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menu.carsten.json
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menu.carsten.json
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{
"File": {
"Search Structure ": ["ui-id-13", 0],
"Search Similar": {
"self": ["ui-id-14", 0],
"NCBI VAST+ (PDB Assembly)": ["div0_mn1_vastplus", 0],
"NCBI VAST (PDB)": ["div0_mn1_vast", 0],
"Foldseek (PDB & AlphaFold)": ["div0_mn1_foldseek", 0]
},
"Retrieve by ID": {
"self": ["ui-id-15", 1],
"MMDB ID ": ["div0_mn1_mmdbid", 0],
"MMTF ID ": ["div0_mn1_mmtfid", 0],
"PDB ID ": ["div0_mn1_pdbid", 1],
"AlphaFold UniProt ID ": ["div0_mn1_afid", 0],
"MMDB or AlphaFold IDs": ["div0_mn1_mmdbafid", 0],
"OPM PDB ID ": ["div0_mn1_opmid", 0],
"mmCIF ID ": ["div0_mn1_mmcifid", 0],
"NCBI gi ": ["div0_mn1_gi", 0],
"PubChem CID ": ["div0_mn1_cid", 0]
},
"Open File": {
"self": ["ui-id-16", 0],
"PDB Files (appendable)": ["div0_mn1_pdbfile_app", 0],
"mmCIF File": ["div0_mn1_mmciffile", 0],
"Mol2 File": ["div0_mn1_mol2file", 0],
"SDF File": ["div0_mn1_sdffile", 0],
"XYZ File": ["div0_mn1_xyzfile", 0],
"AlphaFold PAE File": ["div0_mn1_afmapfile", 0],
"URL(Same Host) ": ["div0_mn1_urlfile", 0],
"-": [null, 0],
"iCn3D PNG Image": ["div0_mn1_pngimage", 0],
"State/Script File": ["div0_mn1_state", 0],
"Share Link in Archived Ver. ": ["div0_mn1_fixedversion", 0],
"Selection File": ["div0_mn1_selection", 0],
"Electron Density(DSN6)": {
"self": ["ui-id-17", 0],
"Local File": ["div0_mn1_dsn6", 0],
"URL(Same Host) ": ["div0_mn1_dsn6url", 0]
}
},
"Align": {
"self": ["ui-id-18", 1],
"Sequence to Structure": ["div0_mn1_blast_rep_id", 0],
"Structure to Structure": {
"self": ["ui-id-19", 1],
"Two PDB Structures ": ["div0_mn1_align", 1],
"Two AlphaFold Structures ": ["div0_mn1_alignaf", 0]
},
"Multiple Chains ": ["div0_mn1_chainalign", 0]
},
"Realign Selection": {
"self": ["ui-id-20", 0],
"by Structure Alignment ": ["ui-id-21", 0],
"by Sequence Alignment ": ["ui-id-22", 0],
"Residue by Residue": ["ui-id-23", 0]
},
"3D Printing": {
"self": ["ui-id-24", 0],
"WRL/VRML(Color, W/ Stab.)": ["div0_mn1_exportVrmlStab", 0],
"STL(W/ Stabilizers)": ["div0_mn1_exportStlStab", 0],
"-": [null, 0],
"WRL/VRML(Color)": ["div0_mn1_exportVrml", 0],
"STL": ["div0_mn1_exportStl", 0],
"Add All Stabilizers": ["div0_mn1_stabilizerYes", 0],
"Remove All Stabilizers": ["div0_mn1_stabilizerNo", 0],
"Add One Stabilizer": ["div0_mn1_stabilizerOne", 0],
"Remove One Stabilizer": ["div0_mn1_stabilizerRmOne", 0],
"Set Thickness": ["div0_mn1_thicknessSet", 0]
},
"Save Files": {
"self": ["ui-id-25", 1],
"iCn3D PNG Image": {
"self": ["ui-id-26", 1],
"Original Size & HTML": ["div0_mn1_exportCanvas", 0],
"Original Size": ["div0_mn1_exportCanvas1", 1],
"2X Large": ["div0_mn1_exportCanvas2", 1],
"4X Large": ["div0_mn1_exportCanvas4", 0],
"8X Large": ["div0_mn1_exportCanvas8", 0]
},
"State File": ["div0_mn1_exportState", 0],
"Selection File": ["div0_mn1_exportSelections", 0],
"Selection Details": ["div0_mn1_exportSelDetails", 0],
"Residue Counts": ["div0_mn1_exportCounts", 0],
"PDB": ["div0_mn1_exportPdbRes", 0],
"Secondary Structure": ["div0_mn1_exportSecondary", 0]
},
"Share Link ": ["div0_mn1_sharelink", 1],
"Replay Each Step": ["div0_mn1_replayon", 1]
},
"Select": {
"Defined Sets": ["div0_mn2_definedsets", 0],
"All": ["div0_mn2_selectall", 1],
"Displayed Set": ["div0_mn2_selectdisplayed", 0],
"by Distance": ["div0_mn2_aroundsphere", 1],
"by Property": {
"self": ["ui-id-28", 1],
"Positive": ["div0_mn2_propPos", 1],
"Negative": ["div0_mn2_propNeg", 1],
"Hydrophobic": ["div0_mn2_propHydro", 1],
"Polar": ["div0_mn2_propPolar", 1],
"B-factor": ["div0_mn2_propBfactor", 1],
"Solvent Accessibility": ["div0_mn2_propSolAcc", 1]
},
"Inverse": ["div0_mn2_selectcomplement", 1],
"Main Chains": ["div0_mn2_selectmainchains", 0],
"Side Chains": ["div0_mn2_selectsidechains", 0],
"Main & Side Chains": ["div0_mn2_selectmainsidechains", 0],
"Advanced": ["div0_mn2_command", 0],
"Select on 3D": {
"self": ["ui-id-29", 0],
"\"Alt\"+Click: start selection": [null, 0],
"\"Ctrl\"+Click: union selection": [null, 0],
"\"Shift\"+Click: range Selection": [null, 0],
"-": [null, 0],
"Chain": ["ui-id-30", 0],
"Strand/Helix": ["ui-id-31", 0],
"Residue": ["ui-id-32", 0],
"Atom": ["ui-id-33", 0],
"None": ["ui-id-34", 0]
},
"-": ["ui-id-27", 0],
"Save Selection": ["div0_mn2_saveselection", 1],
"Clear Selection": ["div0_clearall", 1],
"Highlight Color": {
"self": ["ui-id-35", 0],
"Yellow": ["ui-id-36", 0],
"Green": ["ui-id-37", 0],
"Red": ["ui-id-38", 0]
},
"Highlight Style": {
"self": ["ui-id-39", 0],
"Outline": ["ui-id-40", 0],
"3D Objects": ["ui-id-41", 0]
},
"Toggle Highlight": ["div0_toggleHighlight2", 1]
},
"View": {
"Hide Unselected": ["div0_mn2_show_selected", 1],
"Hide Selection": ["div0_mn2_hide_selected", 1],
"Zoom in Selection": ["div0_mn2_selectedcenter", 1],
"Center Selection": ["div0_mn6_center", 1],
"View Full Structure": ["div0_mn2_fullstru", 1],
"Alternate(Key \"a\")": ["div0_mn2_alternate", 0],
"Toggle Membrane": ["div0_togglemem", 0],
"Adjust Membrane": ["div0_adjustmem", 0],
"-": ["ui-id-42", 0],
"VR & AR Hints": {
"self": ["ui-id-43", 0],
"VR: VR Headsets": ["ui-id-44", 0],
"AR: Chrome in Android": ["ui-id-45", 0]
},
"Side by Side": ["div0_mn6_sidebyside", 1],
"Rotate": {
"self": ["ui-id-46", 1],
"Rotate 90\u00b0": {
"self": ["ui-id-47", 1],
"X-axis(Shift + Key M)": ["ui-id-48", 1],
"Y-axis(Shift + Key J)": ["ui-id-49", 1],
"Z-axis": ["ui-id-50", 1]
},
"Auto Rotation": {
"self": ["ui-id-51", 1],
"Rotate Left": ["ui-id-52", 1],
"Rotate Right": ["ui-id-53", 1],
"Rotate Up": ["ui-id-54", 1],
"Rotate Down": ["ui-id-55", 1]
}
},
"Camera": {
"self": ["ui-id-56", 0],
"Perspective": ["ui-id-57", 0],
"Orthographic": ["ui-id-58", 0]
},
"Fog for Selection": {
"self": ["ui-id-59", 0],
"On": ["ui-id-60", 0],
"Off": ["ui-id-61", 0]
},
"Slab for Selection": {
"self": ["ui-id-62", 0],
"On": ["ui-id-63", 0],
"Off": ["ui-id-64", 0]
},
"XYZ-axes": {
"self": ["ui-id-65", 0],
"Original": ["ui-id-66", 0],
"Prin. Axes on Sel.": ["ui-id-67", 0],
"Hide": ["ui-id-68", 0]
},
"Reset": {
"self": ["ui-id-69", 1],
"All": ["ui-id-70", 1],
"Orientation": ["ui-id-71", 1]
},
"Undo": ["div0_mn6_back", 1],
"Redo": ["div0_mn6_forward", 1],
"Full Screen": ["div0_mn6_fullscreen", 0]
},
"Style": {
"Proteins": {
"self": ["ui-id-73", 1],
"Ribbon": ["ui-id-74", 1],
"Strand": ["ui-id-75", 1],
"Cylinder and Plate": ["ui-id-76", 0],
"Schematic": ["ui-id-77", 0],
"C Alpha Trace": ["ui-id-78", 0],
"Backbone": ["ui-id-79", 1],
"B-factor Tube": ["ui-id-80", 0],
"Lines": ["ui-id-81", 1],
"Stick": ["ui-id-82", 0],
"Ball and Stick": ["ui-id-83", 1],
"Sphere": ["ui-id-84", 0],
"Hide": ["ui-id-85", 0]
},
"Side Chains": {
"self": ["ui-id-86", 1],
"Lines": ["ui-id-87", 1],
"Stick": ["ui-id-88", 0],
"Ball and Stick": ["ui-id-89", 1],
"Sphere": ["ui-id-90", 0],
"Hide": ["ui-id-91", 0]
},
"Nucleotides": {
"self": ["ui-id-92", 1],
"Cartoon": ["ui-id-93", 1],
"O3' Trace": ["ui-id-94", 0],
"Backbone": ["ui-id-95", 1],
"Schematic": ["ui-id-96", 1],
"Lines": ["ui-id-97", 0],
"Stick": ["ui-id-98", 0],
"Ball and Stick": ["ui-id-99", 1],
"Sphere": ["ui-id-100", 0],
"Hide": ["ui-id-101", 0]
},
"Nucl. Bases": {
"self": ["ui-id-102", 1],
"Lines": ["ui-id-103", 0],
"Stick": ["ui-id-104", 0],
"Ball and Stick": ["ui-id-105", 1],
"Sphere": ["ui-id-106", 0],
"Hide": ["ui-id-107", 0]
},
"Chemicals": {
"self": ["ui-id-108", 1],
"Lines": ["ui-id-109", 0],
"Stick": ["ui-id-110", 0],
"Ball and Stick": ["ui-id-111", 1],
"Schematic": ["ui-id-112", 0],
"Sphere": ["ui-id-113", 0],
"Hide": ["ui-id-114", 0]
},
"Hydrogens": {
"self": ["ui-id-115", 1],
"Show": ["ui-id-116", 1],
"Hide": ["ui-id-117", 1]
},
"Glycans": {
"self": ["ui-id-118", 1],
"Show Cartoon": ["ui-id-119", 1],
"Hide Cartoon": ["ui-id-120", 1]
},
"Ions": {
"self": ["ui-id-121", 1],
"Sphere": ["ui-id-122", 1],
"Dot": ["ui-id-123", 0],
"Hide": ["ui-id-124", 1]
},
"Water": {
"self": ["ui-id-125", 1],
"Sphere": ["ui-id-126", 1],
"Dot": ["ui-id-127", 0],
"Hide": ["ui-id-128", 1]
},
"Preferences": ["div0_mn3_setThickness", 0],
"-": ["ui-id-72", 0],
"Save Style": ["div0_mn3_styleSave", 1],
"Apply Saved Style": ["div0_mn3_styleApplySave", 1],
"Surface Type": {
"self": ["ui-id-129", 0],
"Van der Waals": ["ui-id-130", 1],
"VDW with Context": ["ui-id-131", 0],
"Molecular Surface": ["ui-id-132", 1],
"MS with Context": ["ui-id-133", 0],
"Solvent Accessible": ["ui-id-134", 1],
"SA with Context": ["ui-id-135", 0]
},
"Remove Surface": ["div0_mn5_surfaceNo", 0],
"Surface Opacity": {
"self": ["ui-id-136", 0],
"Fast Transparency": {
"self": ["ui-id-137", 0],
"1.0": ["ui-id-138", 0],
"0.9": ["ui-id-139", 0],
"0.8": ["ui-id-140", 0],
"0.7": ["ui-id-141", 0],
"0.6": ["ui-id-142", 0],
"0.5": ["ui-id-143", 0],
"0.4": ["ui-id-144", 0],
"0.3": ["ui-id-145", 0],
"0.2": ["ui-id-146", 0],
"0.1": ["ui-id-147", 0]
},
"Slow Transparency": {
"self": ["ui-id-148", 0],
"1.0": ["ui-id-149", 0],
"0.9": ["ui-id-150", 0],
"0.8": ["ui-id-151", 0],
"0.7": ["ui-id-152", 0],
"0.6": ["ui-id-153", 0],
"0.5": ["ui-id-154", 0],
"0.4": ["ui-id-155", 0],
"0.3": ["ui-id-156", 0],
"0.2": ["ui-id-157", 0],
"0.1": ["ui-id-158", 0]
}
},
"Surface Wireframe": {
"self": ["ui-id-159", 0],
"Yes": ["ui-id-160", 0],
"No": ["ui-id-161", 0]
},
"Electron Density": {
"self": ["ui-id-162", 0],
"2Fo-Fc Map": ["ui-id-163", 0],
"Fo-Fc Map": ["ui-id-164", 0]
},
"Remove Map": ["div0_mn5_elecmapNo", 0],
"Map Wireframe": {
"self": ["ui-id-165", 0],
"Yes": ["ui-id-166", 0],
"No": ["ui-id-167", 0]
},
"EM Density Map": ["div0_mn5_emmap", 0],
"Remove EM Map": ["div0_mn5_emmapNo", 0],
"EM Map Wireframe": {
"self": ["ui-id-168", 0],
"Yes": ["ui-id-169", 0],
"No": ["ui-id-170", 0]
},
"Background": {
"self": ["ui-id-171", 1],
"Transparent": ["ui-id-172", 1],
"Black": ["ui-id-173", 1],
"Gray": ["ui-id-174", 1],
"White": ["ui-id-175", 1]
},
"Dialog Color": {
"self": ["ui-id-176", 0],
"Blue": ["ui-id-177", 0],
"Orange": ["ui-id-178", 0],
"Black": ["ui-id-179", 0]
}
},
"Color": {
"Unicolor": {
"self": ["ui-id-181", 1],
"Red": {
"self": ["ui-id-182", 1],
"\u00a0\u00a0\u00a0": ["ui-id-191", 1]
},
"Pink": {
"self": ["ui-id-192", 1],
"\u00a0\u00a0\u00a0": ["ui-id-198", 1]
},
"Orange": {
"self": ["ui-id-199", 1],
"\u00a0\u00a0\u00a0": ["ui-id-205", 1]
},
"Yellow": {
"self": ["ui-id-206", 1],
"\u00a0\u00a0\u00a0": ["ui-id-217", 1]
},
"Magenta": {
"self": ["ui-id-218", 1],
"\u00a0\u00a0\u00a0": ["ui-id-236", 1]
},
"Green": {
"self": ["ui-id-237", 1],
"\u00a0\u00a0\u00a0": ["ui-id-259", 1]
},
"Cyan": {
"self": ["ui-id-260", 1],
"\u00a0\u00a0\u00a0": ["ui-id-267", 1]
},
"Blue": {
"self": ["ui-id-268", 1],
"\u00a0\u00a0\u00a0": ["ui-id-285", 1]
},
"Brown": {
"self": ["ui-id-286", 1],
"\u00a0\u00a0\u00a0": ["ui-id-303", 1]
},
"White": {
"self": ["ui-id-304", 1],
"\u00a0\u00a0\u00a0": ["ui-id-321", 1]
},
"Gray": {
"self": ["ui-id-322", 1],
"\u00a0\u00a0\u00a0": ["ui-id-332", 1]
}
},
"Color Picker": ["ui-id-333", 0],
"-": ["ui-id-180", 0],
"Rainbow (R-V)": {
"self": ["ui-id-334", 0],
"for Selection": ["ui-id-335", 0],
"for Chains": ["ui-id-336", 0],
"for Sets": ["ui-id-337", 0]
},
"Spectrum (V-R)": {
"self": ["ui-id-338", 0],
"for Selection": ["ui-id-339", 0],
"for Chains": ["ui-id-340", 0],
"for Sets": ["ui-id-341", 0]
},
"Secondary": {
"self": ["ui-id-342", 0],
"Sheet in Green": ["ui-id-343", 0],
"Sheet in Yellow": ["ui-id-344", 0],
"Spectrum": ["ui-id-345", 0]
},
"Charge": ["ui-id-346", 0],
"Hydrophobicity": {
"self": ["ui-id-347", 0],
"Normalized": ["ui-id-348", 0],
"Wimley-White": ["ui-id-349", 0]
},
"B-factor": {
"self": ["ui-id-350", 0],
"Original": ["ui-id-351", 0],
"Percentile": ["ui-id-352", 0]
},
"Accessibility": ["ui-id-353", 0],
"Structure": ["ui-id-354", 0],
"Chain": ["ui-id-355", 0],
"3D Domain": ["ui-id-356", 0],
"Defined Sets": {
"self": ["ui-id-357", 0]
},
"Residue": {
"self": ["ui-id-359", 0],
"Default": ["ui-id-360", 0],
"Custom": ["ui-id-361", 0]
},
"Atom": ["ui-id-362", 0],
"Confidence": ["ui-id-363", 0],
"Save Color": ["div0_mn4_clrSave", 0],
"Apply Saved Color": ["div0_mn4_clrApplySave", 0]
},
"\u00a0Analysis": {
"Seq. & Annotations ": ["div0_mn6_selectannotations", 1],
"Aligned Seq. ": ["div0_mn2_alignment", 1],
"2D Cartoon": {
"self": ["ui-id-365", 1],
"Chain Level": ["div0_2dctn_chain", 1],
"Domain Level": ["div0_2dctn_domain", 1],
"Helix/Sheet Level": ["div0_2dctn_secondary", 1]
},
"Defined Sets": ["div0_definedsets2", 1],
"-": ["ui-id-364", 0],
"Interactions": ["div0_mn6_hbondsYes", 1],
"Contact Map": ["div0_mn6_contactmap", 1],
"Mutation ": ["div0_mn1_mutation", 0],
"DelPhi Potential ": ["div0_mn1_delphi", 0],
"Load PQR/Phi": {
"self": ["ui-id-366", 0],
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