fix: deprecation of binom_test in scipy 1.12.0 and cryptic error occurring with incorrect VCFs in cyvcf2 0.30.26

[aryarm]

This PR handles errors that arise when you upgrade to the newest versions of our dependencies, specifically for cyvcf2 and scipy

It resolves #206 and also handles the deprecation of scipy.stats.binom_test in favor of scipy.stats.binomtest: https://docs.scipy.org/doc/scipy/release/1.12.0-notes.html#expired-deprecations

Merging this PR will resolve failures in the CI checks for all of our other PRs

[aryarm]

@LiterallyUniqueLogin, I decided to catch the htslib/cyvcf2 error in all downstream tools that used TRRecordHarmonizer (which was actually just dumpSTR and qcSTR?), since it seemed easy enough

Let me know if there are any other changes we need!

[aryarm]

@LiterallyUniqueLogin, I'm realizing now that this error will probably crop up in any tool that uses cyvcf2, and not just in dumpSTR and qcSTR.

The proper way to handle this is probably to add an equivalent of the BrokenVCF test to every tool, and then use those tests to figure out how to properly catch the exceptions. But tbh those sorts of changes would probably bring this PR beyond what I have the bandwidth for. Also, I kinda doubt that I'm familiar enough with TRTools to be able to write tests like that.

[LiterallyUniqueLogin]

Your reasoning sounds good. Fixing this shouldn't be held up by missing tests for other utilities.