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DumpSTR: Without --drop-filter, the output shows HET=-1 locus #177

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Paddy1401 opened this issue Feb 10, 2023 · 1 comment
Open

DumpSTR: Without --drop-filter, the output shows HET=-1 locus #177

Paddy1401 opened this issue Feb 10, 2023 · 1 comment

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@Paddy1401
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@Paddy1401 Paddy1401 changed the title Without --drop-filter, the output shows HET=-1 locus DumpSTR: Without --drop-filter, the output shows HET=-1 locus Feb 10, 2023
@Paddy1401
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dumpSTR --vcf input.vcf --out output --min-locus-het 0 --max-locus-het 0.9.
This is the command I used, if I don't use --drop-filter option. The output file contain locus that have HET= -1. Did I make something wrong since from my understand the heteroyzgosity can not be negative. Moreover, I also face issue where the same locus position (i.e.. 12xxxxx) is duplicate or triplicate in the output file

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