Tests

on: [push]

jobs:
  build:

    runs-on: ${{matrix.os}}
    strategy:
      matrix:
        os: [ubuntu-latest, windows-latest, macos-13]
        python-version: ["3.8", "3.9", "3.10"]
    
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
          persist-credentials: false
      - uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          activate-environment: test
          channels: conda-forge
          python-version: ${{ matrix.python-version }}
      - name: Upgrade pip
        shell: bash -l {0}
        run: python -m pip install --upgrade pip
      - name: MacOS install hdf5 dependencies
        if: runner.os == 'macOS'
        run: |
          brew install hdf5
          export HDF5_DIR=/usr/local/
          export BLOSC_DIR=/usr/local/
      - name: Install Dependencies
        shell: bash -l {0}
        run: |
          conda install cython numpy numba nbconvert pytest jupyter scipy pandas matplotlib pytables phconvert lmfit seaborn setuptools build pyqt fretbursts h2mm-c
      - name: Download Files Unix
        if: runner.os != 'Windows'
        shell: bash -l {0}
        run: |
          wget -N https://zenodo.org/record/5902313/files/HP3_TE300_SPC630.hdf5
          wget -N https://figshare.com/ndownloader/files/4858417 -O HairPin3_RT_400mM_NaCl_A_31_TA.hdf5
      - name: Download files Windows
        if: runner.os == 'Windows'
        shell: bash -l {0}
        run: |
           curl.exe -L --output HP3_TE300_SPC630.hdf5 --url https://zenodo.org/record/5902313/files/HP3_TE300_SPC630.hdf5
           curl.exe -L --output HairPin3_RT_400mM_NaCl_A_31_TA.hdf5 --url https://figshare.com/ndownloader/files/4858417
      - name: Test with pytest
        shell: bash -l {0}
        run: python -m pytest