diff --git a/README.rst b/README.rst index a3944ede..5eadde7b 100644 --- a/README.rst +++ b/README.rst @@ -100,6 +100,7 @@ TRTools includes the following tools. * `associaTR `_: a tool for testing TR length-phenotype associations (e.g., running a TR GWAS) * `prancSTR `_: a tool for identifying somatic mosacisim at TRs. Currently only compatible with HipSTR VCF files. (*beta mode*) * `simTR `_: a tool for simulating next-generation sequencing reads from TR regions. (*beta mode*) +* `annotaTR `_: a tool for annotating TR VCF files with dosage or other metadata and optionally converting to PGEN output. Type :code:` --help` to see a full set of options. diff --git a/doc/CALLERS.rst b/doc/CALLERS.rst index 695f8efa..a4259ebc 100644 --- a/doc/CALLERS.rst +++ b/doc/CALLERS.rst @@ -83,40 +83,34 @@ TRTools supports TR genotypes produced by any of the above genotypers and then i in this tool suite, unless it's docs specifically say otherwise, that tool can be used on Beagle VCFs as if those VCFs were produced directly by the underlying TR genotyper, with no additional flags or arguments needed, as long as the steps below were followed to make sure the Beagle VCF is properly formatted. -Caveats: +Notes and caveats: * Beagle provides phased best-guess genotypes for each imputed sample at each TR locus. When run with the :code:`ap` or :code:`gp` flags Beagle will also output - probabilities for each possible haplotype/genotype, respectively. These probabilities are also called dosages. While dosages are often more informative for downstream - analyses than the best-guess genotypes located in the :code:`GT` format field (for instance, for association testing), TRTools currently does *not* support dosage - based analyses and instead will only look at the :code:`GT` field. Feel free to submit PRs with features that handle dosages (see the :ref:`Contributing` docs). + probabilities for each possible allele/genotype, respectively. The allele probabilities can be used to compute genotype dosages that take into account imputation uncertainty. The annotaTR utility described below can be used to compute dosages based on the AP fields. These can also be accessed from the TR Harmonizer :code:`TRRecord.GetDosages` function. * At each locus Beagle returns the most probable phased genotype. This will often but not always correspond to the most probable unphased genotype. For instance, it is possible that :code:`P(A|A) > P(A|B)` and :code:`P(A|A) > P(B|A)`, but :code:`P(A/A) = P(A|A) < P(A|B) + P(B|A) = P(A/B)`. Similarly, it is possible that :code:`P(A|B) > P(C|D)` and :code:`P(A|B) > P(D|C)`, but :code:`P(A/B) = P(A|B) + P(B|A) < P(C|D) + P(D|C) = P(C/D)`. TRTools currently does not take this into - account and just uses the phased genotypes returned by Beagle. If you deem this to be an issue, feel free to submit PRs to help TRTools take this into account + account and just uses the phased genotypes returned by Beagle. If you would like to add functionality to support this, feel free to submit PRs to help TRTools take this into account (see the :ref:`Contributing` docs). -* For callers which return sequences, not just lengths (e.g. HipSTR), if there are loci with multiple plausible sequences of the same length, then its possible +* For callers which return sequences, not just lengths (e.g. HipSTR), if there are loci with multiple plausible sequences of the same length, then it's possible that the most probable genotype returned by Beagle does not have the most probable length. For example, the following could be true of a single haplotype: :code:`Len(S_1) = L_1, Len(S_2) = L_1, Len(S_3) = L_2` and :code:`P(S_1) < P(S_3), P(S_2) < P(S_3)` but :code:`P(S_3) < P(S_1) + P(S_2)`. -An overview of steps to perform before Beagle imputation: +See `here `_ for example commands for running Beagle to impute TRs. Some additional notes: -* The samples being imputed into must have directly genotyped loci that are also genotyped in the reference samples. This allows those samples to be 'matched' with samples in the reference. -* The genotypes of both the reference samples and samples of interest must be phased. That can be done by statistically phasing the genotypes prior to running Beagle imputation. -* The referece samples must also not contain any missing genotypes. Possible methods for dealing with that include removing loci with missing genotypes or using imputation to impute - the missing genotypes prior to imputing the TRs. +* VCF files for the samples being imputed into must include genotyped loci (typically SNPs) that are also genotyped in the reference samples. This allows those samples to be 'matched' with samples in the reference. +* The reference samples must be phased and also not contain any missing genotypes. Possible methods for dealing with that include removing loci with missing genotypes or using imputation to impute the missing genotypes prior to imputing the TRs. The reference panel at the link above has already been phased/imputed and should work directly as input to Beagle. -The VCFs that Beagle outputs need to be preprocessed before use by TRTools. We have provided a tool :code:`trtools_prep_beagle_vcf.sh` to run on those VCFs. -After running this script, the files should be usable by any of the tools in TRTools. +The VCFs that Beagle outputs need to be preprocessed before use by TRTools to contain required INFO fields. The :code:`annotaTR` utility provided by TRTools can be used to add this information as well as compute dosages, with the option to output either VCF or PGEN format. +(As of Aug 2024, we had only provided the script :code:`trtools_prep_beagle_vcf.sh` which is still available and can also be used to add the INFO annotations but cannot write to PGEN files or compute dosages). After running either of those tools to annotate Beagle VCFs, the files should be usable by any of the tools in TRTools. -In case of error, it may be useful to know what steps the script attempts to perform: +In case of error, it may be useful to know what steps those tools attempt to perform: -* It copies over source and command meta header lines from the reference panel to the imputed VCF so - that it is clear which genotyper's syntax is being used to represent the STRs in the VCF. -* It copies over contig and ALT lines which is required for downstream tools including mergeSTR and is good practice to include in the VCF header. -* It annotates each STR with the necessary INFO fields from the reference panel that Beagle dropped from the imputed VCF. -* The imputed VCF contains both TR loci and the shared loci (commonly SNPs) that were used for the imputation. - This script removes the non-STR loci (identified as those loci not having STR-specific INFO fields). +* Copy over source and command meta header lines from the reference panel to the imputed VCF so that it is clear which genotyper's syntax is being used to represent the STRs in the VCF. +* Copy over contig and ALT lines which is required for downstream tools including mergeSTR and is good practice to include in the VCF header. +* Annotate each STR with the necessary INFO fields from the reference panel that Beagle dropped from the imputed VCF. +* Removes the non-TR loci (identified as those loci not having TR-specific INFO fields) so that the final output file contains only TRs. .. _Beagle: http://faculty.washington.edu/browning/beagle/beagle.html .. _bcftools: https://samtools.github.io/bcftools/bcftools.html diff --git a/doc/UTILITIES.rst b/doc/UTILITIES.rst index 2b5b0e2e..ba4f61c0 100644 --- a/doc/UTILITIES.rst +++ b/doc/UTILITIES.rst @@ -16,6 +16,7 @@ TRTools offers a variety of command-line tools for performing manipulations to T source/associaTR.rst source/prancSTR.rst source/simTR.rst + source/annotaTR.rst .. Include directives from tool READMEs @@ -51,6 +52,10 @@ TRTools offers a variety of command-line tools for performing manipulations to T :start-after: overview_directive :end-before: overview_directive_done +.. include:: ../trtools/annotaTR/README.rst + :start-after: overview_directive + :end-before: overview_directive_done + :doc:`source/dumpSTR` * |dumpSTR overview| @@ -83,3 +88,7 @@ TRTools offers a variety of command-line tools for performing manipulations to T * |simTR overview| +:doc:`source/annotaTR` + +* |annotaTR overview| + diff --git a/doc/source/annotaTR.rst b/doc/source/annotaTR.rst new file mode 100644 index 00000000..036cc49c --- /dev/null +++ b/doc/source/annotaTR.rst @@ -0,0 +1 @@ +.. include:: ../../trtools/annotaTR/README.rst \ No newline at end of file diff --git a/doc/trtools.annotaTR.rst b/doc/trtools.annotaTR.rst new file mode 100644 index 00000000..cdd432e5 --- /dev/null +++ b/doc/trtools.annotaTR.rst @@ -0,0 +1,5 @@ +trtools.annotaTR module +--------------------------- + +.. automodule:: trtools.annotaTR + :imported-members: \ No newline at end of file diff --git a/example-files/CEU_subset_unindexed.vcf.gz b/example-files/CEU_subset_unindexed.vcf.gz new file mode 100644 index 00000000..4ffef072 Binary files /dev/null and b/example-files/CEU_subset_unindexed.vcf.gz differ diff --git a/example-files/CEU_subset_unzipped.vcf b/example-files/CEU_subset_unzipped.vcf new file mode 100644 index 00000000..12a1dd3e --- /dev/null +++ b/example-files/CEU_subset_unzipped.vcf @@ -0,0 +1,100 @@ +##fileformat=VCFv4.1 +##FILTER= +##command=HipSTR-v0.6.2 --bams 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A12865.final.cram,/projects/ps-gymreklab/resources/datasets/1000Genomes/additional_698_related/NA12875.final.cram,/projects/ps-gymreklab/resources/datasets/1000Genomes/additional_698_related/NA12877.final.cram,/projects/ps-gymreklab/resources/datasets/1000Genomes/additional_698_related/NA12891.final.cram,/projects/ps-gymreklab/resources/datasets/1000Genomes/additional_698_related/NA12892.final.cram --fasta /projects/ps-gymreklab/resources/dbase/human/hg38_full_plus_hla/GRCh38_full_analysis_set_plus_decoy_hla.fa --regions /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs//EUR/CEU/splits/regions/00.txt --str-vcf /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs//EUR/CEU/splits/00/running_out/CEU_00.vcf.gz --max-reads 2000000 +##reference=/projects/ps-gymreklab/resources/dbase/human/hg38_full_plus_hla/GRCh38_full_analysis_set_plus_decoy_hla.fa +##bcftools_concatVersion=1.9+htslib-1.9 +##bcftools_concatCommand=concat -a -f /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs//EUR/CEU/hipstr_outs_concat/file_list.txt -O z -o /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs//EUR/CEU/hipstr_outs_concat/CEU.vcf.gz; Date=Wed Feb 10 11:16:18 2021 +##command-DumpSTR=/projects/ps-gymreklab/mousavi/envs/trtools_venv/bin/dumpSTR --vcf /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs/EUR/CEU/merged/CEU.vcf.gz --out /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs/EUR/CEU/merged/CEU_filtered --vcftype hipstr --min-locus-callrate 0.75 --min-locus-hwep 0.000001 --filter-regions /projects/ps-gymreklab/mousavi/analysis/1000genomes/additional_runtime_files/segdup/hg38_segdup.sorted.bed.gz --filter-regions-names SEGDUP +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FILTER= +##FILTER= +##FILTER= +##bcftools_viewVersion=1.15.1+htslib-1.15.1 +##bcftools_viewCommand=view -Oz -r chr1:987287-2211901,chr2:69464-1933967 /projects/ps-gymreklab/mousavi/results/1000genomes/hipstr_outs/EUR/CEU/merged/CEU_filtered.vcf.gz; Date=Thu Sep 28 16:00:32 2023 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA06984 NA06985 NA06986 NA06989 NA06991 NA06993 NA06994 NA06995 NA06997 NA07000 NA07014 +chr1 987287 Human_STR_285 TTTTTTTTTTTTTTTTGAGA TTTTTTTTTTTTTTTTTGAGA,TTTTTTTTTTTTTTTTTTTGAGA,TTTTTTTTTTTTTTTTTTTTAGA,TTTTTTTTTTTTTTTTTTTTTGT,TTTTTTTTTTTTTTTTTTTTGAGA,TTTTTTTTTTTTTTTTTTTTTAGA,TTTTTTTTTTTTTTTTTTTTTGAGA,TTTTTTTTTTTTTTTTTTTTTGAGT,TTTTTTTTTTTTTTTTTTTTTGATA,TTTTTTTTTTTTTTTTTTTTTGTGA,TTTTTTTTTTTTTTTTTTTTTGTGT,TTTTTTTTTTTTTTTTTTTTTTAGA,TTTTTTTTTTTTTTTTTTTTTTATA,TTTTTTTTTTTTTTTTTTTTTTTGA . PASS INFRAME_PGEOM=0.31;INFRAME_UP=0.01;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=1,3,3,3,4,4,5,5,5,5,5,5,5,5;START=987287;END=987302;PERIOD=1;AN=270;REFAC=2;AC=7,69,7,1,24,4,178,0,0,7,15,54,12,19;NSKIP=0;NFILT=44;DP=4202;DSNP=0;DSTUTTER=204;DFLANKINDEL=375;HET=0.457064;HWEP=0.342779;HRUN=16 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 5|6:4|4:0.99:0.49:35:0:1:4:24.29|10.71:0|0:1.87:-1.62:29:-0.26:-15|2;-5|3;-4|1;0|1;2|1;4|21;6|1:2|1;4|21:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 7|12:5|5:0.83:0.41:30:0:1:3:23.00|7.00:0|0:0.69:-3.07:22:-0.56:-5|3;0|3;5|13;16|1;20|1:0|1;5|14:PASS 7|12:5|5:1:0.5:41:0:2:5:28.25|12.75:0|0:3.27:-2.04:34:-0.53:-5|2;-3|1;0|3;5|25;6|1:1|1;5|23;6|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 7|12:5|5:1:0.5:26:0:0:0:19.96|6.04:0|0:4.15:-2.18:24:-0.93:0|2;5|16:5|18:PASS 7|12:5|5:1:0.5:43:0:0:4:33.62|9.38:0|0:4.72:-4.38:37:-0.52:-15|1;-5|1;-4|1;-3|1;0|3;5|28;6|1:5|27:PASS 7|14:5|5:1:0.5:36:0:1:4:23.09|12.91:0|0:3.6:-1.19:24:-1.19:-13|2;-5|1;-4|2;0|2;4|1;5|19:4|1;5|17:PASS 2|7:3|5:1:0.5:32:0:5:1:15.58|16.42:0|0:6.08:-0:25:0:-17|1;-15|1;0|4;3|9;4|4;5|7:3|11;4|4;5|7:PASS +chr1 988587 Human_STR_286 AAAAAAAAAAAAAAGAAAGAAAAGAAAAGAAAAGA AAAAAAAAAAAAGAAGAAAGAAAAGAAAAGAAAAGA . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.89;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=1;START=988587;END=988621;PERIOD=5;AN=356;REFAC=18;AC=507;NSKIP=1;NFILT=0;DP=8967;DSNP=0;DSTUTTER=10;DFLANKINDEL=215;HET=0.0960106;HWEP=0.798792;HRUN=14 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:47:0:0:3:22.50|24.50:0|0:192.95:-0.06:34:0:-17|1;0|13;1|13;2|1:0|13;1|13:PASS 1|1:1|1:1:1:58:0:0:1:29.00|29.00:0|0:14.45:0:.:0:1|23:1|22:PASS 1|1:1|1:1:1:54:0:0:3:27.00|27.00:0|0:13.27:0:.:0:0|1;1|29:1|28:PASS 1|1:1|1:1:1:54:0:0:1:27.00|27.00:0|0:12.64:0:.:0:1|29:1|29:PASS 1|1:1|1:1:1:44:0:0:2:22.00|22.00:0|0:9.93:0:.:0:1|22:1|20:PASS 1|1:1|1:1:1:49:0:0:0:24.50|24.50:0|0:11.14:0:.:0:1|21:1|21:PASS 1|1:1|1:1:1:36:0:1:0:18.00|18.00:0|0:4.23:0:.:0:1|15:1|15:PASS 1|1:1|1:0.54:0.54:51:0:0:2:25.50|25.50:0|0:0.07:0:.:0:0|1;1|22;2|1:1|22:PASS 1|1:1|1:1:1:58:0:0:3:29.00|29.00:0|0:13.83:0:.:0:1|26;2|1:1|24:PASS 1|1:1|1:1:1:54:0:0:2:27.00|27.00:0|0:12.94:0:.:0:-1|1;1|25;2|1:1|25:PASS 1|1:1|1:1:1:50:0:0:0:25.00|25.00:0|0:11.14:0:.:0:1|19:1|19:PASS +chr1 989984 Human_STR_287 TGTTTTGTTTTGCTTTGTTTTTGTTTT . . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=989984;END=990010;PERIOD=5;AN=356;REFAC=356;AC=0;NSKIP=1;NFILT=0;DP=8937;DSNP=0;DSTUTTER=1;DFLANKINDEL=84;HET=0;HWEP=1;HRUN=5 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|20:0|20:PASS 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:0|26:0|25:PASS 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|41:0|41:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|20:0|20:PASS 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|40:PASS 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS 0|0:0|0:1:1:60:0:0:2:30.00|30.00:0|0:.:0:.:0:0|41:0|39:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|24:0|24:PASS 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|29:PASS +chr1 990299 Human_STR_288 TTTTTTTTTTTTT TTTTTCTTTTTTT,TTTTTTTTTTTTTT . PASS INFRAME_PGEOM=0.7;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,1;START=990299;END=990311;PERIOD=1;AN=358;REFAC=9;AC=522,1;NSKIP=0;NFILT=0;DP=7255;DSNP=0;DSTUTTER=7;DFLANKINDEL=167;HET=0.0544459;HWEP=0.868923;HRUN=13 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:37:0:1:1:17.36|19.64:0|0:34.87:-0.06:34:0:0|29;1|1:0|25;1|1:PASS 1|1:0|0:1:1:30:0:0:0:15.00|15.00:0|0:7.81:0:.:0:0|22:0|21:PASS 1|1:0|0:1:1:36:0:0:1:18.00|18.00:0|0:9.27:0:.:0:0|25:0|24:PASS 1|1:0|0:1:1:45:0:0:0:22.50|22.50:0|0:12.02:0:.:0:0|31:0|28:PASS 1|1:0|0:1:1:32:0:0:0:16.00|16.00:0|0:8.41:0:.:0:0|24:0|21:PASS 1|1:0|0:1:1:44:0:0:1:22.00|22.00:0|0:11.32:0:.:0:0|35:0|28:PASS 1|1:0|0:1:1:47:0:0:2:23.50|23.50:0|0:11.32:0:.:0:0|35:0|29:PASS 1|1:0|0:1:1:44:0:0:1:22.00|22.00:0|0:11.4:0:.:0:0|35:0|29:PASS 1|1:0|0:1:1:41:0:0:0:20.50|20.50:0|0:10.79:0:.:0:0|29:0|27:PASS 1|1:0|0:1:1:41:0:0:0:20.50|20.50:0|0:11.69:0:.:0:0|35:0|29:PASS 1|1:0|0:1:1:41:0:0:1:20.50|20.50:0|0:10.82:0:.:0:0|33:0|28:PASS +chr1 991510 Human_STR_289 TTTCATTTTCTTTTCTTTTCTTTTTTTTTCTTTT TTTCATTTTCTTTTCTTTTGTTTTTTTTTCTTTT,TTTCATTTTCTTTTCTTTTCTTTTTTTTTTCTTTT . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,1;START=991510;END=991543;PERIOD=5;AN=356;REFAC=352;AC=1,4;NSKIP=1;NFILT=0;DP=9327;DSNP=0;DSTUTTER=3;DFLANKINDEL=126;HET=0.0222668;HWEP=0.801714;HRUN=9 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:1:16.00|16.00:0|0:7.54:0:.:0:0|18:0|17:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:9.93:0:.:0:0|24:0|24:PASS 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:12.31:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:6.92:0:.:0:0|17:0|16:PASS 0|0:0|0:1:1:51:0:0:2:25.50|25.50:0|0:12.04:0:.:0:0|25;6|1:0|24:PASS 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:12.04:0:.:0:0|25;17|1:0|25:PASS 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:9.93:0:.:0:0|21:0|21:PASS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:10.52:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:66:0:0:2:33.00|33.00:0|0:11.44:0:.:0:0|23:0|22:PASS 0|0:0|0:1:1:46:0:0:2:23.00|23.00:0|0:8.8:0:.:0:0|22:0|20:PASS 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:11.74:0:.:0:0|29:0|28:PASS +chr1 992151 Human_STR_290 GTTTTTTTGTTTGTTTGTTTGTTTTTTG . . PASS INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=992151;END=992178;PERIOD=4;AN=356;REFAC=356;AC=0;NSKIP=1;NFILT=0;DP=8849;DSNP=0;DSTUTTER=1;DFLANKINDEL=38;HET=0;HWEP=1;HRUN=7 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|33:0|33:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|23:0|23:PASS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|33:0|33:PASS 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|22:0|21:PASS 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|27:0|26:PASS 0|0:0|0:1:1:37:0:0:1:18.50|18.50:0|0:.:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|18:0|17:PASS 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|28:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|26:0|26:PASS +chr1 994322 Human_STR_291 AAAAAAAAAAAAA AAAAAAAAAAAAAA . PASS INFRAME_PGEOM=0.9;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=1;START=994322;END=994334;PERIOD=1;AN=356;REFAC=86;AC=405;NSKIP=0;NFILT=1;DP=6414;DSNP=0;DSTUTTER=55;DFLANKINDEL=205;HET=0.366431;HWEP=0.484021;HRUN=13 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:28:0:0:2:13.14|14.86:0|0:12.61:-0.08:22:-0.18:-4|1;0|10;1|12;10|1:0|9;1|11:PASS 1|1:1|1:1:1:39:0:0:0:19.50|19.50:0|0:10.05:0:.:0:-4|1;1|33:1|32:PASS 1|1:1|1:1:1:34:0:0:0:17.00|17.00:0|0:9.57:0:.:0:1|32:1|32:PASS 0|1:0|1:1:0.5:34:0:0:2:13.81|20.19:0|0:12.53:-0.58:29:-0.33:0|12;1|18:0|10;1|16:PASS 1|1:1|1:1:1:38:0:0:2:19.00|19.00:0|0:9.57:0:.:0:-10|1;-4|1;1|31;14|1:1|30:PASS 1|1:1|1:1:1:35:0:2:1:17.50|17.50:0|0:7.9:0:.:0:-10|2;-4|2;-1|1;1|24;2|1;4|1:-1|1;1|23;2|1:PASS 0|1:0|1:1:0.5:36:0:0:1:12.47|23.53:0|0:9.79:-1.15:31:-0.15:0|10;1|20:0|8;1|20:PASS 1|1:1|1:1:1:40:0:0:2:20.00|20.00:0|0:8.38:0:.:0:-10|1;1|28;3|1:1|26:PASS 1|1:1|1:1:1:34:0:1:1:17.00|17.00:0|0:7.13:0:.:0:1|24;2|1:1|21;2|1:PASS 1|1:1|1:1:1:32:0:1:0:16.00|16.00:0|0:7.12:0:.:0:-10|1;0|1;1|24:0|1;1|21:PASS 0|1:0|1:1:0.5:27:0:0:0:7.99|19.01:0|0:5.89:-1.36:25:-0.75:0|7;1|18:0|7;1|16:PASS +chr1 995509 Human_STR_292 TTTTTTTTTTTTT TTTTTTTT,TTTCTTTTTTTTT . PASS INFRAME_PGEOM=0.99;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-5,0;START=995509;END=995521;PERIOD=1;AN=358;REFAC=10;AC=321,201;NSKIP=0;NFILT=0;DP=7936;DSNP=0;DSTUTTER=6;DFLANKINDEL=22;HET=0.501795;HWEP=0.601081;HRUN=13 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:43:0:0:0:24.00|19.00:0|0:70.92:-0.28:39:-0.12:-5|17;0|20:-5|16;0|19:PASS 1|1:-5|-5:1:1:59:0:0:0:29.50|29.50:0|0:15.6:0:.:0:-5|51:-5|49:PASS 2|1:0|-5:1:0.5:36:0:0:0:19.50|16.50:0|0:58.5:-0.13:35:-0.15:-5|14;0|13:-5|14;0|12:PASS 2|2:0|0:1:1:32:0:0:0:14.50|17.50:0|0:33.86:0:.:0:0|24:0|24:PASS 1|1:-5|-5:0.56:0.56:38:0:0:1:19.00|19.00:0|0:0.11:0:.:0:-5|32:-5|31:PASS 2|1:0|-5:1:0.5:49:0:0:0:22.00|27.00:0|0:69.23:-0.25:49:-0.81:-5|24;0|16:-5|22;0|12:PASS 2|2:0|0:1:1:45:0:0:0:20.00|25.00:0|0:44.3:0:.:0:0|35:0|30:PASS 2|1:0|-5:1:0.5:40:0:0:2:26.50|13.50:0|0:74.88:-1.33:37:-0.56:-5|8;0|18;1|1:-5|8;0|15:PASS 1|1:-5|-5:1:1:52:0:0:0:26.00|26.00:0|0:14.4:0:.:0:-5|46:-5|45:PASS 1|1:-5|-5:1:1:50:0:0:0:25.00|25.00:0|0:13.45:0:.:0:-5|44:-5|42:PASS 2|1:0|-5:1:0.5:47:0:0:0:20.00|27.00:0|0:62.28:-0.44:43:-0.12:-5|23;0|17:-5|23;0|16:PASS +chr1 998740 Human_STR_293 GGATGCGGAGGGGAGGGCGCGGAGCGGAGGGCGCGGAGCGGAGGG GAATGCGGAGGGGAGGGCGCGGAGGGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGCGGAGGGCGCGGAGCGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGGGGAGGGCGCGGAGGGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGCGGAGGGCGCGGAGCGGAGGGCGCGGAGCGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGGGGAGGGCGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGG,GGATGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGA,GGATGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGGG . CALLRATE0.75 INFRAME_PGEOM=0.77;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.09;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,0,0,5,14,19,24,24;START=998744;END=998782;PERIOD=5;AN=108;REFAC=8;AC=60,49,0,0,3,12,7,18;NSKIP=1;NFILT=124;DP=3033;DSNP=0;DSTUTTER=24;DFLANKINDEL=129;HET=0.733368;HWEP=0.21804;HRUN=4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|7:0|24:1:0.5:66:0:0:0:31.00|35.00:0|0:80.36:-0.15:66:-0.33:-12|3;-10|1;-6|2;-3|1;0|14;8|1;24|8:0|14;24|9:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|8:0|24:1:0.5:48:0:1:3:22.00|26.00:0|0:39.33:-0.21:36:0:-21|1;-11|1;-10|1;-6|1;-4|2;0|11;5|2;24|5:0|11;24|6:PASS 2|1:0|0:1:0.5:66:0:0:1:30.51|35.49:0|0:69.37:-0.21:65:-0.21:0|31:0|30:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|2:0|0:1:0.5:56:0:0:2:25.50|30.50:0|0:69.23:-0.25:49:0:0|25;3|1:0|25:PASS 2|8:0|24:1:0.5:63:0:4:9:35.28|27.72:0|0:5.69:-0.42:47:0:-39|1;-10|2;-9|1;-8|7;-6|4;-1|1;0|15;4|1;13|1:0|15:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1002183 Human_STR_294 TTTTTATTTATTTTTTTTTT TTTTTATTTATTTTTTTTT,TTTTTATTTATTTATTTTTTT,TTTTTATTTATTTTTTTTTTT . PASS INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1,1,1;START=1002183;END=1002202;PERIOD=1;AN=358;REFAC=272;AC=1,73,54;NSKIP=0;NFILT=0;DP=8728;DSNP=0;DSTUTTER=27;DFLANKINDEL=75;HET=0.393886;HWEP=0.818911;HRUN=10 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:10.19:0:.:0:0|30:0|28:PASS 0|0:0|0:1:1:54:0:0:1:27.99|26.01:0|0:31.06:0:.:0:0|34:0|32:PASS 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:7.21:0:.:0:0|22:0|19:PASS 0|2:0|1:1:0.5:55:0:0:2:30.50|24.50:0|0:68.91:-0.33:48:-0.42:0|25;1|18:0|23;1|14:PASS 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:10.82:0:.:0:0|40;1|1:0|36;1|1:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:9.61:0:.:0:0|31:0|30:PASS 0|2:0|1:1:0.5:56:0:0:1:34.99|21.01:0|0:48.28:-1.31:44:-0.29:0|24;1|11:0|20;1|11:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:10.51:0:.:0:0|31:0|28:PASS 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:9.01:0:.:0:0|27:0|23:PASS 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:15.01:0:.:0:0|44:0|39:PASS 0|2:0|1:1:0.5:51:0:0:0:21.00|30.00:0|0:35.4:-0.7:39:-0.48:0|11;1|20:0|11;1|17:PASS +chr1 1002414 Human_STR_295 ACTTTTTTTTTTTTTTTTTTTTGA ACATTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTGA,ACTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTTTA,AAATTTTTTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTTTGT,ACATTTTTTTTTTTTTTTTTTTTTTTTTA,ACATTTTTTTTTTTTTTTTTTTTTTTTTT,ACATTTTTTTTTTTTTTTTTTTTTTTTTGA,ACATTTTTTTTTTTTTTTTTTTTTTTTTTA . PASS INFRAME_PGEOM=0.69;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-2,-1,-1,0,3,4,4,5,5,5,5,5,6,6;START=1002416;END=1002435;PERIOD=1;AN=346;REFAC=9;AC=1,66,3,3,6,121,12,1,189,1,43,27,21,7;NSKIP=2;NFILT=4;DP=7499;DSNP=0;DSTUTTER=266;DFLANKINDEL=379;HET=0.65779;HWEP=0.297521;HRUN=20 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|9:0|5:1:0.5:54:0:2:0:26.28|27.72:0|0:24.57:-0:45:-0.12:-23|1;-16|1;-15|1;0|14;4|1;5|13;8|1:0|14;4|1;5|13:PASS 9|11:5|5:0.57:0.28:46:0:2:1:32.98|13.02:0|0:0.38:-3.49:30:-2.04:0|1;4|1;5|18;6|1;7|1;15|1:4|1;5|16;7|1:PASS 2|9:-1|5:0.96:0.48:34:0:1:2:17.51|16.49:0|0:1.37:-0:23:0:-1|12;4|1;5|9;6|1:-1|12;4|1;5|8:PASS 2|6:-1|4:1:0.5:50:0:5:1:25.07|24.93:0|0:14.75:0:38:0:-12|1;-1|18;0|1;3|4;4|10;5|1:-1|16;3|4;4|9:PASS 9|11:5|5:0.84:0.42:47:0:1:4:33.08|13.92:0|0:0.72:-2.84:30:-2.81:-23|2;3|1;5|22;11|1;15|1:3|1;5|18:PASS 2|9:-1|5:1:0.5:40:0:1:2:16.01|23.99:0|0:10.53:-0.82:24:-0.17:-23|2;-1|8;0|1;5|11:-1|8;5|8:PASS 2|6:-1|4:1:0.5:51:0:0:4:26.04|24.96:0|0:23.61:-0.06:34:-0.31:-1|17;4|15;15|1:-1|14;4|13:PASS 2|9:-1|5:1:0.5:46:0:0:2:22.00|24.00:0|0:23.74:-0.13:35:-0.13:-15|1;-1|15;0|1;5|16;8|1:-1|15;5|14:PASS 9|11:5|5:0.97:0.48:48:0:1:1:32.81|15.19:0|0:1.51:-2.48:31:-2.17:5|25;8|1:5|22;8|1:PASS 9|12:5|5:0.99:0.49:50:0:0:2:36.13|13.87:0|0:1.94:-3.71:34:-0.44:-23|1;5|25:5|20:PASS 6|9:4|5:1:0.5:51:0:1:0:28.36|22.64:0|0:6.61:-0.58:20:0:-23|1;-16|1;-8|1;4|12;5|6;6|1:4|12;5|5;6|1:PASS +chr1 1002641 Human_STR_296 TTTTTTTTTTTCTTTTTT . . PASS INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1002641;END=1002658;PERIOD=1;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=7425;DSNP=0;DSTUTTER=62;DFLANKINDEL=104;HET=0;HWEP=1;HRUN=11 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|23:0|20:PASS 0|0:0|0:1:1:33:0:1:0:16.50|16.50:0|0:.:0:.:0:-17|1;0|20:0|17:PASS 0|0:0|0:1:1:44:0:1:1:22.00|22.00:0|0:.:0:.:0:-1|1;0|32:-1|1;0|27:PASS 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|23:0|19:PASS 0|0:0|0:1:1:39:0:2:0:19.50|19.50:0|0:.:0:.:0:-1|2;0|23:-1|1;0|20:PASS 0|0:0|0:1:1:34:0:1:0:17.00|17.00:0|0:.:0:.:0:-1|1;0|23:-1|1;0|22:PASS 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|21:0|20:PASS 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|21:0|20:PASS 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|22:0|18:PASS 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|29:0|27:PASS 0|0:0|0:1:1:48:0:0:2:24.00|24.00:0|0:.:0:.:0:0|32:0|28:PASS +chr1 1007589 Human_STR_297 AAAAAGAAAAAGAAAAGAAAAAAGAAAAAG . . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1007589;END=1007618;PERIOD=6;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=7768;DSNP=0;DSTUTTER=1;DFLANKINDEL=25;HET=0;HWEP=1;HRUN=6 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|18:0|18:PASS 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|18:0|18:PASS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|16:0|16:PASS 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|16:0|16:PASS 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|24:0|24:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|19:0|20:PASS 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|20:0|21:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|23:0|23:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|17:0|17:PASS 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|26:0|28:PASS 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|23:0|23:PASS +chr1 1007747 Human_STR_298 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG TTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG . PASS INFRAME_PGEOM=0.76;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-24,-15,-15,-14,-14,-13,-5,1;START=1007747;END=1007780;PERIOD=1;AN=350;REFAC=6;AC=69,195,27,177,40,1,1,3;NSKIP=0;NFILT=4;DP=7188;DSNP=0;DSTUTTER=146;DFLANKINDEL=368;HET=0.631837;HWEP=0.695584;HRUN=34 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|2:0|-15:1:0.5:38:0:2:2:15.22|22.78:0|0:2.56:-0.72:21:0:-16|1;-15|11;0|4:-16|1;-15|11;0|1:PASS 2|3:-15|-15:0.89:0.44:42:0:1:4:32.54|9.46:0|0:0.9:-4.18:33:-0.54:-15|29;-14|1:-15|24;-14|1:PASS 2|4:-15|-14:0.99:0.5:40:0:1:4:17.77|22.23:0|0:2.12:-0.44:19:0:-15|8;-14|12;-13|1;6|1:-15|5;-14|11;-13|1:PASS 4|5:-14|-14:1:0.5:43:0:0:0:26.47|16.53:0|0:15.87:-1.01:30:-2.8:-14|27:-14|26:PASS 1|2:-24|-15:1:0.5:28:0:0:2:11.49|16.51:0|0:22.9:-0.48:17:0:-24|6;-15|12:-24|6;-15|11:PASS 1|4:-24|-14:1:0.5:36:0:0:0:13.00|23.00:0|0:22.03:-1.06:28:0:-24|9;-14|14:-24|9;-14|12:PASS 4|5:-14|-14:0.83:0.42:21:0:1:0:15.97|5.03:0|0:0.92:-1.9:17:-1.08:-14|9;-13|1:-14|9:PASS 2|4:-15|-14:1:0.5:47:0:0:3:28.99|18.01:0|0:3.65:-1.21:29:-0.15:-15|19;-14|6;-13|3:-15|17;-14|5:PASS 2|3:-15|-15:1:0.5:48:0:2:1:37.60|10.40:0|0:3.28:-5.08:40:-0.82:-15|29;-14|2:-15|26;-14|2:PASS 1|2:-24|-15:1:0.5:52:0:1:0:27.65|24.35:0|0:27.89:-0.13:39:-0.47:-24|21;-15|16:-24|20;-15|14:PASS 2|4:-15|-14:1:0.5:51:0:1:2:22.28|28.72:0|0:12.51:-0.51:35:-0.66:-15|14;-14|20;-13|2:-15|10;-14|18:PASS +chr1 1008504 Human_STR_299 TTGTTTGTTTTGTTTGTTTGTTTCTTTCTTTCTTT TTGTTTGTTTTGTTTGTTTGTTTGTTTCTTTCTTT . PASS INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0;START=1008504;END=1008538;PERIOD=4;AN=358;REFAC=14;AC=516;NSKIP=0;NFILT=0;DP=8358;DSNP=0;DSTUTTER=2;DFLANKINDEL=41;HET=0.0751537;HWEP=0.886786;HRUN=4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:45:0:0:0:26.43|18.57:0|0:40.5:-0.59:38:0:0|22:0|21:PASS 1|1:0|0:1:1:47:0:0:1:23.50|23.50:0|0:9.03:0:.:0:0|20:0|18:PASS 1|1:0|0:1:1:46:0:0:1:23.00|23.00:0|0:10.82:0:.:0:0|22:0|21:PASS 1|1:0|0:1:1:36:0:0:0:18.00|18.00:0|0:7.81:0:.:0:0|16:0|15:PASS 1|1:0|0:1:1:37:0:0:0:18.50|18.50:0|0:8.43:0:.:0:0|21:0|21:PASS 1|1:0|0:1:1:48:0:0:0:24.00|24.00:0|0:12.04:0:.:0:0|26:0|25:PASS 1|1:0|0:1:1:45:0:0:1:22.50|22.50:0|0:10.53:0:.:0:-25|1;0|23:0|23:PASS 1|1:0|0:1:1:48:0:0:0:24.00|24.00:0|0:11.44:0:.:0:0|27:0|27:PASS 1|1:0|0:1:1:45:0:0:0:22.50|22.50:0|0:10.54:0:.:0:0|21:0|20:PASS 1|1:0|0:1:1:38:0:0:0:19.00|19.00:0|0:9.33:0:.:0:0|20:0|19:PASS 1|1:0|0:1:1:39:0:0:0:19.50|19.50:0|0:8.73:0:.:0:0|15:0|15:PASS +chr1 1008994 Human_STR_300 TTTTTTTTTTT . . PASS INFRAME_PGEOM=0.94;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1008994;END=1009004;PERIOD=1;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=6896;DSNP=0;DSTUTTER=55;DFLANKINDEL=92;HET=0;HWEP=1;HRUN=11 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:1:0:22.00|22.00:0|0:.:0:.:0:-1|1;0|36:-1|1;0|33:PASS 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|28:0|26:PASS 0|0:0|0:1:1:36:0:1:1:18.00|18.00:0|0:.:0:.:0:0|27;1|1:0|24;1|1:PASS 0|0:0|0:1:1:33:0:1:1:16.50|16.50:0|0:.:0:.:0:-6|1;-1|1;0|28:-1|1;0|26:PASS 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|37:0|35:PASS 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-1|1;0|42:-1|1;0|38:PASS 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|21:0|18:PASS 0|0:0|0:1:1:37:0:1:2:18.50|18.50:0|0:.:0:.:0:0|32;1|1:0|30;1|1:PASS 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|37:0|34:PASS 0|0:0|0:1:1:40:0:0:2:20.00|20.00:0|0:.:0:.:0:0|34;5|1:0|33:PASS 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|35:PASS +chr1 1009677 Human_STR_301 TCAAAAAAAAAAAAAAGAAAA TCAAAAAAAAAAAAAGAAAA,TAAAAAAAAAAAAAAAGAAAA,TCAAAAAAAAAAAAAAAGAAAA . PASS INFRAME_PGEOM=0.84;INFRAME_UP=0.01;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1,0,1;START=1009679;END=1009697;PERIOD=1;AN=358;REFAC=338;AC=1,25,3;NSKIP=0;NFILT=0;DP=6975;DSNP=0;DSTUTTER=77;DFLANKINDEL=187;HET=0.0166505;HWEP=0.773851;HRUN=14 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|2:0|0:1:0.5:41:0:0:2:32.44|8.56:0|0:5.32:-4.16:36:-0.25:0|34:0|29:PASS 0|0:0|0:1:1:26:0:0:1:13.00|13.00:0|0:2.85:0:.:0:0|17:0|14:PASS 0|0:0|0:0.47:0.47:35:0:0:0:17.50|17.50:0|0:-0.05:0:.:0:0|20:0|18:PASS 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:4.33:0:.:0:0|26:0|26:PASS 0|2:0|0:1:0.5:30:0:1:0:23.86|6.14:0|0:2.45:-3.27:26:-0.39:0|18:0|17:PASS 0|0:0|0:0.98:0.98:43:0:2:2:21.50|21.50:0|0:1.67:0:.:0:0|32;1|1;4|1:0|29;1|1:PASS 0|0:0|0:1:1:44:0:1:1:22.00|22.00:0|0:7.58:0:.:0:-1|1;0|33:-1|1;0|32:PASS 0|0:0|0:1:1:41:0:2:2:20.50|20.50:0|0:3.67:0:.:0:-5|1;-1|1;0|29;10|1:-5|1;-1|1;0|27:PASS 0|2:0|0:1:0.5:46:0:1:1:34.36|11.64:0|0:2.55:-4.18:33:-0.54:0|31:0|26;1|1:PASS 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:4.87:0:.:0:0|31:0|29:PASS 0|0:0|0:0.99:0.99:52:0:1:1:26.00|26.00:0|0:1.82:0:.:0:0|33:0|28:PASS +chr1 1010482 Human_STR_302 TTATTTATTTATTTATTTGAATCTTATTTAAATATTTTATTTATTTGTTTATT TTATTTATTTATTTGAATCTTATTTAAATATTTTATTTATTTGTTTATT,TTATTTATTTATTTATTTGAATCTTATTTAAATATTTTATTTATTTGTTCATT . PASS INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-4,0;START=1010482;END=1010534;PERIOD=4;AN=352;REFAC=11;AC=507,3;NSKIP=0;NFILT=3;DP=9501;DSNP=0;DSTUTTER=2;DFLANKINDEL=28;HET=0.0767691;HWEP=0.88697;HRUN=4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:56:0:0:0:31.50|24.50:0|0:45.99:-0.49:37:-0.3:-4|9;0|12:-4|9;0|12:PASS 1|1:-4|-4:1:1:53:0:0:0:26.50|26.50:0|0:9.33:0:.:0:-4|20:-4|19:PASS 1|1:-4|-4:1:1:53:0:0:0:26.50|26.50:0|0:8.73:0:.:0:-4|15:-4|15:PASS 1|1:-4|-4:1:1:50:0:0:0:25.00|25.00:0|0:9.63:0:.:0:-4|21:-4|21:PASS 1|1:-4|-4:1:1:58:0:0:0:29.00|29.00:0|0:10.23:0:.:0:-4|21:-4|20:PASS 1|1:-4|-4:1:1:54:0:0:1:27.00|27.00:0|0:10.04:0:.:0:-4|24:-4|22:PASS 1|1:-4|-4:1:1:48:0:0:0:24.00|24.00:0|0:7.83:0:.:0:-4|18:-4|18:PASS 1|1:-4|-4:1:1:53:0:0:0:26.50|26.50:0|0:10.84:0:.:0:-4|22:-4|21:PASS 1|1:-4|-4:1:1:67:0:0:1:33.50|33.50:0|0:12.04:0:.:0:-4|25:-4|24:PASS 1|1:-4|-4:1:1:64:0:0:0:32.00|32.00:0|0:13.55:0:.:0:-4|32:-4|32:PASS 1|1:-4|-4:1:1:57:0:0:0:28.50|28.50:0|0:10.84:0:.:0:-4|23:-4|21:PASS +chr1 1010748 Human_STR_303 TTTTTTTTTTTTTTTTTT TTTTTTGTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT . PASS INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1,1;START=1010748;END=1010765;PERIOD=1;AN=358;REFAC=11;AC=516,3;NSKIP=0;NFILT=0;DP=7578;DSNP=0;DSTUTTER=44;DFLANKINDEL=103;HET=0.0755282;HWEP=0.887081;HRUN=18 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:45:0:0:2:27.50|17.50:0|0:63.97:-0.84:38:-0.48:-1|11;0|23:-1|9;0|22:PASS 1|1:-1|-1:1:1:41:0:0:1:20.50|20.50:0|0:10.22:0:.:0:-1|27;0|1:-1|25:PASS 1|1:-1|-1:1:1:36:0:0:0:18.00|18.00:0|0:8.43:0:.:0:-1|23;0|1:-1|21:PASS 1|1:-1|-1:1:1:36:0:0:0:18.00|18.00:0|0:9.33:0:.:0:-1|23;0|1:-1|23:PASS 1|1:-1|-1:1:1:40:0:0:0:20.00|20.00:0|0:11.14:0:.:0:-1|30:-1|28:PASS 1|1:-1|-1:1:1:42:0:0:2:21.00|21.00:0|0:10.31:0:.:0:-1|34;0|2:-1|31:PASS 1|1:-1|-1:1:1:42:0:0:0:21.00|21.00:0|0:11.74:0:.:0:-1|36:-1|36:PASS 1|1:-1|-1:1:1:50:0:0:0:25.00|25.00:0|0:12.94:0:.:0:-1|34;0|1:-1|31:PASS 1|1:-1|-1:1:1:42:0:0:0:21.00|21.00:0|0:9.63:0:.:0:-1|25;0|1:-1|26:PASS 1|1:-1|-1:1:1:45:0:0:1:22.50|22.50:0|0:12.04:0:.:0:-1|35;0|2:-1|35:PASS 1|1:-1|-1:1:1:40:0:0:1:20.00|20.00:0|0:10.54:0:.:0:-1|28;0|1:-1|24:PASS +chr1 1012547 Human_STR_304 TTTTTTTTTTATTTTTATTTTTT TTTTTTTTTATTTTTATTTTTT . PASS INFRAME_PGEOM=0.92;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1;START=1012547;END=1012569;PERIOD=1;AN=358;REFAC=356;AC=3;NSKIP=0;NFILT=0;DP=8376;DSNP=0;DSTUTTER=51;DFLANKINDEL=118;HET=0.0111108;HWEP=0.727806;HRUN=10 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:8.73:0:.:0:0|21:0|18:PASS 0|0:0|0:1:1:46:0:1:1:23.00|23.00:0|0:7.54:0:.:0:-1|1;0|30:-1|1;0|26:PASS 0|0:0|0:1:1:38:0:0:2:19.00|19.00:0|0:9.93:0:.:0:0|31:0|28:PASS 0|0:0|0:1:1:47:0:0:4:23.50|23.50:0|0:8.95:0:.:0:-1|1;0|34:0|28:PASS 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:11.14:0:.:0:0|32:0|30:PASS 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:10.23:0:.:0:0|27:0|24:PASS 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:7.46:0:.:0:0|22:0|19:PASS 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:12.94:0:.:0:0|38:0|37:PASS 0|0:0|0:1:1:41:0:1:0:20.50|20.50:0|0:7:0:.:0:0|29:-1|1;0|27:PASS 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:15.28:0:.:0:0|45:0|42:PASS 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:11.14:0:.:0:0|35:0|31:PASS +chr1 1015668 Human_STR_305 GGGCAGGGCAGGGCAGGGC . . PASS INFRAME_PGEOM=0.79;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.76;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1015668;END=1015686;PERIOD=5;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=7781;DSNP=0;DSTUTTER=2;DFLANKINDEL=19;HET=0;HWEP=1;HRUN=3 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|22:0|22:PASS 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|22:0|22:PASS 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|38:PASS 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|29:0|29:PASS 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|30:0|30:PASS 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|31:0|31:PASS 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|25:0|25:PASS 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|28:PASS 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS +chr1 1016061 Human_STR_306 TTTTTTTTTTTTTTTT TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT . PASS INFRAME_PGEOM=0.79;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1,1;START=1016061;END=1016076;PERIOD=1;AN=304;REFAC=248;AC=84,0;NSKIP=2;NFILT=25;DP=5592;DSNP=0;DSTUTTER=98;DFLANKINDEL=452;HET=0.300554;HWEP=0.929784;HRUN=16 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:4:18.50|18.50:0|0:8.32:0:.:0:0|32:0|26:PASS 0|0:0|0:1:1:34:0:2:2:17.00|17.00:0|0:2.38:0:.:0:-1|2;0|22;17|1:-1|2;0|21:PASS 0|0:0|0:1:1:19:0:0:0:9.50|9.50:0|0:4.17:0:.:0:0|15:0|13:PASS 0|1:0|-1:1:0.5:34:0:0:2:20.42|13.58:0|0:12.62:-0.64:25:-0.17:-17|1;-1|8;0|17:-1|8;0|14:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:33:0:0:4:16.50|16.50:0|0:7.16:0:.:0:-1|1;0|25;4|1:0|20:PASS 0|1:0|-1:1:0.5:44:0:0:6:22.00|22.00:0|0:22.56:-0:31:0:-1|17;0|14;1|1:-1|13;0|12:PASS 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:5.64:0:.:0:0|19:0|17:PASS 0|0:0|0:1:1:39:0:1:3:19.50|19.50:0|0:5.75:0:.:0:0|28:0|21:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|1:0|-1:1:0.5:35:0:0:4:15.57|19.43:0|0:11.41:-0.28:22:-0.18:-1|12;0|11:-1|10;0|5:PASS +chr1 1016678 Human_STR_307 TTTTGTATTTGTTTTGTTTTGT TTTTGTATTTGTTGTTTTGT . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-2;START=1016678;END=1016699;PERIOD=5;AN=358;REFAC=355;AC=4;NSKIP=0;NFILT=0;DP=7991;DSNP=0;DSTUTTER=0;DFLANKINDEL=87;HET=0.0166193;HWEP=0.773429;HRUN=4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:11.57:0:.:0:0|24:0|24:PASS 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:9.33:0:.:0:-14|1;0|23:0|23:PASS 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:9.63:0:.:0:0|24:0|23:PASS 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:10.84:0:.:0:-3|1;0|26;11|1:0|26:PASS 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:9.03:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:11.74:0:.:0:0|26:0|25:PASS 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:11.14:0:.:0:0|23:0|22:PASS 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:10.79:0:.:0:0|24:0|24:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:9.93:0:.:0:0|21:0|21:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:12.04:0:.:0:0|31:0|31:PASS 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:12.07:0:.:0:0|27:0|26:PASS +chr1 1017115 Human_STR_308 TTTTTTTTTTTT TTATTTTTTTTT,TTTTTTTTTTTTT . PASS INFRAME_PGEOM=0.92;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,1;START=1017115;END=1017126;PERIOD=1;AN=358;REFAC=221;AC=1,202;NSKIP=0;NFILT=0;DP=7407;DSNP=0;DSTUTTER=37;DFLANKINDEL=85;HET=0.473253;HWEP=0.331042;HRUN=12 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:10.11:0:.:0:0|34:0|29:PASS 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:9.55:0:.:0:0|33:0|28:PASS 0|2:0|1:1:0.5:34:0:0:2:14.45|19.55:0|0:19.17:-0.31:33:-0:-15|2;0|16;1|16:0|13;1|13:PASS 2|2:1|1:1:1:39:0:0:0:19.50|19.50:0|0:8.99:0:.:0:0|1;1|29:1|25:PASS 0|0:0|0:1:1:34:0:1:0:17.00|17.00:0|0:5.63:0:.:0:0|27:0|23:PASS 0|2:0|1:1:0.5:38:0:0:0:20.90|17.10:0|0:24.87:-0.22:32:-0.15:0|19;1|13:0|15;1|12:PASS 2|2:1|1:1:1:38:0:0:2:19.00|19.00:0|0:8.99:0:.:0:0|1;1|30;2|1:1|26:PASS 0|2:0|1:1:0.5:33:0:0:0:13.97|19.03:0|0:16.34:-0.34:29:-0.15:0|12;1|16:0|11;1|15:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:9.82:0:.:0:0|32:0|26:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:12.2:0:.:0:0|40:0|36:PASS 0|2:0|1:1:0.5:50:0:0:0:22.44|27.56:0|0:23.79:-0.28:39:-0.69:0|18;1|20:0|17;1|19:PASS +chr1 1019470 Human_STR_309 GGCGGGGCCTGGGGGGGCGGGGCCGGGAGGGGCGGGGC GGCGGGGCCTGGGGGGCGGGGCCGGGAGGGGCGGGGC . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.87;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-1;START=1019470;END=1019507;PERIOD=5;AN=352;REFAC=147;AC=307;NSKIP=2;NFILT=1;DP=8394;DSNP=0;DSTUTTER=4;DFLANKINDEL=273;HET=0.486425;HWEP=0.940031;HRUN=7 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:43:0:0:1:22.50|20.50:0|0:165.55:-0.07:32:-0.15:-1|8;0|13:-1|7;0|13:PASS 1|1:-1|-1:1:1:48:0:0:1:24.00|24.00:0|0:9.03:0:.:0:-1|19:-1|18:PASS 0|1:0|-1:1:0.5:32:0:0:0:20.78|11.22:0|0:86.85:-1.12:26:-0.42:-1|6;0|13:-1|6;0|13:PASS 0|0:0|0:1:1:49:0:0:3:24.50|24.50:0|0:9.63:0:.:0:0|22:0|20:PASS 1|1:-1|-1:1:1:44:0:0:0:22.00|22.00:0|0:10.84:0:.:0:-1|27:-1|27:PASS 0|1:0|-1:1:0.5:47:0:0:0:27.50|19.50:0|0:169.78:-0.61:36:-0.14:-1|12;0|15:-1|12;0|15:PASS 0|0:0|0:1:1:38:0:0:2:19.00|19.00:0|0:8.06:0:.:0:0|22:0|20:PASS 0|1:0|-1:1:0.5:41:0:0:1:24.50|16.50:0|0:119.12:-0.67:32:0:-1|8;0|13:-1|8;0|13:PASS 1|1:-1|-1:1:1:48:0:0:0:24.00|24.00:0|0:11.72:0:.:0:-1|31:-1|31:PASS 1|1:-1|-1:1:1:50:0:0:1:25.00|25.00:0|0:10.28:0:.:0:-1|21:-1|20:PASS 0|1:0|-1:1:0.5:38:0:0:1:21.00|17.00:0|0:107.59:-0.27:24:0:-1|7;0|9:-1|6;0|9:PASS +chr1 1020057 Human_STR_311 CCCGCCCCCCCCCGCCCGCCCGCCCGC CCCGCCCCCCCGCCCGCCCGCCCGC,CCCGCCCCCCCCGCCCGCCCGCCCGC,CCCGCCCGCCCCCGCCCGCCCGCCCGC . CALLRATE0.75 INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.76;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;BPDIFFS=-2,-1,0;START=1020057;END=1020083;PERIOD=4;AN=18;REFAC=1;AC=9,16,0;NSKIP=0;NFILT=170;DP=350;DSNP=0;DSTUTTER=26;DFLANKINDEL=46;HET=0.512346;HWEP=0.180887;HRUN=9 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:-1|-1:1:1:44:0:4:5:22.00|22.00:0|0:4.76:0:.:0:-4|1;-1|26;0|4:-1|23:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|2:-2|-1:1:0.5:52:0:2:7:20.98|31.02:0|0:99.1:-1.15:31:-0.58:-2|10;-1|20;0|1:-2|9;-1|15:PASS +chr1 1020105 Human_STR_312 CGTCCCGTCCTGTCCAGTCCCGTCCC . . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1020105;END=1020130;PERIOD=5;AN=354;REFAC=354;AC=0;NSKIP=2;NFILT=0;DP=6156;DSNP=0;DSTUTTER=0;DFLANKINDEL=164;HET=0;HWEP=1;HRUN=3 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|18:0|18:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|21:0|21:PASS 0|0:0|0:1:1:28:0:0:2:14.00|14.00:0|0:.:0:.:0:0|18:0|17:PASS 0|0:0|0:1:1:34:0:0:3:17.00|17.00:0|0:.:0:.:0:0|20:0|17:PASS 0|0:0|0:1:1:43:0:0:2:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS 0|0:0|0:1:1:50:0:0:2:25.00|25.00:0|0:.:0:.:0:0|29:0|27:PASS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|29:0|29:PASS 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|31:0|30:PASS 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|17:0|17:PASS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|23:0|23:PASS 0|0:0|0:1:1:50:0:0:3:25.00|25.00:0|0:.:0:.:0:0|28:0|27:PASS +chr1 1020562 Human_STR_313 CGCCGCCGCCGTCCTCCGCCCGCCGCCGCC . . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1020562;END=1020591;PERIOD=3;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=9588;DSNP=0;DSTUTTER=0;DFLANKINDEL=72;HET=0;HWEP=1;HRUN=3 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|30:PASS 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|19:0|19:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|30:PASS 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|34:0|32:PASS 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|34:PASS 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|26:0|26:PASS 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|42:0|42:PASS 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|25:0|25:PASS 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|27:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS +chr1 1022709 Human_STR_314 CCTCCTGCCTCCTCCCCTCCTCC . . PASS INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1022709;END=1022731;PERIOD=3;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=9555;DSNP=0;DSTUTTER=1;DFLANKINDEL=19;HET=0;HWEP=1;HRUN=4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|38:PASS 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|31:PASS 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|30:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|36:PASS 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|40:0|38:PASS 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|38:PASS 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|52:0|49:PASS 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|32:PASS +chr1 1027235 Human_STR_315 TGTGTTTGTGTGTGTGTGT . . PASS INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1027235;END=1027253;PERIOD=2;AN=358;REFAC=358;AC=0;NSKIP=0;NFILT=0;DP=9659;DSNP=0;DSTUTTER=11;DFLANKINDEL=18;HET=0;HWEP=1;HRUN=3 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:26.54|30.46:0|0:.:0:.:0:0|39:0|38:PASS 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|45:PASS 0|0:0|0:1:1:50:0:0:0:27.00|23.00:0|0:.:0:.:0:0|34:0|31:PASS 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|27:PASS 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:-2|1;0|36:-2|1;0|32:PASS 0|0:0|0:1:1:52:0:0:0:23.00|29.00:0|0:.:0:.:0:0|38:0|37:PASS 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|40:PASS 0|0:0|0:1:1:60:0:0:0:32.00|28.00:0|0:.:0:.:0:0|37:0|37:PASS 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|35:PASS 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:-44|1;0|60:0|57:PASS 0|0:0|0:1:1:52:0:0:0:21.75|30.25:0|0:.:0:.:0:0|40:0|40:PASS +chr1 1028321 Human_STR_316 CCCCCCCCCCCCCCCCGCCCT CACCCCCCCCCCCGCCCC,CACCCCCCCCCCCCGCCCC,CACCCCCCCCCCCGGCCCC,CCCCCCCCCCCCCCGCCCT,CACCCCCCCCCCCCCGCCCC,CCCCCCCCCCCCCCCGCCCT,CACCCCCCCCCCCCCCGCCCC,CACCCCCCCCCCCCCCCGCCCC . CALLRATE0.75 INFRAME_PGEOM=0.54;INFRAME_UP=0.05;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-3,-2,-2,-2,-1,-1,0,1;START=1028321;END=1028336;PERIOD=1;AN=174;REFAC=0;AC=6,219,1,0,22,6,6,0;NSKIP=0;NFILT=92;DP=2729;DSNP=0;DSTUTTER=144;DFLANKINDEL=267;HET=0.286894;HWEP=0.477811;HRUN=16 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:-2|-2:0.87:0.87:24:0:2:3:12.00|12.00:0|0:0.94:0:.:0:-2|14;0|2;1|2:-2|12;4|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|5:-2|-1:1:0.5:27:0:0:3:12.64|14.36:0|0:15.08:-0.08:22:0:-2|10;-1|11;0|2;4|1;42|1:-2|10;-1|11:PASS 2|2:-2|-2:1:1:33:0:2:4:16.50|16.50:0|0:3.08:0:.:0:-2|16;0|4;1|1:-2|15:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:-2|-2:1:1:26:0:0:0:13.00|13.00:0|0:5.38:0:.:0:-3|1;-2|17:-2|18:PASS 2|2:-2|-2:0.9:0.9:44:0:4:5:22.00|22.00:0|0:1:0:.:0:-11|1;-2|26;-1|1;0|4;1|2:-2|26;-1|1;4|1:PASS 2|2:-2|-2:1:1:49:0:1:7:24.50|24.50:0|0:8.04:0:.:0:-2|35;-1|1;0|5;2|1:-2|33:PASS +chr1 1029591 Human_STR_317 GTGTGTGTGTGTGCAGT GTGTGTGTGTGTGCAGC,GTGTGTGTGTGTGTGTGTGCAGT . PASS INFRAME_PGEOM=0.84;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,6;START=1029591;END=1029603;PERIOD=2;AN=324;REFAC=323;AC=0,1;NSKIP=0;NFILT=17;DP=3031;DSNP=0;DSTUTTER=16;DFLANKINDEL=164;HET=0.00615379;HWEP=1;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:18:0:0:2:10.38|7.62:0|0:10.33:0:.:0:0|15:0|15:PASS 0|0:0|0:1:1:30:0:1:1:15.00|15.00:0|0:3.45:0:.:0:0|24;2|2:0|24;2|1:PASS 0|2:0|6:1:0.5:11:0:0:0:7.50|3.50:0|0:6.17:-0.54:8:0:-36|2;0|6:0|5;6|2:PASS 0|0:0|0:1:1:22:0:0:1:11.00|11.00:0|0:5.36:0:.:0:-40|1;0|18:0|17:PASS 0|0:0|0:1:1:21:0:0:2:10.50|10.50:0|0:4.49:0:.:0:-42|1;0|15:0|13:PASS 0|0:0|0:1:1:20:0:0:3:10.50|9.50:0|0:19.2:0:.:0:0|17:0|16:PASS 0|0:0|0:1:1:25:0:0:1:12.50|12.50:0|0:6.83:0:.:0:0|23:0|23:PASS 0|0:0|0:1:1:15:0:1:0:8.68|6.32:0|0:8.45:0:.:0:-2|1;0|12:-2|1;0|12:PASS 0|0:0|0:1:1:14:0:0:0:7.00|7.00:0|0:3.32:0:.:0:0|13:0|13:PASS 0|0:0|0:0.98:0.98:8:0:0:0:4.00|4.00:0|0:2.11:0:.:0:0|8:0|8:PASS 0|0:0|0:1:1:21:0:0:3:10.27|10.73:0|0:15.48:0:.:0:0|18:0|16:PASS +chr1 1029628 Human_STR_318 CATGTGTGTGTGTGTGTGCAGT CATGTGTGTGTGCAGT,CGTGTGTGTGTGCAGC,CGTGTGTGTGTGTGCAGT,CGTGTGTGTGTGTGTGCAGT,CATGTGTGTGTGTGTGTGTGCAGT,CGTGTGTGTGTGTGTGTGTGCAGT,CGTGTGTGTGTGTGTGTGTGTGCAGT . CALLRATE0.75 INFRAME_PGEOM=0.46;INFRAME_UP=0.01;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.36;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;BPDIFFS=-6,-6,-4,-2,2,2,4;START=1029630;END=1029645;PERIOD=2;AN=178;REFAC=78;AC=7,3,3,1,0,130,4;NSKIP=3;NFILT=87;DP=1157;DSNP=0;DSTUTTER=43;DFLANKINDEL=96;HET=0.5671;HWEP=0.28467;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|6:0|2:0.97:0.48:7:0:2:0:5.41|1.59:0|0:1.8:-0.9:7:-0.37:-36|2;0|3;2|1:-6|2;0|3;2|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:19:0:0:1:9.50|9.50:0|0:4.62:0:.:0:-4|1;0|16:0|13:PASS 0|6:0|2:1:0.5:9:0:1:1:5.22|3.78:0|0:3.14:-0:7:0:0|4;2|2:0|2;2|2:PASS 6|6:2|2:0.84:0.84:6:0:0:0:3.00|3.00:0|0:1.42:0:.:0:-10|1;2|4:2|5:PASS 6|6:2|2:0.93:0.93:8:0:0:0:4.00|4.00:0|0:1.72:0:.:0:2|6:2|6:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1029670 Human_STR_319 CATGTGTGTGTGTGTGTG CATGTGTGTGTG,CATGTGTGTGTGTG,CGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.88;INFRAME_UP=0.03;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-6,-4,-4;START=1029672;END=1029687;PERIOD=2;AN=194;REFAC=22;AC=241,0,15;NSKIP=1;NFILT=81;DP=742;DSNP=0;DSTUTTER=8;DFLANKINDEL=35;HET=0.294558;HWEP=0.37274;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|1:-6|-6:0.6:0.6:3:0:0:0:1.50|1.50:0|0:0.65:0:.:0:-6|3:-6|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|1:-6|-6:0.53:0.53:3:0:0:0:1.50|1.50:0|0:0.47:0:.:0:-6|2:-6|2:PASS 1|1:-6|-6:0.95:0.95:8:0:0:0:4.00|4.00:0|0:1.69:0:.:0:-18|1;-6|5:-6|4:PASS 1|1:-6|-6:0.47:0.47:7:0:0:0:3.50|3.50:0|0:0.3:0:.:0:-6|1:-6|1:PASS 1|1:-6|-6:0.93:0.93:7:0:0:0:3.50|3.50:0|0:1.63:0:.:0:-6|6:-6|4:PASS +chr1 1029820 Human_STR_320 TCAGCGTGTGTGTGTGTGCAGT TCTGCGTGTGTGTGTGTGCAGT,TGAGCGTGTGTGTGTGTGCAGT,TCAGCATGTGTGTGTGTGTGCAGC,TCAGCGTGTGTGTGTGTGTGCAGT . CALLRATE0.75 INFRAME_PGEOM=0.71;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0,0,2,2;START=1029825;END=1029837;PERIOD=2;AN=130;REFAC=121;AC=7,1,0,4;NSKIP=0;NFILT=107;DP=614;DSNP=0;DSTUTTER=6;DFLANKINDEL=38;HET=0.0450888;HWEP=0.371936;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:19:0:0:1:9.50|9.50:0|0:4.37:0:.:0:0|18:0|16:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.27:0.27:1:0:0:0:0.50|0.50:0|0:0.17:0:.:0:0|1:0|1:PASS 0|0:0|0:0.86:0.86:15:0:1:2:7.50|7.50:0|0:0.78:0:.:0:0|12;6|1:0|9;6|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:14:0:0:1:7.00|7.00:0|0:2.9:0:.:0:0|12:0|10:PASS +chr1 1029897 Human_STR_321 GTGTGTGTGTGTGTG GCGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.78;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.58;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;BPDIFFS=0;START=1029897;END=1029911;PERIOD=2;AN=164;REFAC=27;AC=205;NSKIP=0;NFILT=91;DP=354;DSNP=0;DSTUTTER=8;DFLANKINDEL=12;HET=0.275059;HWEP=3.25802e-05;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|1:0|0:0.65:0.65:3:0:0:0:1.50|1.50:0|0:0.28:0:.:0:0|1:0|1:PASS 0|1:0|0:1:0.5:4:0:0:0:2.46|1.54:0|0:2.56:0:3:0:0|3:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 1|1:0|0:0.99:0.99:10:0:0:0:5.00|5.00:0|0:1.98:0:.:0:0|6:0|5:PASS 1|1:0|0:0.89:0.89:4:0:0:0:2.00|2.00:0|0:0.9:0:.:0:0|4:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1029938 Human_STR_322 CATGTGTGTGTGTGTG CTTGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.71;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0;START=1029940;END=1029953;PERIOD=2;AN=222;REFAC=198;AC=36;NSKIP=1;NFILT=65;DP=487;DSNP=0;DSTUTTER=8;DFLANKINDEL=6;HET=0;HWEP=1;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|1:0|0:0.65:0.32:4:0:0:0:2.89|1.11:0|0:0.27:-0.2:4:0:0|4:0|2:PASS 0|0:0|0:0.64:0.64:2:0:0:0:1.00|1.00:0|0:0.24:0:.:0:0|1:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.93:0.93:6:0:0:0:3.00|3.00:0|0:1.11:0:.:0:0|5:0|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.79:0.79:4:0:0:0:2.00|2.00:0|0:0.58:0:.:0:0|3:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.32:0.32:3:0:0:0:1.50|1.50:0|0:-0.06:0:.:0:0|1:.:PASS +chr1 1029980 Human_STR_323 CATGTGTGTGTGTGTGTG CATGTGTGTGTG,CATGTGTGTGTGTGTGTGTG,CTTGTGTGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.59;INFRAME_UP=0;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-6,2,2;START=1029982;END=1029997;PERIOD=2;AN=82;REFAC=20;AC=3,79,10;NSKIP=1;NFILT=135;DP=190;DSNP=0;DSTUTTER=2;DFLANKINDEL=5;HET=0.404521;HWEP=0.0385822;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:2|2:0.41:0.41:3:0:0:0:1.50|1.50:0|0:0.26:0:.:0:-34|1:2|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1030059 Human_STR_324 GCATGTGTGTGTGTGTG GGATGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=0;START=1030062;END=1030075;PERIOD=2;AN=212;REFAC=212;AC=0;NSKIP=0;NFILT=70;DP=715;DSNP=0;DSTUTTER=11;DFLANKINDEL=25;HET=0;HWEP=1;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.93:0.93:6:0:0:0:3.00|3.00:0|0:1.13:0:.:0:0|6:0|5:PASS 0|0:0|0:0.83:0.83:4:0:1:0:2.00|2.00:0|0:0.68:0:.:0:-4|1;0|1:0|1:PASS 0|0:0|0:1:1:14:0:0:1:7.00|7.00:0|0:3.31:0:.:0:0|14:0|12:PASS 0|0:0|0:1:1:11:0:0:0:5.50|5.50:0|0:2.32:0:.:0:0|9:0|9:PASS 0|0:0|0:0.98:0.98:8:0:0:0:4.00|4.00:0|0:1.81:0:.:0:0|8:0|8:PASS 0|0:0|0:0.85:0.85:5:0:0:0:2.50|2.50:0|0:0.74:0:.:0:0|4:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:15:0:0:1:7.50|7.50:0|0:3.22:0:.:0:0|14:0|14:PASS +chr1 1030100 Human_STR_325 CATGTGTGTGTGTGTGTG CGTGTGTGTGTGTG,CGTGTGTGTGTGTGTG . HWE1e-06 INFRAME_PGEOM=0.62;INFRAME_UP=0.01;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-4,-2;START=1030102;END=1030117;PERIOD=2;AN=294;REFAC=161;AC=1,198;NSKIP=0;NFILT=24;DP=783;DSNP=0;DSTUTTER=50;DFLANKINDEL=11;HET=0.498519;HWEP=1.12794e-08;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:0.76:0.76:5:0:1:0:2.50|2.50:0|0:0.79:0:.:0:-12|1;0|2:0|2:PASS 2|2:-2|-2:0.75:0.75:5:0:0:0:2.50|2.50:0|0:0.69:0:.:0:-3|1;-2|3:-2|4:PASS 0|2:0|-2:1:0.5:8:0:1:0:3.54|4.46:0|0:5.35:-0:7:0:-2|5;0|2:-2|2;0|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:-2|-2:0.41:0.41:2:0:0:0:1.00|1.00:0|0:0.11:0:.:0:-7|1:-2|1:PASS 0|2:0|-2:0.99:0.5:13:0:1:0:9.12|3.88:0|0:2.3:-0.84:12:-0.6:-2|2;0|6:-2|1;0|5:PASS 0|0:0|0:0.96:0.96:9:0:0:0:4.50|4.50:0|0:1.64:0:.:0:0|5:0|3:PASS 0|0:0|0:0.64:0.64:4:0:0:0:2.00|2.00:0|0:0.54:0:.:0:0|3:0|3:PASS 2|2:-2|-2:0.52:0.52:3:0:0:0:1.50|1.50:0|0:0.33:0:.:0:-2|3:-2|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|2:0|-2:0.46:0.23:7:0:1:0:5.90|1.10:0|0:0.05:-0.9:7:0:0|5:0|5:PASS +chr1 1030138 Human_STR_326 TCAGCATGTGTGTGTGTGTGTGTG TCAGCATGTGTGTGTG,TCAGCGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TCAGCGTGTGTGTGTGTGTG,TCAGCGTGTGTGTGTGTGTGTGTGTG,TCAGCATGTGTGTGTGTGTGTGTGTGTG,TCAGCATGTGTGTGTGTGTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.7;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-8,-8,-5,-4,2,4,6;START=1030144;END=1030161;PERIOD=2;AN=236;REFAC=12;AC=103,19,0,10,76,52,72;NSKIP=1;NFILT=53;DP=493;DSNP=0;DSTUTTER=24;DFLANKINDEL=7;HET=0.765297;HWEP=1.00677e-06;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 6|6:4|4:0.29:0.29:3:0:0:0:1.50|1.50:0|0:0.36:0:.:0:-32|2:4|2:PASS 1|5:-8|2:0.99:0.49:4:0:0:0:2.00|2.00:0|0:1.88:0:4:-0:2|2:.:PASS 6|1:4|-8:0.61:0.31:3:0:1:0:2.00|1.00:0|0:0.46:0:3:0:-38|1;-13|1:2|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 5|5:2|2:0.27:0.27:2:0:1:0:1.00|1.00:0|0:0.37:0:.:0:0|1:0|1;2|1:PASS 6|5:4|2:0.3:0.15:7:0:0:1:5.48|1.52:0|0:0:-0.66:6:0:-32|1;-13|1;-8|1;-2|1;4|1:4|2:PASS 7|7:6|6:0.12:0.12:3:0:0:0:1.50|1.50:0|0:-0.04:0:.:0:-13|1;3|1:.:PASS 7|7:6|6:0.11:0.11:2:0:0:0:1.00|1.00:0|0:-0.07:0:.:0:-13|1:.:PASS 2|5:-8|2:0.47:0.23:3:0:0:0:1.50|1.50:0|0:0:0:2:0:-3|1;0|1:.:PASS 1|5:-8|2:1:0.5:4:0:0:0:1.01|2.99:0|0:2.88:-0.2:4:0:-6|1:2|1:PASS 1|7:-8|6:0.99:0.5:6:0:0:0:1.34|4.66:0|0:2.36:-0.66:6:0:-30|2;6|1:.:PASS +chr1 1030261 Human_STR_327 GTGTGTGTGTGTG . . CALLRATE0.75 INFRAME_PGEOM=0.74;INFRAME_UP=0.01;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.81;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=1030261;END=1030273;PERIOD=2;AN=114;REFAC=114;AC=0;NSKIP=0;NFILT=104;DP=131;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;HET=0;HWEP=1;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:3:0:0:0:1.50|1.50:0|0:.:0:.:0:0|3:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:2:0:0:0:1.00|1.00:0|0:.:0:.:0:0|2:0|2:PASS 0|0:0|0:1:1:1:0:0:0:0.50|0.50:0|0:.:0:.:0:0|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:1:0:0:0:0.50|0.50:0|0:.:0:.:0:.:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:1:0:0:0:0.50|0.50:0|0:.:0:.:0:.:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:1:1:3:0:0:0:1.50|1.50:0|0:.:0:.:0:0|1:0|1:PASS +chr1 1030297 Human_STR_328 CAGCATGTGTGTGTGTG CAGCGTGTGTGTGTG,CAGCTTGTGTGTGTGTG,CTGCTTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.91;INFRAME_UP=0.01;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.74;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;BPDIFFS=-2,0,0;START=1030302;END=1030313;PERIOD=2;AN=146;REFAC=100;AC=10,49,9;NSKIP=3;NFILT=87;DP=186;DSNP=0;DSTUTTER=6;DFLANKINDEL=5;HET=0.0912929;HWEP=0.157112;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|2:0|0:0.81:0.41:4:0:0:0:2.04|1.96:0|0:0.82:0:2:0:0|3:0|1:PASS 0|0:0|0:0.1:0.1:1:0:0:0:0.50|0.50:0|0:0:0:.:0:.:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.4:0.4:1:0:0:0:0.50|0.50:0|0:0.3:0:.:0:0|1:0|1:PASS 0|0:0|0:0.4:0.4:1:0:0:0:0.50|0.50:0|0:0.3:0:.:0:0|1:0|1:PASS 2|2:0|0:0.38:0.38:1:0:0:0:0.50|0.50:0|0:0.29:0:.:0:0|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.4:0.4:1:0:0:0:0.50|0.50:0|0:0.3:0:.:0:0|1:0|1:PASS +chr1 1030376 Human_STR_329 CATGTGTGTGTGTGTGTG CGTGTGTGTGTG,CATGTGTGTGTGTG,CGTGTGTGTGTGTG,CGTGTGTGTGTGTGTG . CALLRATE0.75;HWE1e-06 INFRAME_PGEOM=0.83;INFRAME_UP=0.09;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-6,-4,-4,-2;START=1030378;END=1030393;PERIOD=2;AN=110;REFAC=48;AC=12,6,3,72;NSKIP=1;NFILT=96;DP=93;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;HET=0.610909;HWEP=1.00337e-15;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 4|4:-2|-2:0.27:0.27:2:0:1:0:1.00|1.00:0|0:-0.17:0:.:0:-2|1;2|1:-2|1;2|1:PASS 4|4:-2|-2:0.1:0.1:2:0:0:0:1.00|1.00:0|0:-0.08:0:.:0:8|1:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.43:0.43:2:0:0:0:1.00|1.00:0|0:0.47:0:.:0:0|2:0|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 4|4:-2|-2:0.25:0.25:1:0:0:0:0.50|0.50:0|0:0.14:0:.:0:-2|1:-2|1:PASS 0|0:0|0:0.05:0.05:1:0:0:0:0.50|0.50:0|0:-0.12:0:.:0:-44|1:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1030419 Human_STR_330 GTGTGTGTGTGTG GTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.78;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-2;START=1030419;END=1030431;PERIOD=2;AN=168;REFAC=166;AC=3;NSKIP=2;NFILT=65;DP=152;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;HET=0.0235261;HWEP=0.271774;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:0.33:0.33:1:0:0:0:0.50|0.50:0|0:0:0:.:0:.:.:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.88:0.88:5:0:0:0:2.50|2.50:0|0:0.88:0:.:0:0|4:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.88:0.88:7:0:0:1:3.50|3.50:0|0:0.89:0:.:0:-4|1;0|3:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.65:0.65:1:0:0:0:0.50|0.50:0|0:0.29:0:.:0:0|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1030458 Human_STR_331 CATGTGTGTGTGTG CGTGTGTGTG,CATGTGTGTGTG,CGTGTGTGTGTG,CTTGTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;BPDIFFS=-4,-2,-2,0;START=1030460;END=1030471;PERIOD=2;AN=106;REFAC=89;AC=0,0,6,19;NSKIP=1;NFILT=97;DP=129;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;HET=0.0726237;HWEP=0.435172;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.33:0.33:6:0:0:0:3.00|3.00:0|0:0.28:0:.:0:0|3:0|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.28:0.28:1:0:0:0:0.50|0.50:0|0:0.21:0:.:0:0|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1030605 Human_STR_332 GTGTGTGTGTGTG GTGTGTGTGTG . CALLRATE0.75 INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;BPDIFFS=-2;START=1030605;END=1030617;PERIOD=2;AN=82;REFAC=75;AC=10;NSKIP=0;NFILT=70;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;HET=0.156157;HWEP=0.0158342;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.66:0.66:1:0:0:0:0.50|0.50:0|0:0.29:0:.:0:-2|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.88:0.88:3:0:0:0:1.50|1.50:0|0:0.88:0:.:0:0|3:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 0|0:0|0:0.66:0.66:1:0:0:0:0.50|0.50:0|0:0.29:0:.:0:0|1:0|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL +chr1 1030683 Human_STR_334 GTGTGTGTGTGTGCAGT GCGTGTGTGTGTGCAGA,GCGTGTGTGTGTGCAGC,GCGTGTGTGTGTGCAGT,GTGTGTGTGTGTGCTGT,GCGTGTGTGTGTGTGCAGT . CALLRATE0.75;HWE1e-06 INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;BPDIFFS=0,0,0,0,2;START=1030683;END=1030695;PERIOD=2;AN=124;REFAC=23;AC=22,106,6,4,12;NSKIP=0;NFILT=55;DP=111;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;HET=0.425078;HWEP=1.73779e-12;HRUN=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|2:0|0:0.29:0.29:1:0:0:0:0.50|0.50:0|0:0.3:0:.:0:.:.:PASS 1|2:0|0:0.96:0.48:3:0:0:0:1.00|2.00:0|0:1.57:0:3:0:0|2:0|2:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 3|3:0|0:0.24:0.24:1:0:0:0:0.50|0.50:0|0:0.28:0:.:0:0|1:0|1:PASS 2|2:0|0:0.29:0.29:1:0:0:0:0.50|0.50:0|0:0.3:0:.:0:.:.:PASS 0|0:0|0:0.61:0.61:4:0:0:0:2.00|2.00:0|0:0.86:0:.:0:0|4:0|3:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL 2|2:0|0:0.28:0.28:1:0:1:0:0.50|0.50:0|0:0.29:0:.:0:2|1:2|1:PASS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:NOCALL diff --git a/poetry.lock 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= {version = ">=3.0.0", python = "<3.8"} -cyvcf2 = ">=0.30.4" +cyvcf2 = ">=0.30.27" matplotlib = ">=3.1.2" numpy = ">=1.17.3" pandas = ">=1.2.0" @@ -42,6 +42,7 @@ scikit-learn = ">=0.23.1" scipy = ">=1.3.3" statsmodels = ">=0.10.2" pyfaidx = ">=0.5.6" +pgenlib = ">=0.90.1" [tool.poetry.group.tests.dependencies] pytest = ">=6.2.0" @@ -63,6 +64,7 @@ qcSTR = "trtools.qcSTR:run" associaTR = "trtools.associaTR:run" prancSTR = "trtools.prancSTR:run" simTR = "trtools.simTR:run" +annotaTR = "trtools.annotaTR:run" [tool.pytest.ini_options] addopts = """ diff --git a/test/cmdline_tests.sh b/test/cmdline_tests.sh index 317d9c4a..3679b9ab 100755 --- a/test/cmdline_tests.sh +++ b/test/cmdline_tests.sh @@ -41,14 +41,29 @@ TMPDIR=$(mktemp -d -t tmp-XXXXXXXXXX) echo "Saving tmp files in ${TMPDIR}" # Check version -for tool in mergeSTR dumpSTR qcSTR statSTR compareSTR associaTR prancSTR simTR +for tool in mergeSTR dumpSTR qcSTR statSTR compareSTR associaTR prancSTR simTR annotaTR do runcmd_pass "${tool} --version" done runcmd_pass "python -c 'import trtools; print(trtools.__version__)'" -# Check for valid/invalid output locations +# AnnotaTR tests +runcmd_pass "annotaTR --vcf ${EXDATADIR}/trio_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR}/test --dosages bestguess" +runcmd_pass "annotaTR --vcf ${EXDATADIR}/trio_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR}/test --dosages bestguess_norm" +runcmd_pass "annotaTR --vcf ${EXDATADIR}/trio_chr21_hipstr.sorted.vcf.gz --vcftype hipstr --dosages bestguess_norm --out ${TMPDIR}/test --outtype pgen" +runcmd_pass "annotaTR --vcf ${BEAGLEDIR}/1kg_snpstr_21_first_100k_second_50_STRs_imputed.vcf.gz --vcftype hipstr --ref-panel ${BEAGLEDIR}/1kg_snpstr_21_first_100k_first_50_annotated.vcf.gz --outtype vcf pgen --dosages bestguess_norm --out ${TMPDIR}/test" +runcmd_pass "annotaTR --vcf ${BEAGLEDIR}/beagle_imputed_withap.vcf.gz --vcftype hipstr --ref-panel ${BEAGLEDIR}/beagle_refpanel.vcf.gz --match-refpanel-on trimmedalleles --dosages beagleap --out ${TMPDIR}/test" +runcmd_fail "annotaTR --vcf ${EXDATADIR}/trio_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR}/test" +runcmd_fail "annotaTR --vcf ${EXDATADIR}/trio_chr21_gangstr.sorted.vcf.gz --dosages beagleap --outtype pgen --out ${TMPDIR}/test" +runcmd_fail "annotaTR --vcf ${EXDATADIR}/trio_chr21_gangstr.sorted.vcf.gz --dosages beagleap_norm --outtype pgen --out ${TMPDIR}/test" + +# If file has SNPs+TRs but no refpanel, annotatr should fail +runcmd_fail "annotaTR --vcf ${BEAGLEDIR}/beagle_imputed_withap.vcf.gz --vcftype hipstr --dosages beagleap --out ${TMPDIR}/test" + +# If VCF not bgzipped/index annotatr should fail +runcmd_fail "annotaTR --vcf ${EXDATADIR}/CEU_subset_unzipped.vcf --vcftype hipstr --dosages bestguess --out ${TMPDIR}/test" +runcmd_fail "annotaTR --vcf ${EXDATADIR}/CEU_subset_unindexed.vcf.gz --vcftype hipstr --dosages bestguess --out ${TMPDIR}/test" # Example command running prancSTR for only one chromosome with hipstr output file # --only-passing skips VCF records with non-passing filters @@ -64,6 +79,7 @@ else runcmd_pass "simTR --coords chr11_CBL:5001-5033 --ref ${EXDATADIR}/CBL.fa --outprefix ${TMPDIR}/test-simtr --tmpdir ${TMPDIR}/test-simtr --repeat-unit CGG --art art_illumina --coverage 1000 --read-length 150 --seed 12345 --u 0.02 --d 0.02 --rho 0.9" fi +# Check for valid/invalid output locations runcmd_pass "statSTR --vcf ${EXDATADIR}/NA12878_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR}/test --mean" runcmd_fail "statSTR --vcf ${EXDATADIR}/NA12878_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR}/kittens/xxx --mean" runcmd_pass "statSTR --vcf ${EXDATADIR}/NA12878_chr21_gangstr.sorted.vcf.gz --out ${TMPDIR} --mean" diff --git a/trtools/annotaTR/README.rst b/trtools/annotaTR/README.rst new file mode 100644 index 00000000..716978bf --- /dev/null +++ b/trtools/annotaTR/README.rst @@ -0,0 +1,141 @@ +.. overview_directive +.. |annotaTR overview| replace:: AnnotaTR takes in a TR genotype VCF file and outputs a new file (VCF or PGEN) with additional INFO/FORMAT fields +.. overview_directive_done + + +annotaTR +======== + +|annotaTR overview| + +Current use cases include: + +* Annotating a TR VCF file with Beagle-imputed genotypes to add back TR metadata from a reference panel +* Computing dosages for each genotype, which can be used for downstream association testing. + +AnnotaTR can be used to do one or both of these tasks in a single command. + +Usage +----- +The following is a basic annotaTR command:: + + annotaTR \ + --vcf \ + --out \ + [annotation options] + +Required parameters: + +* :code:`--vcf `: VCF file with TR genotypes that has been generated by a supported genotyping tool (or imputed from one using Beagle). The VCF file must be bgzipped and indexed. +* :code:`--out `: prefix to name output files. + +Other general parameters: + +* :code:`--vcftype `: Which genotyping tool generated the input VCF. Default = :code:`auto`. Necessary if it cannot be automatically inferred. One of: :code:`gangstr`, :code:`advntr`, :code:`hipstr`, :code:`eh`, :code:`popstr`. +* :code:`--outtype `: Which output format to generate. Supported output types are :code:`vcf` or :code:`pgen`. If multiple types are listed (e.g. :code:`--outtype vcf pgen`), all specified output formats are generated. By default, only VCF output is generated at :code:`$outprefix.vcf`. If PGEN output is specified, the files :code:`$outprefix.pgen`, :code:`$outprefix.pvar`, and :code:`$outprefix.psam` are generated. See more on the `pgen format here `_ +* :code:`--chunk-size `: If writing PGEN output, load dosages in chunks of this many variants at a type. This can avoid out of memory errors if you are processing very large VCF files. + +In addition to specifying input and output options above, you must specify at least one annotation operation to perform. These are described below. + +Annotation options +------------------ + +annotaTR offers several annotation options: + +Computing dosages +^^^^^^^^^^^^^^^^^ + +Dosages are quantitative representations of individual-level genotypes. A major use case for dosages is to perform association testing between TR genotypes and a phenotype of interest. Major advantages of using dosages are: + +* They can be used as input to downstream tools that support association testing with dosage values, even if those tools do not explicitly support TRs or multi-allelic sites. This has currently been tested using PGEN files output by associaTR as input to plink. +* This enables testing TRs alongside other variant types using the same pipelines, streamlining workflows that include multiple variant types. + +The following command computes dosages:: + + annotaTR \ + --vcf \ + --out \ + --dosages + +where the argument to the :code:`--dosages` option specifies the method to compute dosages. It must be one of: + +* :code:`bestguess`: dosages are computed by summing the length of alleles (given in number of repeat units) for each call. e.g. for a genotype heterozygous for 3 and 4 copies of a repeat, the best guess dosage will be 7. +* :code:`bestguess_norm`: same as above, but scaled to be between 0 and 2. This is required if generating pgen output, since pgen only supports dosage values in this range. +* :code:`beagpleap`: dosages for imputed calls are computed in a way that takes into account imputation uncertainty. This option requires the Beagle VCF FORMAT fields :code:`AP1` and :code:`AP2` to be present, which give the probability of each alternate allele on each of the two haplotypes of an individual. AP-based dosages are generated by computing a weighted sum of allele lengths for each haplotype and added together to get the total dosage for the genotype (:math:`\sum_{hap=1,2} \sum_{allele a} P(a_{hap})len(a)`). In the case of imputation with no uncertainty (all AP fields are either 0 or 1), dosages computed in this way should match best guess dosages. +* :code:`beagleap_norm`: same as above, but scaled to be between 0 and 2. + +If annotating dosages, the following fields are added to VCF output files: + +* FORMAT field :code:`TRDS`. This is a float value giving the estimated TR dosage for each call. +* INFO field :code:`DSLEN`. This records the minimum and maximum allele lengths, which can be useful to know if computing normalized dosages but you later want to recover the unnormalized dosage values. + +Dosages may also be output to PGEN format. Because dosages are not explicitly supported for multi-allelic sites, we output an accompanying dummy pvar file in which: + +* All TR variants are listed with reference alleles of "A" and alternate alleles of "T". These are just placeholders since those fields are required. +* We include the DSLEN field described above under VCF format. + +Annotating imputed TR VCFs +^^^^^^^^^^^^^^^^^^^^^^^^^^ + +Note this functionality replaces the script :code:`trtools_prep_beagle_vcf.sh`. + +When TRs cannot be directly genotyped from sequencing data, an alternative is to impute them using `Beagle `_ with a phased reference panel of SNPs+TRs (e.g. see our latest `reference panel from EnsembleTR `_). + +Using Beagle to impute TRs will output a VCF with both SNPs+TRs, and strips the TR-specific fields required by TRTools (see the `callers page `_ for more details). annotaTR can be used to add back these fields:: + + annotaTR \ + --vcf \ + --out \ + --ref-panel \ + [--outtype ] + +where: + +* :code:`--vcf` gives the imputed VCF file, which can be the file directly output by Beagle. +* :code:`--ref-panel` gives the VCF file of the reference panel used for imputation with Beagle. + +Additional relevant options: + +* :code:`--match-refpanel-on `: indicates how to match loci between the reference panel and the target VCF. Options: locid, rawalleles, trimmedalleles (Default:locid) + * **locid** matches on the ID in the VCF file. If your reference panel does not have informative IDs for TRs (e.g. all are set to "."), this option will not work and annotaTR will output an error + * **rawalleles** means loci are matched on :code:`chrom:pos:ref:alt` + * **trimmedalleles** means loci are matched on :code:`chrom:pos:ref:alt` but ref and alt alleles are trimmed to remove common prefixes/suffixes. The trimmedalleles option must be used if you merged samples in your target VCF file using :code:`bcftools merge`, since that tool will modify alleles to remove common sequence (see `this issue `_) +* :code:`--ignore-duplicates`: This flag outputs a warning if duplicate loci are detected in the reference. If this flag is not set and a duplicate locus is detected, the program quits. + +If generating a VCF output file, this command will output a new file containing only STRs, with the following fields added back depending on the genotyper used to generate the reference panel: + +* For HipSTR-based reference panels: INFO fields START, END, PERIOD are added +* For adVNTR: INFO fields RU, VID are added +* For GangSTR: INFO field RU is added +* For ExpansionHunter: INFO fields RU, VARID, RL are added + +If generating PGEN output, these fields will not be explicitly output but will be added during processing of the input VCF to enable computing dosages to output to the PGEN file. In all cases only TRs (and not SNPs or other variants in the reference panel) are included in the final output file. + +Notes on output files +--------------------- + +* VCF output files are supported for all operations (currently: annotation of Beagle output and computing dosages) +* PGEN output is only supported when computing normalized dosages. + + +Example commands +---------------- + +Below are :code:`annotaTR` examples using data files that can be found at https://github.com/gymrek-lab/TRTools/tree/master/example-files and https://github.com/gymrek-lab/TRTools/tree/master/trtools/testsupport:: + + # Add normalized dosages to a TR-containing VCF file output by GangSTR + annotaTR --vcf trio_chr21_gangstr.sorted.vcf.gz --out test_gangstr_dosage --dosages bestguess + + # Add non-normalized dosages to a TR-containing VCF file output by GangSTR + annotaTR --vcf trio_chr21_gangstr.sorted.vcf.gz --out test_gangstr_dosage_norm --dosages bestguess_norm + + # Add normalized dosages to a TR-containing VCF file output by HipSTR and output to PGEN + annotaTR --vcf trio_chr21_hipstr.sorted.vcf.gz --vcftype hipstr --dosages bestguess_norm --out test_hipstr_dosage --outtype pgen + + # Add normalized dosages and annotate a VCF file with TR genotypes (and SNPs) imputed by + # Beagle and output to both VCF and PGEN + annotaTR --vcf 1kg_snpstr_21_first_100k_second_50_STRs_imputed.vcf.gz --vcftype hipstr --ref-panel 1kg_snpstr_21_first_100k_first_50_annotated.vcf.gz --outtype vcf pgen --dosages bestguess_norm --out test_beagle + + # Compute dosages based on Beagle AP field + # Require setting --match-refpanel-on since locus IDs are "." in this panel + annotaTR --vcf beagle_imputed_withap.vcf.gz --vcftype hipstr --ref-panel beagle_refpanel.vcf.gz --match-refpanel-on trimmedalleles --dosages beagleap --out test_beagleap \ No newline at end of file diff --git a/trtools/annotaTR/__init__.py b/trtools/annotaTR/__init__.py new file mode 100644 index 00000000..59007ddd --- /dev/null +++ b/trtools/annotaTR/__init__.py @@ -0,0 +1,4 @@ +# expose the code in the file annotaTR/annotaTR.py +# through the statement import trtools.annotaTR +# instead of through import trtools.annotaTR.annotaTR +from .annotaTR import * diff --git a/trtools/annotaTR/annotaTR.py b/trtools/annotaTR/annotaTR.py new file mode 100644 index 00000000..a47eac76 --- /dev/null +++ b/trtools/annotaTR/annotaTR.py @@ -0,0 +1,610 @@ +""" +Tool for annotating TR VCF files +""" + +import argparse +import cyvcf2 +import enum +import numpy as np +import os +from pgenlib import PgenWriter +import sys + +import trtools.utils.common as common +import trtools.utils.tr_harmonizer as trh +import trtools.utils.utils as utils +from trtools import __version__ + +# Variables for PGEN output +DEFAULT_PGEN_BATCHSIZE = 1000 +DUMMY_REF = "A" +DUMMY_ALT = "T" +DUMMY_QUAL = "." +DUMMY_FILTER = "." + +# Info fields copied from reference panel for each tool +INFOFIELDS = { + trh.VcfTypes.hipstr: ["START","END","PERIOD"], + trh.VcfTypes.advntr: ["RU", "VID"], + trh.VcfTypes.gangstr: ["RU"], + trh.VcfTypes.eh: ["RU","VARID","RL"] +} + +class OutputFileTypes(enum.Enum): + """Different supported output file types.""" + vcf = "vcf" + pgen = "pgen" + def __repr__(self): + return '<{}.{}>'.format(self.__class__.__name__, self.name) + +class RefMatchTypes(enum.Enum): + """Different supported output file types.""" + locid = "locid" + rawalleles = "rawalleles" + trimmedalleles = "trimmedalleles" + def __repr__(self): + return '<{}.{}>'.format(self.__class__.__name__, self.name) + +def UpdateVCFHeader(reader, command, vcftype, dosage_type=None, refreader=None): + """ + Update the VCF header of the reader to include: + - The annotatTR command used + - new INFO and FORMAT fields we will add if annotating dosages + (INFO/DSLEN and FORMAT/TRDS) + - new INFO fields we will add if using refpanel annotation. The fields added + depend on the vcftype and are listed in INFOFIELDS + + Note this function gets called even if we are not producing VCF output + since in some cases we still might need to add these fields to the record + during processing, and cyvcf2 will throw an error if the proper headers + are not there + + Parameters + ---------- + reader : cyvcf2.VCF + Reader for the input VCF file + command : str + The annotaTR command used + vcftype : trh.VcfTypes + Which type of TR VCF file the reader/refreader are + dosage_type : trh.TRDosageType + The type of dosages to be annotated. None if not computing dosages + refreader : cyvcf2.VCF + Reader for the reference panel + + Returns + ------- + success : bool + True if adding header fields was successful, otherwise False + + """ + reader.add_to_header("##command-AnnotaTR=" + command) + # Add dosage lines to header + if dosage_type is not None: + reader.add_format_to_header({ + 'ID': 'TRDS', + 'Description': 'TR genotype dosage, method={method}'.format(method=str(dosage_type)), + 'Type': 'Float', + 'Number': 1 + }) + reader.add_info_to_header({ + 'ID': 'DSLEN', + 'Description': 'Minimum and maximum dosages, used if normalization was applied', + 'Type': 'Float', + 'Number': '2' + }) + # Copy over relevant header lines from refpanel + if refreader is not None: + refheader = refreader.raw_header.split("\n") + for item in refheader: + if item.startswith("##source"): + reader.add_to_header("##preimputation_source" + item.strip()[8:]) + if item.startswith("##command"): + reader.add_to_header("##preimputation_command" + item.strip()[9:]) + if item.startswith("##contig") or item.startswith("##ALT"): + reader.add_to_header(item.strip()) + for infofield in INFOFIELDS[vcftype]: + if refreader.contains(infofield): + # Note can't pass headerinfo directly because extra + # quotes in Description need to be removed... + headerinfo = refreader.get_header_type(infofield) + # cyvcf2 might add a dummy header + if headerinfo["Description"].replace('"','') == "Dummy": + common.WARNING("Could not find required header field {field} in refpanel".format(field=infofield)) + return False + reader.add_info_to_header({ + 'ID': headerinfo["ID"], + 'Description': headerinfo["Description"].replace('"',''), + 'Type': headerinfo["Type"], + "Number": headerinfo["Number"] + }) + else: + common.WARNING("Could not find required header field {field} in refpanel".format(field=infofield)) + return False + return True + +def TrimAlleles(ref_allele, alt_alleles): + """ + Trim ref and alt alleles to remove common prefixes + and suffixes present in all alleles + + Parameters + ---------- + ref_allele : str + Reference allele + alt_allele : list of str + List of alternate alleles + + Returns + ------- + new_ref_allele : str + Trimmed reference allele + new_alt_allele : list of str + List of trimmed alternate alleles + """ + # First check for longest common suffix + alleles_left = [ref_allele] + alt_alleles + longest_common_suffix = os.path.commonprefix([item[::-1] for item in alleles_left])[::-1] + new_alt_alleles = alt_alleles.copy() + new_ref_allele = ref_allele + if len(longest_common_suffix) > 0: + new_ref_allele = new_ref_allele[:-1*len(longest_common_suffix)] + for i in range(len(new_alt_alleles)): + new_alt_alleles[i] = new_alt_alleles[i][:-1*len(longest_common_suffix)] + # Now remove longest common prefix + longest_common_prefix = os.path.commonprefix([new_ref_allele]+new_alt_alleles) + new_ref_allele = new_ref_allele[len(longest_common_prefix):] + for i in range(len(new_alt_alleles)): + new_alt_alleles[i] = new_alt_alleles[i][len(longest_common_prefix):] + # Replace empty string with "." + if new_ref_allele == "": new_ref_allele = "." + for i in range(len(new_alt_alleles)): + if new_alt_alleles[i] == "": + new_alt_alleles[i] = "." + return new_ref_allele, new_alt_alleles + +def GetLocusKey(record, match_on=RefMatchTypes.locid): + """ + Get the key used to match refpanel loci to the target VCF + + Options to match on: + + - RefMatchTypes.locid: use the ID from the VCF file + - RefMatchTypes.rawalleles: use chrom:pos:ref:alt where ref/alt are + exactly those in the reference VCF + - RefMatchTypes.trimmedalleles: use chrom:pos:ref:alt where ref/alt are + trimmed to discard extra sequence, as is done in bcftools merge :( + see: https://github.com/samtools/bcftools/issues/726 + + Parameters + ---------- + record : cyvcf2.Variant + Record to get the locus key for + match_on : RefMatchTypes + way to generate the key (Default: locid) + + Returns + ------- + locuskey : str + String of the key + """ + if match_on == RefMatchTypes.locid: + if record.ID is None or record.ID == ".": + raise ValueError("Error: {chrom}:{pos} cannot match on loci ID if ID=.".format( + chrom=record.CHROM, pos=record.POS)) + return record.ID + elif match_on == RefMatchTypes.rawalleles: + return "{chrom}:{pos}:{ref}:{alt}".format( + chrom=record.CHROM, + pos=record.POS, + ref=record.REF, + alt=",".join(record.ALT) + ) + elif match_on == RefMatchTypes.trimmedalleles: + ref, alt = TrimAlleles(record.REF, record.ALT) + return "{chrom}:{pos}:{ref}:{alt}".format( + chrom=record.CHROM, + pos=record.POS, + ref=ref, + alt=",".join(alt) + ) + else: + raise ValueError("Invalid match_refpanel_on=%s"%match_on) + +def LoadMetadataFromRefPanel(refreader, vcftype, match_on=RefMatchTypes.locid, + ignore_duplicates=False): + """ + Load required INFO fields from the ref panel we will use to + annotate the target VCF. The specific INFO fields loaded + depends on the vcftype and are specified in INFOFIELDS + + The value of match_on determines what to use as the key in the + returned dictionary. Options: + + - RefMatchTypes.locid: use the ID from the VCF file + - RefMatchTypes.rawalleles: use chrom:pos:ref:alt where ref/alt are + exactly those in the reference VCF + - RefMatchTypes.trimmedalleles: use chrom:pos:ref:alt where ref/alt are + trimmed to discard extra sequence, as is done in bcftools merge :( + see: https://github.com/samtools/bcftools/issues/726 + + Parameters + ---------- + refreader : cyvcf2.VCF + Reader for the reference panel + vcftype : trh.VcfTypes + Based on the TR genotyper used to generate the reference panel + match_on : RefMatchTypes (Optional) + What to use as the locus key to match target to ref panel loci + Default: RefMatchTypes.id + ignore_duplicates : bool + If True, just output a warning about duplicates rather than giving up + + Returns + ------- + metadata : Dict[str, str] + The key depends on the match_on parameter (see above) + Values is a Dict[str, str] with key=infofield and + value=value of that info field in the reference panel + variant_ct : int + Total number of variants + + Raises + ------ + ValueError + If a duplicate locus is found in the reference panel + and ignore_duplicates=False + """ + metadata = {} # chr:pos:ref->info + variant_ct = 0 + for record in refreader: + locdata = {} + for infofield in INFOFIELDS[vcftype]: + infodata = record.INFO.get(infofield, None) + if infodata is not None: + locdata[infofield] = infodata + # Check if we have all required INFO fields + # Otherwise assume it is not a TR + if len(locdata.keys())!=len(INFOFIELDS[vcftype]): + continue + # Add to metadata + locuskey = GetLocusKey(record, match_on=match_on) + # Quit if we found a duplicate TR locus + if locuskey in metadata.keys(): + if ignore_duplicates: + common.WARNING("Warning: duplicate locus detected in refpanel: {locus}".format(locus=locuskey)) + else: + raise ValueError( + "Error: duplicate locus detected in refpanel: {locus}".format(locus=locuskey) + ) + metadata[locuskey] = locdata + variant_ct += 1 + return metadata, variant_ct + +def GetPGenPvarWriter(reader, outprefix, variant_ct): + """ + Generate a PGEN and corresponding PVAR writer. + For PGEN, we return a pgenlib.PgenWriter instance + For PVAR, we create a file object to which we will write + info for each variant as we go. When initialized here we + add the DSLEN INFO header and also the header columns: + #CHROM", "POS", "ID", "REF", "ALT", "INFO" + + In addition to the PGEN/PVAR writers, this function writes + $outprefix.psam wtih sample information. + + Parameters + ---------- + reader : cyvcf2.VCF + Reader for the input VCF file + outprefix : str + Prefix to name output files + Will generate $outprefix.pgen and $outprefix.pvar + variant_ct : int + Number of variants to be written to the PGEN output + + Returns + ------- + pgen_writer : pgenlib.PgenWriter + PGEN writer object + pvar_writer : file object + Writer for the PVAR file + """ + # Write .psam + with open(outprefix+".psam", "w") as f: + f.write("#IID\tSEX\n") + for sample in reader.samples: + f.write("{sample}\t0\n".format(sample=sample)) + # Get pvar writer + pvar_writer = open(outprefix+".pvar", "w") + pvar_writer.write("##fileformat=VCFv4.2\n") # Required if we want the pvar to be valid vcf + pvar_writer.write("##INFO=\n") + pvar_writer.write("\t".join(["#CHROM", "POS", "ID", "REF", "ALT", "QUAL", "FILTER", "INFO"])+"\n") + # Get pgen writer we will continue writing to + pgen_writer = PgenWriter(bytes(outprefix+".pgen", "utf8"), + len(reader.samples), variant_ct=variant_ct, dosage_present=True) + return pgen_writer, pvar_writer + +def WritePvarVariant(pvar_writer, record, minlen, maxlen): + """ + Write variant metadata to a PVAR file + Outputs CHROM, POS, ID, REF, ALT, INFO + REF and ALT are set to dummy values (DUMMY_REF and DUMMY_ALT) + INFO contains the DSLEN field with the min/max allele lengths + observed + + Parameters + ---------- + pvar_writer : file object + Writer for the PVAR file + record : cyvcf2.Variant + Record object for the variant + minlen : float + Minimum TR allele length at this locus (in rpt. units) + maxlen : float + Maximum TR allele length at this locus (in rpt. units) + """ + record_id = record.ID + if record_id is None: + record_id = "." + out_items = [record.CHROM, str(record.POS), str(record_id), DUMMY_REF, DUMMY_ALT, + DUMMY_QUAL, DUMMY_FILTER, + "DSLEN=%.2f,%.2f"%(minlen, maxlen)] + pvar_writer.write("\t".join(out_items)+"\n") + +def getargs(): # pragma: no cover + parser = argparse.ArgumentParser( + __doc__, + formatter_class=utils.ArgumentDefaultsHelpFormatter + ) + inout_group = parser.add_argument_group("Input/output") + inout_group.add_argument("--vcf", help="Input STR VCF file. Must be bgzipped/indexed", type=str, required=True) + inout_group.add_argument("--vcftype", help="Options=%s"%[str(item) for item in trh.VcfTypes.__members__], + type=str, default="auto") + inout_group.add_argument("--out", help="Prefix for output files", type=str, required=True) + inout_group.add_argument("--outtype", help="Options=%s"%[str(item) for item in OutputFileTypes.__members__], + type=str, nargs="+", default=["vcf"]) + annot_group = parser.add_argument_group("Annotations") + annot_group.add_argument( + "--dosages", + help="Compute genotype dosages. " + "Optionally specify how. Options=%s"%[str(item) for item in trh.TRDosageTypes.__members__], + type=str) + annot_group.add_argument( + "--ref-panel", + help="Annotate Beagle-imputed VCF with TR metadata from the reference panel. " + "The reference must be the same VCF used for imputation. ", + type=str) + annot_group.add_argument( + "--match-refpanel-on", + help="What to match loci on between refpanel and target VCF. " + "Options=%s"%[str(item) for item in RefMatchTypes.__members__], + type=str, + default="locid" + ) + annot_group.add_argument( + "--ignore-duplicates", + help="Output a warning but do not crash if duplicate loci in refpanel", + action="store_true" + ) + other_group = parser.add_argument_group("Other options") + other_group.add_argument( + "--chunk-size", + help="If writing a PGEN file, load dosages " + "in chunks of X variants; reduces memory. ", + type=int, + default=DEFAULT_PGEN_BATCHSIZE) + other_group.add_argument("--debug", help="Run in debug mode", action="store_true") + ver_group = parser.add_argument_group("Version") + ver_group.add_argument("--version", action="version", version = '{version}'.format(version=__version__)) + args = parser.parse_args() + return args + +def main(args): + ###### Check input options ####### + if not os.path.exists(args.vcf): + common.WARNING("Error: %s does not exist"%args.vcf) + return 1 + if not os.path.exists(os.path.dirname(os.path.abspath(args.out))): + common.WARNING("Error: The directory which contains the output location {} does" + " not exist".format(args.out)) + return 1 + if os.path.isdir(args.out) and args.out.endswith(os.sep): + common.WARNING("Error: The output location {} is a " + "directory".format(args.out)) + return 1 + if args.ref_panel is not None and not os.path.exists(args.ref_panel): + common.WARNING("Error: %s does not exist"%args.ref_panel) + return 1 + + outtypes = set() + for outtype in args.outtype: + try: + ot = OutputFileTypes[outtype] + outtypes.add(ot) + except KeyError: + common.WARNING("Invalid output type") + return 1 + if args.vcftype != 'auto': + if args.vcftype not in trh.VcfTypes.__members__: + common.WARNING("Invalid vcftype") + return 1 + + dosage_type = None + if args.dosages is not None: + try: + dosage_type = trh.TRDosageTypes[args.dosages] + except KeyError: + common.WARNING("Error: invalid dosages argument") + return 1 + if dosage_type is None and np.all([ot in [OutputFileTypes.pgen] for ot in outtypes]): + common.WARNING("Error: Output type pgen only supported " + "if using option --dosages") + return 1 + if dosage_type not in [trh.TRDosageTypes.beagleap_norm, trh.TRDosageTypes.bestguess_norm] and \ + OutputFileTypes.pgen in outtypes: + common.WARNING("Only normalized dosages are supported for PGEN output.") + return 1 + if args.dosages is None and args.ref_panel is None: + common.WARNING("No operation specified") + return 1 + + + ###### Load reference panel info (optional) ####### + refpanel_metadata = None + refreader = None + if args.ref_panel is not None: + common.MSG("Loading reference panel", debug=True) + refreader = utils.LoadSingleReader(args.ref_panel, lazy=True, samples=set()) + if refreader is None: + return 1 + if args.vcftype != 'auto': + refpanel_vcftype = trh.VcfTypes[args.vcftype] + else: + refpanel_vcftype = trh.InferVCFType(refreader) + if refpanel_vcftype == trh.VcfTypes.popstr: + common.WARNING("Error: reference panel annotation not " + "currently supported for popSTR") + return 1 + try: + match_on = RefMatchTypes[args.match_refpanel_on] + except KeyError: + common.WARNING("Invalid argument to --match-refpanel-on") + return 1 + refpanel_metadata, ref_variant_ct = LoadMetadataFromRefPanel(refreader, refpanel_vcftype, + match_on=match_on, ignore_duplicates=args.ignore_duplicates) + if len(refpanel_metadata.keys()) == 0: + common.WARNING("Error: No TRs detected in reference panel. Was the right vcftype specified? Quitting") + return 1 + common.MSG("Loaded " + str(ref_variant_ct) + " TR loci from ref panel", + debug=True) + + ###### Load reader ####### + reader = utils.LoadSingleReader(args.vcf, checkgz=True) + if reader is None: + return 1 + if args.ref_panel is not None: + vcftype = refpanel_vcftype # should be same as refpanel + elif args.vcftype != 'auto': + vcftype = trh.VcfTypes[args.vcftype] + else: + vcftype = trh.InferVCFType(reader) + + ##### More checks on input ##### + # This check waits until here sicne need to have loaded reader + # and need to wait til refpanel loading to confirm vcf type + if dosage_type in [trh.TRDosageTypes.beagleap, trh.TRDosageTypes.beagleap_norm] \ + and not trh.IsBeagleVCF(reader): + common.WARNING("Error: can only compute beagleap dosages on Beagle VCFs") + return 1 + + ###### Set up writers ####### + # Update reader header, even if not writing VCF output + # This is because we might add VCF fields for parsing + # with TRHarmonizer along the way + if not UpdateVCFHeader(reader, " ".join(sys.argv), vcftype, + dosage_type=dosage_type, refreader=refreader): + common.WARNING("Error: problem initializing vcf header.") + return 1 + if OutputFileTypes.vcf in outtypes: + vcf_writer = cyvcf2.Writer(args.out+".vcf", reader) + + # variant_ct needed for pgen + # If using a ref panel, assume we have same number + # of TRs as the panel + # Otherwise, assume our file is all TRs and use record count + if refpanel_metadata is not None: + variant_ct = ref_variant_ct + else: + variant_ct = reader.num_records + if OutputFileTypes.pgen in outtypes: + pgen_writer, pvar_writer = GetPGenPvarWriter(reader, args.out, variant_ct) + + ###### Process each record ####### + num_variants_processed_batch = 0 + num_variants_processed = 0 + dosages_batch = np.empty((args.chunk_size, len(reader.samples)), dtype=np.float32) + for record in reader: + # If using refpanel, first add required fields + # In that case, only process records in the refpanel + # Otherwise, process all records in the input VCF + if refpanel_metadata is not None: + locuskey = GetLocusKey(record, match_on=match_on) + if locuskey not in refpanel_metadata.keys(): + # If this looks like a TR, but not in our panel + # give up since that is suspicous + # Otherwise it is probably a SNP and we will skip + try: + checkrec = trh.HarmonizeRecord(vcfrecord=record, vcftype=vcftype) + common.WARNING("Error: Detected a TR {chrom}:{pos} not in refpanel".format(chrom=record.CHROM, pos=record.POS)) + return 1 + except: + pass + if args.debug: + common.WARNING("Detected locus not in refpanel: %s"%locuskey) + continue + for infofield in INFOFIELDS[vcftype]: + record.INFO[infofield] = refpanel_metadata[locuskey][infofield] + try: + trrecord = trh.HarmonizeRecord(vcfrecord=record, vcftype=vcftype) + except: + common.WARNING("Error converting {chrom}:{pos} to a TR record. " + "If your file is a mix of SNPs/TRs (e.g. from Beagle) you " + "must provide a reference panel.".format(chrom=record.CHROM, pos=record.POS)) + return 1 + minlen = trrecord.min_allele_length + maxlen = trrecord.max_allele_length + if dosage_type is not None: + dosages = trrecord.GetDosages(dosage_type) + # Update record + record.INFO["DSLEN"] = "{minlen},{maxlen}".format(minlen=minlen, maxlen=maxlen) + record.set_format("TRDS", np.array(dosages)) + # Update batch + dosages_batch[num_variants_processed_batch] = dosages + + # Write to VCF if using vcf output + if OutputFileTypes.vcf in outtypes: + vcf_writer.write_record(record) + + # Write pvar if using pgen output + if OutputFileTypes.pgen in outtypes: + WritePvarVariant(pvar_writer, record, minlen, maxlen) + + num_variants_processed += 1 + num_variants_processed_batch += 1 + + # Reset batch, and write to pgen if using that + if ((num_variants_processed_batch == args.chunk_size) \ + or (num_variants_processed==variant_ct)): + # Write batch + common.MSG("Processed {numvars} variants".format(numvars=num_variants_processed), debug=True) + if OutputFileTypes.pgen in outtypes: + pgen_writer.append_dosages_batch(dosages_batch[:num_variants_processed_batch]) + # Reset + dosages_batch = np.empty((args.chunk_size, len(reader.samples)), dtype=np.float32) + num_variants_processed_batch = 0 + + ###### Cleanup ####### + if OutputFileTypes.pgen in outtypes: + try: + pgen_writer.close() + except RuntimeError: + common.WARNING("Error writing PGEN! The output file is likely invalid. " + "Did you run on files merged with bcftools merge? If so try rerunning " + "with option --match-refpanel-on trimmedalleles or --match-refpanel-on locid.") + return 1 + pvar_writer.close() + if OutputFileTypes.vcf in outtypes: + vcf_writer.close() + return 0 + +def run(): # pragma: no cover + args = getargs() + if args == None: + sys.exit(1) + else: + retcode = main(args) + sys.exit(retcode) + +if __name__ == "__main__": # pragma: no cover + run() \ No newline at end of file diff --git a/trtools/annotaTR/tests/__init__.py b/trtools/annotaTR/tests/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/trtools/annotaTR/tests/test_annotaTR.py b/trtools/annotaTR/tests/test_annotaTR.py new file mode 100644 index 00000000..eda81650 --- /dev/null +++ b/trtools/annotaTR/tests/test_annotaTR.py @@ -0,0 +1,273 @@ +import argparse +import cyvcf2 +import gzip +import os + +import pytest + +from ..annotaTR import * +from trtools.testsupport.utils import assert_same_vcf + +# Set up base argparser +@pytest.fixture(name='args') +def args_fixture(tmpdir): + return args(tmpdir) + +def args(tmpdir): + args = argparse.ArgumentParser() + args.vcf = None + args.vcftype = "auto" + args.out = str(tmpdir / "test") + args.outtype = ["vcf"] + args.dosages = None + args.ref_panel = None + args.match_refpanel_on = "rawalleles" + args.ignore_duplicates = False + args.debug = False + args.chunk_size = 1000 + return args + +@pytest.fixture +def testBeagleDir(vcfdir): + return vcfdir + "/beagle" + +@pytest.fixture +def antrvcfdir(vcfdir): + return os.path.join(vcfdir, "annotaTR_vcfs") + +# Test no such file or directory +def test_WrongFile(args, vcfdir): + fname = os.path.join(vcfdir, "test_non_existent.vcf") + if os.path.exists(fname): + os.remove(fname) + args.vcf = fname + retcode = main(args) + assert retcode==1 + args.vcf = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.ref_panel = fname + retcode = main(args) + assert retcode==1 + args.ref_panel = None + args.vcf = os.path.join(vcfdir, "missing_samples.txt") + retcode = main(args) + assert retcode==1 + +def test_WrongOutDir(args, vcfdir): + fname = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.vcf = fname + args.out = os.path.join("fakedir","test") + retcode = main(args) + assert retcode==1 + args.out = vcfdir + "/" + retcode = main(args) + assert retcode==1 + +def test_OutTypes(args, vcfdir): + fname = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.vcf = fname + args.vcftype = "gangstr" + args.outtype = ["vcf", "pgen"] + args.dosages = "bestguess_norm" + retcode = main(args) + assert retcode==0 + args.outtype = ["pgen", "vcf"] + retcode = main(args) + assert retcode==0 + args.outtype = ["vcf"] + retcode = main(args) + assert retcode==0 + args.outtype = ["vcf", "vcf"] + retcode = main(args) + assert retcode==0 + args.outtype = ["dummy"] + retcode = main(args) + assert retcode==1 + args.outtype = ["pgen"] + retcode = main(args) + assert retcode==0 + # Check the pvar file can be ready by cyvcf2? + #pvarfile = args.out + ".pvar" + #test_reader = cyvcf2.VCF(pvarfile) + +def test_NoOperation(args, vcfdir): + fname = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.vcf = fname + args.vcftype = "gangstr" + args.outtype = ["vcf"] + retcode = main(args) + assert retcode==1 + +def test_VCFType(args, vcfdir): + fname = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.vcf = fname + args.vcftype = "badtype" + args.dosages = "bestguess" + retcode = main(args) + assert retcode==1 + args.vcftype = "auto" + retcode = main(args) + assert retcode==0 + +def test_DosageType(args, vcfdir): + # Non-beagle VCF + fname = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.vcf = fname + args.vcftype = "gangstr" + args.dosages = "bestguess" + retcode = main(args) + assert retcode==0 + args.dosages = "badtype" + retcode = main(args) + assert retcode==1 + args.dosages = "beagleap" + retcode = main(args) + assert retcode==1 + args.dosages = "beagleap_norm" + retcode = main(args) + assert retcode==1 + # Beagle VCF + fname = os.path.join(vcfdir, "beagle", "beagle_imputed_withap.vcf.gz") + args.vcf = fname + args.vcftype = "hipstr" + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + args.dosages = "beagleap_norm" + retcode = main(args) + assert retcode==0 + # No dosage specified should cause error for pgen output + args.dosages = None + args.outtype = ["pgen"] + retcode = main(args) + assert retcode==1 + # Non-norm dosage should also cause error for pgen output + args.dosages = "beagleap" + retcode = main(args) + assert retcode==1 + # norm dosages should be fine for pgen + args.dosages = "beagleap_norm" + retcode = main(args) + assert retcode==0 + +def test_LoadRefpanel(args, vcfdir): + fname = os.path.join(vcfdir, "beagle", "beagle_imputed_withap.vcf.gz") + args.vcf = fname + args.vcftype = "gangstr" + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + retcode = main(args) + assert retcode == 0 + args.vcftype = "auto" + retcode = main(args) + assert retcode == 0 + args.match_refpanel_on = "trimmedalleles" + retcode = main(args) + assert retcode == 0 + args.match_refpanel_on = "locid" + with pytest.raises(ValueError): + main(args) + args.match_refpanel_on = "rawalleles" # set back for future tests + # Bad refpanel + args.ref_panel = os.path.join(vcfdir, "missing_samples.txt") + retcode = main(args) + assert retcode == 1 + # Don't support refpanel if popstr + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + args.vcftype = "popstr" + retcode = main(args) + assert retcode == 1 + # Error if no TRs in refpanel + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel_nostrs.vcf.gz") + args.vcftype = "hipstr" + retcode = main(args) + assert retcode == 1 + # Error if duplicate TR in ref panel + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel_duplocus.vcf.gz") + args.vcftype = "hipstr" + with pytest.raises(ValueError): + main(args) + args.ignore_duplicates = True + retcode = main(args) + assert retcode == 0 + # Fail if missing a required info header + args.vcf = os.path.join(vcfdir, "beagle", "beagle_imputed_withap.vcf.gz") + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel_missinginfoheader.vcf.gz") + args.vcftype = "hipstr" + retcode = main(args) + assert retcode == 1 + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + args.vcftype = "eh" + retcode = main(args) + assert retcode == 1 + # Fail if wrong ref panel + args.vcf = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_hipstr.sorted.vcf.gz") + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + args.vcftype = "hipstr" + retcode = main(args) + assert retcode == 1 + +def test_TrimAlleles(): + ref_allele = "AAAT" + alt_alleles = ["AAATA","AAATAA","AAATAAA"] + new_ref, new_alt = TrimAlleles(ref_allele, alt_alleles) + assert(new_ref == ".") + assert(new_alt == ["A","AA","AAA"]) + ref_allele = "AAATGAC" + alt_alleles = ["AAATAGAC","AAATAAGAC","AAATAAAGAC"] + new_ref, new_alt = TrimAlleles(ref_allele, alt_alleles) + assert(new_ref == ".") + assert(new_alt == ["A","AA","AAA"]) + ref_allele = "GAC" + alt_alleles = ["AGAC","AAGAC","AAAGAC"] + new_ref, new_alt = TrimAlleles(ref_allele, alt_alleles) + assert(new_ref == ".") + assert(new_alt == ["A","AA","AAA"]) + ref_allele = "AATAAGTAAATAAATAAATAA" + alt_alleles = ["AATAAGTAAATAAATAA"] + new_ref, new_alt = TrimAlleles(ref_allele, alt_alleles) + assert(new_ref == "TAAA") + assert(new_alt[0] == ".") + +""" +These tests run annotaTR and compare its output +to output that has been generated by a previous version of +annotaTR and saved in the repo. The results are expected +to be identical. + +These tests are too strict and will often break because +annotaTR output has been intentionally changed +However, the presence of these tests is important because +it should prevent any unexpected changes in output. +If you've reviewed the change in output and find it acceptable, +use trtools/testsupport/sample_vcfs/annotaTR_vcfs/create_test_files.sh +to regenerate the test files with the new version of mergeSTR. +""" + +def test_OutputFilesSame(args, vcfdir, antrvcfdir): + args.vcf = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.dosages = "bestguess" + assert main(args) == 0 + assert_same_vcf(args.out + ".vcf", antrvcfdir + "/gangstr_bestguess.vcf", max_lines_to_compare=200) + + args.vcf = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_gangstr.sorted.vcf.gz") + args.dosages = "bestguess_norm" + assert main(args) == 0 + assert_same_vcf(args.out + ".vcf", antrvcfdir + "/gangstr_bestguess_norm.vcf", max_lines_to_compare=200) + + args.vcf = os.path.join(vcfdir, "dumpSTR_vcfs", "trio_chr21_hipstr.sorted.vcf.gz") + args.vcftype = "hipstr" + args.dosages = "bestguess_norm" + assert main(args) == 0 + assert_same_vcf(args.out + ".vcf", antrvcfdir + "/hipstr_bestguess_norm.vcf", max_lines_to_compare=200) + + args.vcf = os.path.join(vcfdir, "beagle", "1kg_snpstr_21_first_100k_second_50_STRs_imputed.vcf.gz") + args.ref_panel = os.path.join(vcfdir, "beagle", "1kg_snpstr_21_first_100k_first_50_annotated.vcf.gz") + args.vcftype = "hipstr" + args.dosages = "bestguess_norm" + assert main(args) == 0 + assert_same_vcf(args.out + ".vcf", antrvcfdir + "/hipstr_beagle.vcf", max_lines_to_compare=200) + + args.vcf = os.path.join(vcfdir, "beagle", "beagle_imputed_withap.vcf.gz") + args.ref_panel = os.path.join(vcfdir, "beagle", "beagle_refpanel.vcf.gz") + args.vcftype = "hipstr" + args.dosages = "beagleap" + args.match_refpanel_on = "trimmedalleles" + assert main(args) == 0 + assert_same_vcf(args.out + ".vcf", antrvcfdir + "/beagleap_trimmed.vcf", max_lines_to_compare=200) diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/beagleap_trimmed.vcf b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/beagleap_trimmed.vcf new file mode 100644 index 00000000..bf3f06f8 --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/beagleap_trimmed.vcf @@ -0,0 +1,68 @@ +##fileformat=VCFv4.2 +##FILTER= +##filedate=20240809 +##source="beagle.19Apr22.7c0.jar" +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##contig= +##bcftools_viewVersion=1.9+htslib-1.9 +##bcftools_viewCommand=view -h hg38_phased_19Apr22.7c0_ap.vcf.gz; Date=Sat Aug 10 11:59:06 2024 +##INFO= +##INFO= +##bcftools_viewVersion=1.19+htslib-1.20 +##bcftools_viewCommand=view -s HG00097,HG00099,HG00100 beagle_imputed_withap.vcf.gz; Date=Mon Aug 12 12:52:29 2024 +##command-AnnotaTR=/Users/melissagymrek/workspace/TRTools/trtools/annotaTR/annotaTR.py --vcf trtools/testsupport/sample_vcfs/beagle/beagle_imputed_withap.vcf.gz --vcftype hipstr --ref-panel trtools/testsupport/sample_vcfs/beagle/beagle_refpanel.vcf.gz --match-refpanel-on trimmedalleles --dosages beagleap --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/beagleap_trimmed +##FORMAT= +##INFO= +##preimputation_source="beagle.jar (r1399)" +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##preimputation_command=HipSTR-dummycommand +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00097 HG00099 HG00100 +chr21 14280176 . 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TGAATGAATGAATGAATGAATGAA TGAATGAATGAATGAATGAATGAATGAA,TGAATGAATGAATGAATGAATGAATGAATGAA,TGAATGAATGAATGAA . PASS DR2=1,0.92,0.9;AF=0.3119,0.0004,0.0004;END=14292558;IMP;AC=3,0,0;AN=6;START=14292535;PERIOD=4;DSLEN=4.0,8.0 GT:DS:AP1:AP2:TRDS 1|0:1,0,0:1,0,0:0,0,0:13 1|1:2,0,0:1,0,0:1,0,0:14 0|0:0,0,0:0,0,0:0,0,0:12 +chr21 14295225 . ACACACACACACATGCACACACACACGCACACACACACACATACACATATATATACACACACACACAC ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACGCACACATACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACCCATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACATGCACACACACACACATACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACATACATATATATATACACACACACACAC,ACACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATACACACACACACACAC,ACACACACACACACATGCACACACACACACACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATGTATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACATACACACAC,ACACACACACACATGCACACACACACGCACACACACACACACATACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATATACACACACACAC,ACACACACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACATGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACATACATATATATATATACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACGCACACAC,ACACACACACACACATGCACACACACACGCACACACACACACACACATACATATATATATACACACACACACAC . PASS DR2=1,0.86,0.96,0.96,0.09,1,0,0,0.94,0.9,0.99,0.95,0,0.96,0.06,0,1,0.89,1,1,0.97,0.97;AF=0.7716,0.0006,0.0031,0.0008,0.0001,0.0002,0,0,0.0004,0.0005,0.001,0.0009,0,0.0013,0,0,0.0002,0.0005,0.0002,0.0006,0.0002,0.0002;END=14295292;IMP;AC=5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0;AN=6;START=14295225;PERIOD=2;DSLEN=29.0,37.0 GT:DS:AP1:AP2:TRDS 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:70 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:70 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:69 +chr21 14295591 . AAAAATAAAAAAAAAA AAAAATAAAAAAAAA,AAAAATAAAAAAAAAAG,AAAAATAAAAAAAA,AAAAATAAAAAAAAAAA . PASS DR2=1,1,1,0.94;AF=0.058,0.001,0.0004,0.0009;END=14295606;IMP;AC=1,0,0,0;AN=6;START=14295591;PERIOD=1;DSLEN=14.0,17.0 GT:DS:AP1:AP2:TRDS 0|1:1,0,0,0:0,0,0,0:1,0,0,0:31 0|0:0,0,0,0:0,0,0,0:0,0,0,0:32 0|0:0,0,0,0:0,0,0,0:0,0,0,0:32 +chr21 14296463 . AAAAAAAAAAAAAAA AAAAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAACAAAAAAAAAC . PASS DR2=0.99,0.94,0,0.89,0.54;AF=0.7702,0.0088,0,0.0007,0.0003;END=14296477;IMP;AC=5,0,0,0,0;AN=6;START=14296463;PERIOD=1;DSLEN=11.0,16.0 GT:DS:AP1:AP2:TRDS 1|1:2,0,0,0,0:1,0,0,0,0:1,0,0,0,0:28 1|1:2,0,0,0,0:1,0,0,0,0:1,0,0,0,0:28 0|1:1,0,0,0,0:0,0,0,0,0:1,0,0,0,0:29 +chr21 14296873 . TGTGTGTGTGTGAGTGTGTGGGTGT TGTGTGTGTGAGTGTGTGGGTGT,TGCGTGTGTGTGAGTGTGTGGGTGT,TGTGTGTGTGTGAATGTGTGGGTGT,TGTGTGTGTGTGAGTGTGTCGGTGT . PASS DR2=1,1,0,0.02;AF=0.0028,0.0012,0,0;END=14296897;IMP;AC=0,0,0,0;AN=6;START=14296873;PERIOD=2;DSLEN=11.5,12.5 GT:DS:AP1:AP2:TRDS 0|0:0,0,0,0:0,0,0,0:0,0,0,0:25 0|0:0,0,0,0:0,0,0,0:0,0,0,0:25 0|0:0,0,0,0:0,0,0,0:0,0,0,0:25 +chr21 14297077 . TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT TTTATTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTATTTATTTACTTATTTTTATTTATTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTT,TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATTATTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATTTATTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTT,TTTATTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTCATTTATTTATTTATTT,TTTATTTATTTACTTATTTTTATTTTTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTTATTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTT,TTTATTTGTTTATTTAATTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTT . PASS DR2=1,0.99,0.91,0.99,0.99,1,0.92,0.84,0.91,0.95,0.87,1,0.92,0,0.97,0.12,0.95,0.81,1,0,1,0,0.77,0.19;AF=0.2069,0.2166,0.0006,0.1534,0.0816,0.0004,0.0007,0.0003,0.0009,0.0002,0.0005,0.0008,0.0012,0,0.0004,0,0.001,0.0004,0.0004,0,0.0002,0,0.0002,0.0001;END=14297163;IMP;AC=2,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0;AN=6;START=14297077;PERIOD=4;DSLEN=18.75,22.75 GT:DS:AP1:AP2:TRDS 4|1:1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:40.5 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:41.5 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:42.5 +chr21 14298130 . TTTTTTTTTTT TTTTTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTA . PASS DR2=0.97,0.92,0;AF=0.005,0.0081,0;END=14298140;IMP;AC=0,0,0;AN=6;START=14298130;PERIOD=1;DSLEN=10.0,12.0 GT:DS:AP1:AP2:TRDS 0|0:0,0,0:0,0,0:0,0,0:22 0|0:0,0,0:0,0,0:0,0,0:22 0|0:0,0,0:0,0,0:0,0,0:22 +chr21 14298356 . AATAATTAAATAAATAAAT AATAATTAAAAAAATAAAT,AATAATTAAATAAAT . PASS DR2=1,1;AF=0.003,0.0002;END=14298374;IMP;AC=0,0;AN=6;START=14298356;PERIOD=4;DSLEN=3.75,4.75 GT:DS:AP1:AP2:TRDS 0|0:0,0:0,0:0,0:9.5 0|0:0,0:0,0:0,0:9.5 0|0:0,0:0,0:0,0:9.5 +chr21 14303560 . AAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA AAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAATAAATAAAGTAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAAATAAAAAAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAATAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAATAAAATAAAATAAAATAAAATAA,AAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATATAATAA,AAAAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA . PASS DR2=1,0.99,1,0.99,1,0.99,0.98,0.99,0.99,0.98,1,0,0.98,0.96,0.97,0.94,0.94,0.99,0.96,0.99,0.99,1,0.99,0.88,0.93,0.93,1,0.94,0.97,0.84,0.95,0.97,0.96,1,1,1,0.9,0.95,0.93,0.83,1,1,0.91,0.94,0.98,0.87,0.83,0.9,0,0.88,1,0.97,0,1,0.93,0.96,0.93,0.01,0.95,0.84,0,0,1,1,0.9,1,0.92,0.92,1,0.98,1,1,0.91,1,1,0,1;AF=0.0786,0.0601,0.0466,0.1362,0.0004,0.0865,0.0405,0.0311,0.0517,0.0315,0.0589,0,0.0073,0.057,0.0347,0.0145,0.0032,0.0094,0.0004,0.0036,0.0239,0.003,0.003,0.0022,0.0076,0.0018,0.0006,0.0009,0.0023,0.0006,0.0004,0.0054,0.0026,0.0002,0.0004,0.0014,0.0005,0.0012,0.0013,0.0004,0.0006,0.0004,0.0014,0.0018,0.0002,0.0006,0.0004,0.0005,0,0.0009,0.0004,0.0006,0,0.0004,0.0004,0.0002,0.0007,0,0.0009,0.0002,0,0,0.0002,0.0002,0.0005,0.0002,0.0002,0.0002,0.0004,0.0002,0.0002,0.0002,0.0002,0.0002,0.0002,0,0.0002;END=14303611;IMP;AC=1,0,0,0,0,1,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0;AN=6;START=14303560;PERIOD=5;DSLEN=6.4,12.8 GT:DS:AP1:AP2:TRDS 32|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:18.4 9|1:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:20.2 0|6:0,0.06,0,0,0,0.94,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0,0.06,0,0,0,0.94,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:20.88 +chr21 14312435 . TACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA TACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,TACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,TACACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,TACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,TACACACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,TACACACACACACACACACAAAGAGGGAGAGAGAGA,TACACACACACACACACACAAAGAGGGAGAGGGAGAGAGA,TACACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGAGA . PASS DR2=1,1,0.99,0.99,0.97,0,1,0;AF=0.2923,0.1286,0.0277,0.0042,0.0036,0,0.0002,0;END=14312474;IMP;AC=0,1,1,0,0,0,0,0;AN=6;START=14312435;PERIOD=2;DSLEN=18.0,24.0 GT:DS:AP1:AP2:TRDS 0|2:0,1,0,0,0,0,0,0:0,0,0,0,0,0,0,0:0,1,0,0,0,0,0,0:41 0|3:0,0,1,0,0,0,0,0:0,0,0,0,0,0,0,0:0,0,1,0,0,0,0,0:43 0|0:0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0:40 +chr21 14321642 . TTTTTTTTTTTTT TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTTTTT . PASS DR2=1,0.98,0.97,0.82,0.56;AF=0.2755,0.0649,0.0409,0.0003,0.0003;END=14321654;IMP;AC=1,0,0,0,0;AN=6;START=14321642;PERIOD=1;DSLEN=11.0,16.0 GT:DS:AP1:AP2:TRDS 0|0:0,0,0,0,0:0,0,0,0,0:0,0,0,0,0:26 0|1:1,0,0,0,0:0,0,0,0,0:1,0,0,0,0:25 0|0:0,0,0,0,0:0,0,0,0,0:0,0,0,0,0:26 +chr21 14324677 . AAAAAAAAAAA AAAAAAAAAGA,AAAAAAAAAAAA,GAAAAAAAAAA,AAAAAAAAAA,AAAAATAAAAA,AAAAAAAAAAGA . PASS DR2=0.99,1,0,0.78,0.01,0;AF=0.0049,0.0062,0,0.0002,0,0;END=14324687;IMP;AC=0,0,0,0,0,0;AN=6;START=14324677;PERIOD=1;DSLEN=10.0,12.0 GT:DS:AP1:AP2:TRDS 0|0:0,0,0,0,0,0:0,0,0,0,0,0:0,0,0,0,0,0:22 0|0:0,0,0,0,0,0:0,0,0,0,0,0:0,0,0,0,0,0:22 0|0:0,0,0,0,0,0:0,0,0,0,0,0:0,0,0,0,0,0:22 +chr21 14326763 . AAGAAAGAAACAGAGAGAAAGAAAGAAAGAAAGAC AAGAAAGAAACAGAGAGAAAGAAAGAAAGAA,AAGAAAGAAACAGAGAGAAAGAAAGAAAGAAAGAA,AAGAAAGAAACAGAGAGAAAGAAAGAAAGAAAGAT . PASS DR2=1,0.99,0.01;AF=0.1048,0.4861,0;END=14326797;IMP;AC=1,3,0;AN=6;START=14326763;PERIOD=4;DSLEN=7.75,8.75 GT:DS:AP1:AP2:TRDS 2|2:0,2,0:0,1,0:0,1,0:17.5 2|1:1,1,0:0,1,0:1,0,0:16.5 0|0:0,0,0:0,0,0:0,0,0:17.5 diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/create_test_files.sh b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/create_test_files.sh new file mode 100755 index 00000000..86de9352 --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/create_test_files.sh @@ -0,0 +1,40 @@ +#!/usr/bin/env bash + +# This command should be run from the root of the repo + +python -m trtools.annotaTR.annotaTR \ + --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_gangstr.sorted.vcf.gz \ + --dosages bestguess \ + --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess + +python -m trtools.annotaTR.annotaTR \ + --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_gangstr.sorted.vcf.gz \ + --dosages bestguess_norm \ + --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess_norm + +python -m trtools.annotaTR.annotaTR \ + --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_hipstr.sorted.vcf.gz --vcftype hipstr \ + --dosages bestguess_norm \ + --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_bestguess_norm + +python -m trtools.annotaTR.annotaTR \ + --vcf trtools/testsupport/sample_vcfs/beagle/1kg_snpstr_21_first_100k_second_50_STRs_imputed.vcf.gz \ + --vcftype hipstr \ + --ref-panel trtools/testsupport/sample_vcfs/beagle/1kg_snpstr_21_first_100k_first_50_annotated.vcf.gz \ + --dosages bestguess_norm \ + --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_beagle + +python -m trtools.annotaTR.annotaTR \ + --vcf trtools/testsupport/sample_vcfs/beagle/beagle_imputed_withap.vcf.gz \ + --vcftype hipstr \ + --ref-panel trtools/testsupport/sample_vcfs/beagle/beagle_refpanel.vcf.gz \ + --match-refpanel-on trimmedalleles \ + --dosages beagleap \ + --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/beagleap_trimmed + +# Restrict each output to 200 lines to keep files small +for outfile in gangstr_bestguess gangstr_bestguess_norm hipstr_bestguess_norm hipstr_beagle beagleap_trimmed +do + cat trtools/testsupport/sample_vcfs/annotaTR_vcfs/${outfile}.vcf | head -n 200 > tmp + mv tmp trtools/testsupport/sample_vcfs/annotaTR_vcfs/${outfile}.vcf +done \ No newline at end of file diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess.vcf b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess.vcf new file mode 100644 index 00000000..5e3ee8a5 --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess.vcf @@ -0,0 +1,200 @@ +##fileformat=VCFv4.1 +##FILTER= +##command=GangSTR-2.4.4 --bam /gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12878.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12891.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12892.bam --ref /storage/resources/dbase/human/hg19/hg19.fa --out pgtrio_chr21 --regions hg19_ver13_1.bed --quiet --chrom chr21 +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##command-AnnotaTR=/Users/melissagymrek/workspace/TRTools/trtools/annotaTR/annotaTR.py --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_gangstr.sorted.vcf.gz --dosages bestguess --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess +##FORMAT= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 NA12891 NA12892 +chr21 9489666 . gtatatgtatat . . . END=9489677;RU=gtatat;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:129:1:2,2:2-2,2-2:35,94,0,0:2,35:NULL:1010.57:318.314,73.8073:0,0:-1,-1,-1:4 0/0:137:1:2,2:2-2,2-2:54,83,0,0:2,54:NULL:968.627:301.344,62.7839:0,0:-1,-1,-1:4 0/0:148:1:2,2:2-2,2-2:47,101,0,0:2,47:NULL:1101.84:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9489775 . tatgtatg . . . END=9489782;RU=tatg;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:102:1:2,2:2-2,2-2:54,48,0,0:2,54:NULL:665.189:318.314,73.8073:0,0:-1,-1,-1:4 0/0:79:1:2,2:2-2,2-2:51,28,0,0:2,51:NULL:465.025:301.344,62.7839:0,0:-1,-1,-1:4 0/0:106:1:2,2:2-2,2-2:60,46,0,0:2,60:NULL:650.205:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9500096 . ataataataataataataata ataataataataataata . . END=9500116;RU=ata;PERIOD=3;REF=7;GRID=3,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/1:100:1:6,6:6-6,6-6:51,37,0,11:6,51:4,2|5,6|6,3:634.015:318.314,73.8073:0,0:-1,-1,-1:12 1/1:150:1:6,6:6-6,6-6:86,44,0,20:6,86:3,5|4,3|5,7|6,5:907.256:301.344,62.7839:0,0:-1,-1,-1:12 1/1:124:0.769376:6,6:6-7,6-7:66,37,0,20:6,52|7,14:3,2|4,4|5,5|6,9:801.727:305.271,63.0724:0.499387,0.499387:-1,-1,-1:12 +chr21 9501849 . atatatatatatat atatatatatat . . END=9501862;RU=at;PERIOD=2;REF=7;GRID=1,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:75:0.999989:6,7:6-6,7-7:22,51,0,1:6,8|7,14:5,1:554.37:318.314,73.8073:0.139319,0:-1,-1,-1:13 0/0:89:0.490757:7,7:3-7,3-7:26,61,0,0:6,5|7,21:NULL:647.833:301.344,62.7839:1.00747,1.00747:-1,-1,-1:14 1/0:110:1:6,7:6-6,7-7:37,71,0,2:6,14|7,23:4,1|5,1:783.874:305.271,63.0724:0.0990099,0:-1,-1,-1:13 +chr21 9502317 . ttctctttctctttctct . . . END=9502334;RU=ttctct;PERIOD=6;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:83:1:3,3:3-3,3-3:40,37,0,6:3,40:2,6:552.082:318.314,73.8073:0,0:-1,-1,-1:6 0/0:116:1:3,3:3-3,3-3:52,52,0,12:3,52:2,12:757.738:301.344,62.7839:0,0:-1,-1,-1:6 0/0:117:1:3,3:3-3,3-3:66,46,0,5:3,66:2,5:721.51:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9514260 . aaataaataaat . . . END=9514271;RU=aaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:150:1:3,3:3-3,3-3:84,62,0,4:3,84:2,4:925.215:318.314,73.8073:0,0:-1,-1,-1:6 0/0:162:1:3,3:3-3,3-3:90,63,0,9:3,90:2,9:983.727:301.344,62.7839:0,0:-1,-1,-1:6 0/0:203:1:3,3:3-3,3-3:122,66,0,15:3,122:2,15:1197.02:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9519030 . aaataaat . . . END=9519037;RU=aaat;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:60,74,0,0:2,60:NULL:884.802:318.314,73.8073:0,0:-1,-1,-1:4 0/0:166:1:2,2:2-2,2-2:77,89,0,0:2,77:NULL:1071.46:301.344,62.7839:0,0:-1,-1,-1:4 0/0:187:1:2,2:2-2,2-2:94,93,0,0:2,94:NULL:1178.63:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9522213 . attcattcattc . . . END=9522224;RU=attc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:193:1:3,3:3-3,3-3:92,88,0,13:3,92:2,13:1235.13:318.314,73.8073:0,0:-1,-1,-1:6 0/0:209:1:3,3:3-3,3-3:117,78,0,14:3,117:2,14:1283.31:301.344,62.7839:0,0:-1,-1,-1:6 0/0:230:1:3,3:3-3,3-3:129,82,0,19:3,129:2,19:1408.82:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9531868 . atagatagatagatagatag atagatagatagatagatagatag,atagatagatagatagatagatagatagatagatagatagatag,atagatagatagatagatagatagatagatagatagatagatagatag . . END=9531887;RU=atag;PERIOD=4;REF=5;GRID=2,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,12.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 3/3:130:0.375962:12,12:8-12,8-12:2,80,0,48:12,2:3,3|4,5|5,5|6,5|7,7|8,9|9,6|10,3|11,3|12,2:1052.95:318.314,73.8073:1.2476,1.2476:-1,-1,-1:24 2/2:181:0.349551:11,11:10-11,10-11:0,103,0,77:NULL:2,12|3,6|4,5|5,8|6,8|7,6|8,12|9,8|10,8|11,4:1452.9:301.344,62.7839:0.412766,0.412766:-1,-1,-1:22 1/3:155:0.821642:6,12:6-6,11-12:9,88,0,56:6,9:2,4|3,4|4,6|5,6|6,10|7,5|8,6|9,6|10,4|11,3|12,2:1234.27:305.271,63.0724:0,0.363246:-1,-1,-1:18 +chr21 9536938 . tggaatggaa . . . END=9536947;RU=tggaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:130:1:2,2:2-2,2-2:65,65,0,0:2,65:NULL:827.982:318.314,73.8073:0,0:-1,-1,-1:4 0/0:151:1:2,2:2-2,2-2:71,80,0,0:2,71:NULL:980.534:301.344,62.7839:0,0:-1,-1,-1:4 0/0:175:1:2,2:2-2,2-2:88,87,0,0:2,88:NULL:1118.99:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9542893 . gtggggtggg . . . END=9542902;RU=gtggg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:110:1:2,2:2-2,2-2:45,65,0,0:2,45:NULL:755.699:318.314,73.8073:0,0:-1,-1,-1:4 0/0:126:1:2,2:2-2,2-2:58,68,0,0:2,58:NULL:835.458:301.344,62.7839:0,0:-1,-1,-1:4 0/0:132:1:2,2:2-2,2-2:66,66,0,0:2,66:NULL:856.831:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9544462 . ccctggacctgccctggacctg . . . END=9544483;RU=ccctggacctg;PERIOD=11;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:135:1:2,2:2-2,2-2:46,89,0,0:1,2|2,44:NULL:991.733:318.314,73.8073:0.0990099,0.0990099:-1,-1,-1:4 0/0:181:1:2,2:2-2,2-2:56,125,0,0:1,2|2,54:NULL:1334.25:301.344,62.7839:0,0:-1,-1,-1:4 0/0:172:1:2,2:2-2,2-2:64,108,0,0:2,64:NULL:1210.57:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9544689 . cccagacccaga . . . END=9544700;RU=cccaga;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:153:1:2,2:2-2,2-2:62,91,0,0:2,62:NULL:1063.75:318.314,73.8073:0,0:-1,-1,-1:4 0/0:175:1:2,2:2-2,2-2:74,101,0,0:2,74:NULL:1186.48:301.344,62.7839:0,0:-1,-1,-1:4 0/0:163:1:2,2:2-2,2-2:79,84,0,0:2,79:NULL:1069.94:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9545748 . gccctgccctgccct . . . END=9545762;RU=gccct;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:139:1:3,3:3-3,3-3:56,76,0,7:3,56:2,7:953.496:318.314,73.8073:0,0:-1,-1,-1:6 0/0:163:1:3,3:3-3,3-3:62,94,0,7:3,62:2,7:1143.59:301.344,62.7839:0,0:-1,-1,-1:6 0/0:181:1:3,3:3-3,3-3:80,89,0,12:3,80:2,12:1204.84:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9545997 . ccctgcccctgc . . . END=9546008;RU=ccctgc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:116:1:2,2:2-2,2-2:67,49,0,0:2,67:NULL:707.853:318.314,73.8073:0,0:-1,-1,-1:4 0/0:147:1:2,2:2-2,2-2:77,70,0,0:2,77:NULL:931.406:301.344,62.7839:0,0:-1,-1,-1:4 0/0:144:1:2,2:2-2,2-2:78,66,0,0:2,78:NULL:902.577:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9546390 . gccctgccct . . . END=9546399;RU=gccct;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:115:1:2,2:2-2,2-2:64,51,0,0:2,64:NULL:725.256:318.314,73.8073:0,0:-1,-1,-1:4 0/0:96:1:2,2:2-2,2-2:56,40,0,0:2,56:NULL:591.825:301.344,62.7839:0,0:-1,-1,-1:4 0/0:132:1:2,2:2-2,2-2:78,54,0,0:2,78:NULL:806.841:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9546720 . ctggccctggcc . . . END=9546731;RU=ctggcc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:118:1:2,2:2-2,2-2:55,62,0,0:2,55:NULL:780.779:318.314,73.8073:0,0:-1,-1,-1:4 0/0:126:1:2,2:2-2,2-2:52,74,0,0:2,52:NULL:851.068:301.344,62.7839:0,0:-1,-1,-1:4 0/0:127:1:2,2:2-2,2-2:68,59,0,0:2,68:NULL:803.672:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9548764 . tgccctgccc . . . END=9548773;RU=tgccc;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:121:1:2,2:2-2,2-2:41,80,0,0:2,41:NULL:876.203:318.314,73.8073:0,0:-1,-1,-1:4 0/0:112:1:2,2:2-2,2-2:66,46,0,0:2,66:NULL:686.795:301.344,62.7839:0,0:-1,-1,-1:4 0/0:139:1:2,2:2-2,2-2:62,77,0,0:2,62:NULL:926.532:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9549157 . tgaccctgaccc . . . END=9549168;RU=tgaccc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:138:1:2,2:2-2,2-2:60,78,0,0:2,60:NULL:932.635:318.314,73.8073:0,0:-1,-1,-1:4 0/0:150:1:2,2:2-2,2-2:67,83,0,0:2,67:NULL:1000.13:301.344,62.7839:0,0:-1,-1,-1:4 0/0:150:1:2,2:2-2,2-2:68,82,0,0:2,68:NULL:1008.47:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9549337 . gccctgccct . . . END=9549346;RU=gccct;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:114:1:2,2:2-2,2-2:46,68,0,0:2,46:NULL:794.615:318.314,73.8073:0,0:-1,-1,-1:4 0/0:143:1:2,2:2-2,2-2:63,80,0,0:2,63:NULL:951.114:301.344,62.7839:0,0:-1,-1,-1:4 0/0:152:1:2,2:2-2,2-2:75,77,0,0:2,75:NULL:978.41:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9569046 . tatatatatatatata tatatatatatata,tatatatatatatatata,tatatatatatatatatatata . . END=9569061;RU=ta;PERIOD=2;REF=8;GRID=4,14;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,11.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/3:50:0.946293:8,11:8-9,9-11:30,16,0,3:8,12|9,11|11,7:6,2|8,1:339.671:318.314,73.8073:0.431574,0.957892:-1,-1,-1:19 0/2:20:0.888563:8,9:7-8,7-11:17,1,0,2:7,3|8,8|9,4|11,2:7,1|8,1:129.103:301.344,62.7839:0.525033,1.35358:-1,-1,-1:17 1/0:35:0.996543:7,8:7-9,8-9:29,3,0,2:7,8|8,15|9,6:4,1|5,1:202.29:305.271,63.0724:0.944183,0.323567:-1,-1,-1:15 +chr21 9573928 . aaacaaacaaac . . . END=9573939;RU=aaac;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:159:1:3,3:3-3,3-3:80,66,0,13:3,80:2,13:1010.39:318.314,73.8073:0,0:-1,-1,-1:6 0/0:116:1:3,3:3-3,3-3:65,45,0,6:3,65:2,6:706.654:301.344,62.7839:0,0:-1,-1,-1:6 0/0:209:1:3,3:3-3,3-3:110,79,0,19:3,110:2,19:1288.76:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9579664 . tttgatttga . . . END=9579673;RU=tttga;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:98:1:2,2:2-2,2-2:55,43,0,0:2,55:NULL:606.421:318.314,73.8073:0,0:-1,-1,-1:4 0/0:104:1:2,2:2-2,2-2:66,38,0,0:2,66:NULL:604.144:301.344,62.7839:0,0:-1,-1,-1:4 0/0:125:1:2,2:2-2,2-2:86,39,0,0:2,86:NULL:696.417:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9593840 . ctgctgctgctg . . . END=9593851;RU=ctg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:176:1:4,4:4-4,4-4:95,76,0,5:4,95:3,5:1105.54:318.314,73.8073:0,0:-1,-1,-1:8 0/0:187:1:4,4:4-4,4-4:93,84,0,10:4,93:3,10:1186.13:301.344,62.7839:0,0:-1,-1,-1:8 0/0:204:1:4,4:4-4,4-4:115,84,0,5:4,115:3,5:1237.24:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 9739491 . ttaaattaaa . . . END=9739500;RU=ttaaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:84,50,0,0:2,84:NULL:790.511:318.314,73.8073:0,0:-1,-1,-1:4 0/0:89:1:2,2:2-2,2-2:64,25,0,0:2,64:NULL:483.028:301.344,62.7839:0,0:-1,-1,-1:4 0/0:109:1:2,2:2-2,2-2:67,42,0,0:2,67:NULL:637.845:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9742909 . atttatttattt . . . END=9742920;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:95:1:3,3:3-3,3-3:33,51,0,11:3,33:2,11:663.736:318.314,73.8073:0,0:-1,-1,-1:6 0/0:40:0.999911:3,3:3-3,3-3:17,21,0,2:3,17:2,2:273.707:301.344,62.7839:0,0:-1,-1,-1:6 0/0:93:1:3,3:3-3,3-3:31,53,0,9:3,31:2,9:656.847:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9743363 . tttatttattta . . . END=9743374;RU=ttta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:72:1:3,3:3-3,3-3:30,36,0,6:3,30:2,6:496.194:318.314,73.8073:0,0:-1,-1,-1:6 0/0:50:1:3,3:3-3,3-3:26,18,0,6:3,26:2,6:316.83:301.344,62.7839:0,0:-1,-1,-1:6 0/0:70:1:3,3:3-3,3-3:33,27,0,10:3,33:2,10:451.407:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9745317 . taaattaaattaaat . . . END=9745331;RU=taaat;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:114:1:3,3:3-3,3-3:65,38,0,11:3,65:2,11:683.244:318.314,73.8073:0,0:-1,-1,-1:6 0/0:92:1:3,3:3-3,3-3:57,21,0,14:3,57:2,14:521.766:301.344,62.7839:0,0:-1,-1,-1:6 0/0:121:1:3,3:3-3,3-3:59,45,0,17:3,59:2,17:750.943:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9746400 . gcctgcctgcct . . . END=9746411;RU=gcct;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:91:1:3,3:3-3,3-3:56,30,0,5:3,56:2,5:529.993:318.314,73.8073:0,0:-1,-1,-1:6 0/0:68:1:3,3:3-3,3-3:46,19,0,3:3,46:2,3:382.088:301.344,62.7839:0,0:-1,-1,-1:6 0/0:97:1:3,3:3-3,3-3:69,24,0,4:3,69:2,4:535.216:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9750137 . aaaataaaataaaataaaat aaaataaaataaaataaaataaaataaaataaaat . . END=9750156;RU=aaaat;PERIOD=5;REF=4;GRID=1,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:139:0.999313:4,7:4-4,4-7:40,63,0,36:4,34|5,4|7,2:2,4|3,26|4,2|5,2|6,1|7,1:1002.29:318.314,73.8073:0,0.89526:-1,-1,-1:11 0/0:116:0.999767:4,4:4-7,4-7:36,53,0,27:4,32|5,4:2,5|3,20|4,1|7,1:818.639:301.344,62.7839:1.1947,1.1947:-1,-1,-1:8 0/1:158:0.999968:4,7:4-4,4-7:57,64,0,37:4,52|5,2|7,3:2,7|3,25|4,2|6,1|7,2:1090.38:305.271,63.0724:0,1.12244:-1,-1,-1:11 +chr21 9750998 . ttattattattatta . . . END=9751012;RU=tta;PERIOD=3;REF=5;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:104:1:5,5:5-5,5-5:56,30,0,18:4,4|5,52:3,2|4,16:653.516:318.314,73.8073:0,0:-1,-1,-1:10 0/0:64:1:5,5:5-5,5-5:38,19,0,6:5,38:4,6:376.856:301.344,62.7839:0,0:-1,-1,-1:10 0/0:112:1:5,5:5-5,5-5:59,37,0,16:4,3|5,56:3,4|4,12:703.895:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 9753490 . agaaagaaagaa . . . END=9753501;RU=agaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:102:1:3,3:3-3,3-3:73,28,0,1:3,73:2,1:565.197:318.314,73.8073:0,0:-1,-1,-1:6 0/0:62:1:3,3:3-3,3-3:43,12,0,7:3,43:2,7:344.716:301.344,62.7839:0,0:-1,-1,-1:6 0/0:90:1:3,3:3-3,3-3:64,20,0,6:3,64:2,6:495.016:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 9757375 . ttgtttgt . . . END=9757382;RU=ttgt;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:48:0.999959:2,2:2-2,2-2:18,30,0,0:2,18:NULL:337.967:318.314,73.8073:0,0:-1,-1,-1:4 0/0:32:0.997699:2,2:2-2,2-2:12,20,0,0:2,12:NULL:218.431:301.344,62.7839:0,0:-1,-1,-1:4 0/0:65:1.00001:2,2:2-2,2-2:22,43,0,0:2,22:NULL:457.344:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9760484 . aaaggaaagg . . . END=9760493;RU=aaagg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:44:1:2,2:2-2,2-2:24,20,0,0:2,24:NULL:280.685:318.314,73.8073:0,0:-1,-1,-1:4 0/0:24:0.999364:2,2:2-2,2-2:14,10,0,0:2,14:NULL:146.806:301.344,62.7839:0,0:-1,-1,-1:4 0/0:41:1:2,2:2-2,2-2:23,18,0,0:2,23:NULL:252.272:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 9889282 . ttaaattaaa . . . END=9889291;RU=ttaaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:99:1:2,2:2-2,2-2:51,48,0,0:2,51:NULL:630.114:318.314,73.8073:0,0:-1,-1,-1:4 0/0:91:1:2,2:2-2,2-2:47,44,0,0:2,47:NULL:574.234:301.344,62.7839:0,0:-1,-1,-1:4 0/0:79:1:2,2:2-2,2-2:51,28,0,0:2,51:NULL:455.96:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10209954 . cacacacacacacaca . . . END=10209969;RU=ca;PERIOD=2;REF=8;GRID=4,11;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:73:1:8,8:8-8,8-8:25,43,0,4:8,25:6,3|7,1:512.766:318.314,73.8073:0,0:-1,-1,-1:16 0/0:74:1:8,8:8-8,8-8:26,44,0,4:8,26:4,1|5,2|6,1:525.289:301.344,62.7839:0,0:-1,-1,-1:16 0/0:126:1:8,8:8-8,8-8:56,52,0,17:8,56:4,2|5,3|6,3|7,9:820.528:305.271,63.0724:0,0:-1,-1,-1:16 +chr21 10211308 . tttgttttgt . . . END=10211317;RU=tttgt;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:162:1:2,2:2-2,2-2:79,83,0,0:2,79:NULL:1056.32:318.314,73.8073:0,0:-1,-1,-1:4 0/0:183:1:2,2:2-2,2-2:80,103,0,0:2,80:NULL:1246.11:301.344,62.7839:0,0:-1,-1,-1:4 0/0:176:1:2,2:2-2,2-2:86,90,0,0:2,86:NULL:1130.71:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10371459 . acacacacacacacacacac acacacacacacacacacacac,acacacacacacacacacacacacac,acacacacacacacacacacacacacacacacac . . END=10371478;RU=ac;PERIOD=2;REF=10;GRID=7,20;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=10.0,17.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/2:142:0.999999:11,13:11-11,12-13:53,65,0,24:10,9|11,18|12,14|13,8|14,4:5,3|6,5|7,5|8,3|9,3|10,1|11,2|12,1|13,1:1093.41:318.314,73.8073:0.0990099,0.465241:-1,-1,-1:24 1/2:110:1:11,13:11-11,13-14:40,51,0,19:11,18|12,5|13,11|14,6:6,2|7,2|8,3|9,3|10,7|12,1|13,1:821.11:301.344,62.7839:0.0990099,0.298675:-1,-1,-1:24 0/3:146:0.949887:10,17:10-11,11-17:69,61,0,16:10,29|11,24|12,6|17,10:5,4|6,2|7,2|8,1|9,4|11,1|15,1|16,1:1112.25:305.271,63.0724:0.499975,1.4183:-1,-1,-1:27 +chr21 10371629 . attattattatt . . . END=10371640;RU=att;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:113:1:4,4:4-4,4-4:52,54,0,7:4,52:3,7:747.04:318.314,73.8073:0,0:-1,-1,-1:8 0/0:113:1:4,4:4-4,4-4:41,64,0,8:4,41:3,8:782.882:301.344,62.7839:0,0:-1,-1,-1:8 0/0:117:1:4,4:4-4,4-4:61,49,0,7:4,61:3,7:738.106:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10372155 . tttgtttgtttg . . . END=10372166;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:132:1:3,3:3-3,3-3:49,67,0,16:3,49:2,16:913.322:318.314,73.8073:0,0:-1,-1,-1:6 0/0:121:1:3,3:3-3,3-3:63,52,0,6:3,63:2,6:769.706:301.344,62.7839:0,0:-1,-1,-1:6 0/0:122:1:3,3:3-3,3-3:58,53,0,11:3,58:2,11:784.395:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10373906 . ttattattattatta . . . END=10373920;RU=tta;PERIOD=3;REF=5;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:5,5:5-5,5-5:68,77,0,11:5,68:3,2|4,9:1043.83:318.314,73.8073:0,0:-1,-1,-1:10 0/0:121:1:5,5:5-5,5-5:75,40,0,5:5,75:4,5:712.521:301.344,62.7839:0,0:-1,-1,-1:10 0/0:162:1:5,5:5-5,5-5:93,58,0,11:5,93:4,11:982.247:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10376334 . caaaaaacaaaaaacaaaaaa . . . END=10376354;RU=caaaaaa;PERIOD=7;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:170:1:3,3:3-3,3-3:87,64,0,19:3,87:2,19:1056:318.314,73.8073:0,0:-1,-1,-1:6 0/0:140:1:3,3:3-3,3-3:66,56,0,18:3,66:2,18:889.813:301.344,62.7839:0,0:-1,-1,-1:6 0/0:143:1:3,3:3-3,3-3:70,57,0,16:3,70:2,16:917.17:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10378210 . acacacacacac . . . END=10378221;RU=ac;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:169:1:6,6:6-6,6-6:90,64,0,15:6,90:4,5|5,10:1053.43:318.314,73.8073:0,0:-1,-1,-1:12 0/0:134:1:6,6:6-6,6-6:71,50,0,12:6,71:4,3|5,8|6,1:824.068:301.344,62.7839:0,0:-1,-1,-1:12 0/0:195:1:6,6:6-6,6-6:89,91,0,15:6,89:4,6|5,9:1270.97:305.271,63.0724:0,0:-1,-1,-1:12 +chr21 10380239 . tttatttatttattta . . . END=10380254;RU=ttta;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:190:1:4,4:4-4,4-4:78,87,0,25:4,78:2,7|3,18:1258.79:318.314,73.8073:0,0:-1,-1,-1:8 0/0:161:1:4,4:4-4,4-4:78,63,0,20:4,78:2,3|3,17:1020.63:301.344,62.7839:0,0:-1,-1,-1:8 0/0:198:1:4,4:4-4,4-4:97,81,0,20:4,97:2,7|3,13:1264.74:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10381150 . actcactcactc . . . END=10381161;RU=actc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:166:1:3,3:3-3,3-3:91,67,0,8:3,91:2,8:1029.5:318.314,73.8073:0,0:-1,-1,-1:6 0/0:164:1:3,3:3-3,3-3:85,61,0,18:3,85:2,18:1013.78:301.344,62.7839:0,0:-1,-1,-1:6 0/0:153:1:3,3:3-3,3-3:76,62,0,15:3,76:2,15:969.794:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10385412 . tttgtttgtttgtttg . . . END=10385427;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:4,4:4-4,4-4:65,70,0,21:4,65:2,4|3,17:1032.79:318.314,73.8073:0,0:-1,-1,-1:8 0/0:139:1:4,4:4-4,4-4:81,43,0,15:4,81:2,3|3,12:837.757:301.344,62.7839:0,0:-1,-1,-1:8 0/0:177:1:4,4:4-4,4-4:94,68,0,15:4,94:2,6|3,9:1098.4:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10385767 . ttattttatt . . . END=10385776;RU=ttatt;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:122:1:2,2:2-2,2-2:60,62,0,0:2,60:NULL:787.302:318.314,73.8073:0,0:-1,-1,-1:4 0/0:137:1:2,2:2-2,2-2:70,67,0,0:2,70:NULL:861.15:301.344,62.7839:0,0:-1,-1,-1:4 0/0:109:1:2,2:2-2,2-2:49,60,0,0:2,49:NULL:722.057:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10390611 . tttgtttgtttgtttg . . . END=10390626;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:171:1:4,4:4-4,4-4:78,83,0,10:4,78:2,3|3,7:1116.69:318.314,73.8073:0,0:-1,-1,-1:8 0/0:155:1:4,4:4-4,4-4:73,63,0,19:4,73:3,19:974.375:301.344,62.7839:0,0:-1,-1,-1:8 0/0:165:1:4,4:4-4,4-4:85,70,0,10:4,85:2,2|3,8:1043.71:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10390756 . ttgtttgtttgt . . . END=10390767;RU=ttgt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:79,75,0,6:3,79:2,6:1025.03:318.314,73.8073:0,0:-1,-1,-1:6 0/0:140:1:3,3:3-3,3-3:63,65,0,12:3,63:2,12:912.785:301.344,62.7839:0,0:-1,-1,-1:6 0/0:153:1:3,3:3-3,3-3:79,66,0,8:3,79:2,8:955.713:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10393957 . tgttttgttttgttt . . . END=10393971;RU=tgttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:159:1:3,3:3-3,3-3:64,79,0,16:3,64:2,16:1063.74:318.314,73.8073:0,0:-1,-1,-1:6 0/0:148:1:3,3:3-3,3-3:78,58,0,12:3,78:2,12:925.517:301.344,62.7839:0,0:-1,-1,-1:6 0/0:195:1:3,3:3-3,3-3:94,77,0,24:3,94:2,24:1236.54:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10397219 . ttcattcattca . . . END=10397230;RU=ttca;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:152:1:3,3:3-3,3-3:70,71,0,11:3,70:2,11:991.799:318.314,73.8073:0,0:-1,-1,-1:6 0/0:147:1:3,3:3-3,3-3:73,61,0,13:3,73:2,13:915.204:301.344,62.7839:0,0:-1,-1,-1:6 0/0:156:1:3,3:3-3,3-3:79,67,0,10:3,79:2,10:981.031:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10401098 . acacacacacacacacacacacac acacacacacacacac,acacacacacacacacacac,acacacacacacacacacacac,acacacacacacacacacacacacac . . END=10401121;RU=ac;PERIOD=2;REF=12;GRID=5,16;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,13.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:153:1:8,12:8-8,11-12:59,61,0,32:8,21|10,8|11,9|12,21:4,5|5,4|6,4|7,8|8,3|9,5|10,2|11,1:1145.79:318.314,73.8073:0,0.311527:-1,-1,-1:20 3/0:137:1:11,12:10-11,10-12:63,58,0,15:10,14|11,26|12,23:4,1|5,5|7,2|8,1|10,2|11,4:972.86:301.344,62.7839:0.284901,0.43384:-1,-1,-1:23 2/4:167:1:10,13:8-10,8-13:63,81,0,23:8,16|10,20|11,12|13,15:4,1|5,3|6,1|7,6|8,4|9,4|10,2|12,2:1317.74:305.271,63.0724:0.569802,1.0846:-1,-1,-1:23 +chr21 10406809 . tttgtttgtttg . . . END=10406820;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:3,3:3-3,3-3:63,64,0,6:3,63:2,6:860.09:318.314,73.8073:0,0:-1,-1,-1:6 0/0:117:1:3,3:3-3,3-3:52,60,0,5:3,52:2,5:771.38:301.344,62.7839:0,0:-1,-1,-1:6 0/0:118:0.938584:3,3:2-3,2-3:59,56,0,3:2,11|3,48:2,3:791.706:305.271,63.0724:0.45695,0.45695:-1,-1,-1:6 +chr21 10407459 . ataataataata . . . END=10407470;RU=ata;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:4,4:4-4,4-4:65,66,0,2:4,65:3,2:859.453:318.314,73.8073:0,0:-1,-1,-1:8 0/0:93:1:4,4:4-4,4-4:46,45,0,2:4,46:3,2:593.12:301.344,62.7839:0,0:-1,-1,-1:8 0/0:138:1:4,4:4-4,4-4:69,67,0,2:4,69:3,2:897.28:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10417085 . tatatatatatatata tatatatata . . END=10417100;RU=ta;PERIOD=2;REF=8;GRID=2,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:98:1:5,8:5-5,8-8:50,43,0,3:5,12|8,38:5,2|6,1:636.14:318.314,73.8073:0.29703,0:-1,-1,-1:13 1/0:35:1:5,8:5-5,8-8:29,4,0,2:5,14|8,15:4,1|7,1:195.201:301.344,62.7839:0,0:-1,-1,-1:13 1/0:66:1:5,8:5-5,8-8:45,21,0,0:5,27|8,18:NULL:400.11:305.271,63.0724:0,0:-1,-1,-1:13 +chr21 10418210 . aataaataaata . . . END=10418221;RU=aata;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:150:1:3,3:3-3,3-3:85,54,0,11:3,85:2,11:916.753:318.314,73.8073:0,0:-1,-1,-1:6 0/0:150:1:3,3:3-3,3-3:95,42,0,13:3,95:2,13:858.249:301.344,62.7839:0,0:-1,-1,-1:6 0/0:128:1:3,3:3-3,3-3:60,58,0,10:3,60:2,10:821.22:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10422555 . caaaacaaaacaaaacaaaa . . . END=10422574;RU=caaaa;PERIOD=5;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:155:1:4,4:4-4,4-4:87,51,0,17:4,87:3,17:938.671:318.314,73.8073:0,0:-1,-1,-1:8 0/0:174:1:4,4:4-4,4-4:84,63,0,27:4,84:2,2|3,25:1100.29:301.344,62.7839:0,0:-1,-1,-1:8 0/0:153:1:4,4:4-4,4-4:74,56,0,23:4,74:3,23:962.892:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10427016 . ttgttgttgttg . . . END=10427027;RU=ttg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:1:4,4:4-4,4-4:65,46,0,6:4,65:3,6:724.186:318.314,73.8073:0,0:-1,-1,-1:8 0/0:97:1:4,4:4-4,4-4:47,43,0,7:4,47:3,7:622.796:301.344,62.7839:0,0:-1,-1,-1:8 0/0:96:1:4,4:4-4,4-4:50,44,0,2:4,50:3,2:622.051:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10427527 . tctttctttctt . . . END=10427538;RU=tctt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:71,75,0,10:3,71:2,10:1026.66:318.314,73.8073:0,0:-1,-1,-1:6 0/0:142:1:3,3:3-3,3-3:77,59,0,6:3,77:2,6:881.271:301.344,62.7839:0,0:-1,-1,-1:6 0/0:137:1:3,3:3-3,3-3:66,60,0,11:3,66:2,11:883.475:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10434294 . ttgttgttgttg . . . END=10434305;RU=ttg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:182:1:4,4:4-4,4-4:89,84,0,9:4,89:3,9:1182.04:318.314,73.8073:0,0:-1,-1,-1:8 0/0:175:1:4,4:4-4,4-4:96,71,0,8:4,96:3,8:1073.47:301.344,62.7839:0,0:-1,-1,-1:8 0/0:198:1:4,4:4-4,4-4:86,100,0,12:4,86:3,12:1305.32:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10435828 . gtgtgtgtgtgt . . . END=10435839;RU=gt;PERIOD=2;REF=6;GRID=2,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:144:1:6,6:6-6,6-6:86,51,0,6:6,86:4,1|5,5:866.522:318.314,73.8073:0,0:-1,-1,-1:12 0/0:140:1:6,6:6-6,6-6:79,51,0,9:6,79:4,2|5,7:846.452:301.344,62.7839:0,0:-1,-1,-1:12 0/0:162:1:6,6:6-6,6-6:85,64,0,13:6,85:4,3|5,10:1014.82:305.271,63.0724:0,0:-1,-1,-1:12 +chr21 10440461 . tatttatttatt . . . END=10440472;RU=tatt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:153:1:3,3:3-3,3-3:98,50,0,5:3,98:2,5:881.696:318.314,73.8073:0,0:-1,-1,-1:6 0/0:107:1:3,3:3-3,3-3:75,28,0,4:3,75:2,4:592.54:301.344,62.7839:0,0:-1,-1,-1:6 0/0:149:1:3,3:3-3,3-3:79,57,0,13:3,79:2,13:923.071:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10442046 . aaagaaag . . . END=10442053;RU=aaag;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:2,2:2-2,2-2:68,78,0,0:2,68:NULL:955.584:318.314,73.8073:0,0:-1,-1,-1:4 0/0:113:1:2,2:2-2,2-2:64,49,0,0:2,64:NULL:696.857:301.344,62.7839:0,0:-1,-1,-1:4 0/0:122:1:2,2:2-2,2-2:55,67,0,0:2,55:NULL:809.477:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10444705 . ttcagttcag . . . END=10444714;RU=ttcag;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:148:1:2,2:2-2,2-2:68,80,0,0:2,68:NULL:974.228:318.314,73.8073:0,0:-1,-1,-1:4 0/0:121:1:2,2:2-2,2-2:56,65,0,0:2,56:NULL:780.631:301.344,62.7839:0,0:-1,-1,-1:4 0/0:133:1:2,2:2-2,2-2:60,73,0,0:2,60:NULL:892.279:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10445632 . taaattaaat . . . END=10445641;RU=taaat;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:109:1:2,2:2-2,2-2:52,57,0,0:2,52:NULL:700.607:318.314,73.8073:0,0:-1,-1,-1:4 0/0:83:1:2,2:2-2,2-2:47,36,0,0:2,47:NULL:505.642:301.344,62.7839:0,0:-1,-1,-1:4 0/0:122:1:2,2:2-2,2-2:58,64,0,0:2,58:NULL:786.663:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10448493 . tgttttgttttgttt . . . END=10448507;RU=tgttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:86,62,0,8:3,86:2,8:958.223:318.314,73.8073:0,0:-1,-1,-1:6 0/0:135:1:3,3:3-3,3-3:71,56,0,8:3,71:2,8:840.457:301.344,62.7839:0,0:-1,-1,-1:6 0/0:164:1:3,3:3-3,3-3:84,68,0,12:3,84:2,12:1024.75:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10449854 . ttatttatttatttat . . . END=10449869;RU=ttat;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:162:1:4,4:4-4,4-4:84,51,0,27:4,84:2,4|3,23:995.535:318.314,73.8073:0,0:-1,-1,-1:8 0/0:121:1:4,4:4-4,4-4:67,34,0,20:4,67:2,4|3,16:733.982:301.344,62.7839:0,0:-1,-1,-1:8 0/0:152:1:4,4:4-4,4-4:75,59,0,18:4,75:2,4|3,14:963.725:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10458423 . cttccttccttc . . . END=10458434;RU=cttc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:168:1:3,3:3-3,3-3:81,78,0,9:3,81:2,9:1077.66:318.314,73.8073:0,0:-1,-1,-1:6 0/0:147:1:3,3:3-3,3-3:75,63,0,9:3,75:2,9:927.65:301.344,62.7839:0,0:-1,-1,-1:6 0/0:176:1:3,3:3-3,3-3:83,79,0,14:3,83:2,14:1137.01:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10460929 . tttgtttgtttg . . . END=10460940;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:78,68,0,10:3,78:2,10:989.654:318.314,73.8073:0,0:-1,-1,-1:6 0/0:130:1:3,3:3-3,3-3:68,54,0,8:3,68:2,8:811.064:301.344,62.7839:0,0:-1,-1,-1:6 0/0:145:1:3,3:3-3,3-3:70,68,0,7:3,70:2,7:935.761:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10470497 . caaacaaacaaacaaa . . . END=10470512;RU=caaa;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:123:1:4,4:4-4,4-4:59,49,0,15:4,59:2,1|3,14:781.679:318.314,73.8073:0,0:-1,-1,-1:8 0/0:126:1:4,4:4-4,4-4:70,42,0,14:4,70:2,1|3,13:771.117:301.344,62.7839:0,0:-1,-1,-1:8 0/0:124:1:4,4:4-4,4-4:80,32,0,12:4,80:2,1|3,10|4,1:708.454:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10473581 . aaacaaaacaaaaca . . . END=10473595;RU=aaaca;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:75,72,0,13:3,75:2,13:1044.94:318.314,73.8073:0,0:-1,-1,-1:6 0/0:153:1:3,3:3-3,3-3:77,68,0,8:3,77:2,8:967.466:301.344,62.7839:0,0:-1,-1,-1:6 0/0:165:1:3,3:3-3,3-3:81,70,0,14:3,81:2,14:1044.01:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10475143 . ttgtttgtttgtttgt . . . END=10475158;RU=ttgt;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:115:1:4,4:4-4,4-4:67,34,0,14:4,67:3,14:685.204:318.314,73.8073:0,0:-1,-1,-1:8 0/0:91:1:4,4:4-4,4-4:55,26,0,10:4,55:2,1|3,9:525.928:301.344,62.7839:0,0:-1,-1,-1:8 0/0:103:1:4,4:4-4,4-4:76,20,0,7:4,76:3,7:547.261:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10479831 . ttttgttttg . . . END=10479840;RU=ttttg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:111:1:2,2:2-2,2-2:48,63,0,0:2,48:NULL:749.28:318.314,73.8073:0,0:-1,-1,-1:4 0/0:92:1:2,2:2-2,2-2:54,38,0,0:2,54:NULL:555.428:301.344,62.7839:0,0:-1,-1,-1:4 0/0:111:1:2,2:2-2,2-2:65,46,0,0:2,65:NULL:672.721:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10480064 . ccttccttcctt . . . END=10480075;RU=cctt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:145:1:3,3:3-3,3-3:72,65,0,8:3,72:2,8:929.915:318.314,73.8073:0,0:-1,-1,-1:6 0/0:149:1:3,3:3-3,3-3:82,58,0,9:3,82:2,9:911.704:301.344,62.7839:0,0:-1,-1,-1:6 0/0:150:1:3,3:3-3,3-3:87,54,0,9:3,87:2,9:907.354:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10482173 . acaaacaaacaa . . . END=10482184;RU=acaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:43,74,0,11:3,43:2,11:892.919:318.314,73.8073:0,0:-1,-1,-1:6 0/0:110:1:3,3:3-3,3-3:29,75,0,6:3,29:2,6:794.12:301.344,62.7839:0,0:-1,-1,-1:6 0/0:99:1:3,3:3-3,3-3:29,63,0,7:3,29:2,7:720.023:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10482812 . aaaataaaataaaat . . . END=10482826;RU=aaaat;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:140:1:3,3:3-3,3-3:66,52,0,22:3,66:2,22:881.695:318.314,73.8073:0,0:-1,-1,-1:6 0/0:133:1:3,3:3-3,3-3:53,65,0,15:3,53:2,15:891.862:301.344,62.7839:0,0:-1,-1,-1:6 0/0:122:1:3,3:3-3,3-3:66,43,0,13:3,66:2,13:739.223:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10485199 . tctgttctgttctgt . . . END=10485213;RU=tctgt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:164:1:3,3:3-3,3-3:65,78,0,21:3,65:2,21:1101.4:318.314,73.8073:0,0:-1,-1,-1:6 0/0:131:1:3,3:3-3,3-3:59,56,0,16:3,59:2,16:847.745:301.344,62.7839:0,0:-1,-1,-1:6 0/0:153:1:3,3:3-3,3-3:71,73,0,9:3,71:2,9:994.559:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10492408 . aattaatt . . . END=10492415;RU=aatt;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:54,80,0,0:2,54:NULL:919.464:318.314,73.8073:0,0:-1,-1,-1:4 0/0:144:1:2,2:2-2,2-2:71,73,0,0:2,71:NULL:924.794:301.344,62.7839:0,0:-1,-1,-1:4 0/0:140:1:2,2:2-2,2-2:56,84,0,0:2,56:NULL:948.308:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10495506 . tctctctctctc . . . END=10495517;RU=tc;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:163:1:6,6:6-6,6-6:85,65,0,12:6,85:4,3|5,9:1014.31:318.314,73.8073:0,0:-1,-1,-1:12 0/0:173:1:6,6:6-6,6-6:92,66,0,15:6,92:4,4|5,11:1075.47:301.344,62.7839:0,0:-1,-1,-1:12 0/0:146:1:6,6:6-6,6-6:78,60,0,8:6,78:4,5|5,3:917.184:305.271,63.0724:0,0:-1,-1,-1:12 +chr21 10498831 . aaaataaaataaaataaaat aaaataaaataaaat . . END=10498850;RU=aaaat;PERIOD=5;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:165:1:4,4:4-4,4-4:76,65,0,24:4,76:2,6|3,18:1080.09:318.314,73.8073:0,0:-1,-1,-1:8 0/0:171:1:4,4:4-4,4-4:77,55,0,39:4,77:2,6|3,33:1085.95:301.344,62.7839:0,0:-1,-1,-1:8 1/0:195:0.999875:3,4:3-4,4-4:90,76,0,29:3,21|4,69:2,8|3,21:1306.14:305.271,63.0724:0.431574,0:-1,-1,-1:7 +chr21 10499541 . aaataaataaataaataaataaataaat aaataaataaataaataaataaataaataaataaat . . END=10499568;RU=aaat;PERIOD=4;REF=7;GRID=2,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,9.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:166:0.999981:7,9:7-7,9-9:57,49,0,58:7,52|9,5:2,2|3,11|4,11|5,9|6,19|8,6:1149.88:318.314,73.8073:0,0.19802:-1,-1,-1:16 0/1:125:1:7,9:7-7,9-9:45,38,0,42:7,32|9,13:3,10|4,6|5,6|6,13|7,1|8,6:873.908:301.344,62.7839:0,0:-1,-1,-1:16 0/0:167:0.998953:7,7:7-8,7-8:60,46,0,61:7,49|8,11:2,1|3,9|4,9|5,15|6,20|7,7:1148.24:305.271,63.0724:0.40582,0.40582:-1,-1,-1:14 +chr21 10501789 . aaacaaaaca . . . END=10501798;RU=aaaca;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:70:1:2,2:2-2,2-2:24,46,0,0:2,24:NULL:505.731:318.314,73.8073:0,0:-1,-1,-1:4 0/0:47:0.994639:2,2:2-2,2-2:11,36,0,0:2,11:NULL:351.341:301.344,62.7839:0,0:-1,-1,-1:4 0/0:87:1:2,2:2-2,2-2:33,54,0,0:2,33:NULL:603.638:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10503449 . atatatatatat . . . END=10503460;RU=at;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:1:6,6:6-6,6-6:58,59,0,0:6,58:NULL:756.286:318.314,73.8073:0,0:-1,-1,-1:12 0/0:91:1:6,6:6-6,6-6:55,34,0,2:6,55:4,1|5,1:534.908:301.344,62.7839:0,0:-1,-1,-1:12 0/0:126:1:6,6:6-6,6-6:65,60,0,0:6,65:NULL:792.081:305.271,63.0724:0,0:-1,-1,-1:12 +chr21 10503972 . ttttattttatttta . . . END=10503986;RU=tttta;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:3,3:3-3,3-3:62,68,0,16:3,62:2,16:958.782:318.314,73.8073:0,0:-1,-1,-1:6 0/0:136:1:3,3:3-3,3-3:74,51,0,11:3,74:2,11:839.552:301.344,62.7839:0,0:-1,-1,-1:6 0/0:178:1:3,3:3-3,3-3:90,65,0,23:3,90:2,23:1111.57:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10505871 . aacaacaacaacaac . . . END=10505885;RU=aac;PERIOD=3;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:157:1:5,5:5-5,5-5:59,90,0,8:5,59:4,8:1078.25:318.314,73.8073:0,0:-1,-1,-1:10 0/0:128:1:5,5:5-5,5-5:63,52,0,13:5,63:3,1|4,12:822.382:301.344,62.7839:0,0:-1,-1,-1:10 0/0:166:1:5,5:5-5,5-5:83,65,0,18:5,83:3,6|4,12:1051.26:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10508456 . tttctttc . . . END=10508463;RU=tttc;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:151:1:2,2:2-2,2-2:81,70,0,0:2,81:NULL:947.961:318.314,73.8073:0,0:-1,-1,-1:4 0/0:135:1:2,2:2-2,2-2:82,53,0,0:2,82:NULL:799.887:301.344,62.7839:0,0:-1,-1,-1:4 0/0:143:1:2,2:2-2,2-2:70,73,0,0:2,70:NULL:919.631:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10509432 . atttatttattt . . . END=10509443;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:149:1:3,3:3-3,3-3:71,75,0,3:3,71:2,3:968.151:318.314,73.8073:0,0:-1,-1,-1:6 0/0:139:1:3,3:3-3,3-3:87,47,0,5:3,87:2,5:818.142:301.344,62.7839:0,0:-1,-1,-1:6 0/0:140:1:3,3:3-3,3-3:71,64,0,5:3,71:2,5:880.527:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10510615 . gaatgaatgaat . . . END=10510626;RU=gaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:112:1:3,3:3-3,3-3:42,66,0,4:3,42:2,4:776.528:318.314,73.8073:0,0:-1,-1,-1:6 0/0:95:1:3,3:3-3,3-3:40,47,0,8:3,40:2,8:640.19:301.344,62.7839:0,0:-1,-1,-1:6 0/0:87:1:3,3:3-3,3-3:35,45,0,7:3,35:2,7:594.183:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10511750 . acacacacacac . . . END=10511761;RU=ac;PERIOD=2;REF=6;GRID=2,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:151:1:6,6:6-7,6-7:79,62,0,9:6,67|7,12:5,9:973.434:318.314,73.8073:0.270063,0.270063:-1,-1,-1:12 0/0:139:1:6,6:6-7,6-7:66,57,0,16:6,57|7,9:4,1|5,12|6,3:924.858:301.344,62.7839:0.253975,0.253975:-1,-1,-1:12 0/0:145:1:6,6:6-6,6-6:77,56,0,12:6,73|7,4:4,1|5,9|6,2:906.981:305.271,63.0724:0,0:-1,-1,-1:12 +chr21 10514420 . aatgaatgaatg . . . END=10514431;RU=aatg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:178:1:3,3:3-3,3-3:93,75,0,10:3,93:2,10:1119.79:318.314,73.8073:0,0:-1,-1,-1:6 0/0:162:1:3,3:3-3,3-3:79,76,0,7:3,79:2,7:1033.56:301.344,62.7839:0,0:-1,-1,-1:6 0/0:180:1:3,3:3-3,3-3:86,82,0,12:3,86:2,12:1164.33:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10514754 . atatatatatatatat atatatatatatatatat . . END=10514769;RU=at;PERIOD=2;REF=8;GRID=4,16;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,9.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:0.999593:8,8:8-9,8-9:68,71,0,6:7,2|8,54|9,12:4,1|5,1|6,2|7,1|8,1:1002.8:318.314,73.8073:0.615775,0.615775:-1,-1,-1:16 0/0:103:0.996321:8,8:8-9,8-9:46,51,0,5:8,38|9,8:5,3|6,1|7,1:693.143:301.344,62.7839:0.382696,0.382696:-1,-1,-1:16 0/1:126:1:8,9:8-8,9-9:52,70,0,4:8,21|9,31:4,2|5,1|7,1:892.926:305.271,63.0724:0,0:-1,-1,-1:17 +chr21 10516263 . tgtttgtttgtt . . . END=10516274;RU=tgtt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:195:1:3,3:3-3,3-3:95,87,0,13:3,95:2,13:1250.51:318.314,73.8073:0,0:-1,-1,-1:6 0/0:172:1:3,3:3-3,3-3:93,68,0,11:3,93:2,11:1061.16:301.344,62.7839:0,0:-1,-1,-1:6 0/0:183:1:3,3:3-3,3-3:99,70,0,14:3,99:2,14:1122.11:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10516555 . taataataataa . . . END=10516566;RU=taa;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:171:1:4,4:4-4,4-4:108,57,0,6:4,108:3,6:990.24:318.314,73.8073:0,0:-1,-1,-1:8 0/0:101:1:4,4:4-4,4-4:76,18,0,7:4,76:3,7:527.508:301.344,62.7839:0,0:-1,-1,-1:8 0/0:161:1:4,4:4-4,4-4:108,46,0,7:4,108:3,7:899.092:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10518861 . atatatatatatatatat atatatatatatatatatatat . . END=10518878;RU=at;PERIOD=2;REF=9;GRID=4,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=9.0,11.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:78:0.834008:9,11:9-9,9-11:26,48,0,4:9,16|10,5|11,5:4,2|7,2:579.731:318.314,73.8073:0,0.572719:-1,-1,-1:20 0/1:34:0.999981:9,11:7-9,11-11:11,21,0,0:9,4|11,7:NULL:232.96:301.344,62.7839:0.580708,0.39604:-1,-1,-1:20 0/1:63:1:9,11:9-9,11-11:26,35,0,2:9,10|10,3|11,13:5,1|8,1:452.584:305.271,63.0724:0,0.0990099:-1,-1,-1:20 +chr21 10524017 . ataataata . . . END=10524025;RU=ata;PERIOD=3;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:105:1:3,3:3-3,3-3:45,60,0,0:3,45:NULL:705.446:318.314,73.8073:0,0:-1,-1,-1:6 0/0:45:1:3,3:3-3,3-3:40,5,0,0:3,40:NULL:210.932:301.344,62.7839:0,0:-1,-1,-1:6 0/0:92:1:3,3:3-3,3-3:62,30,0,0:3,62:NULL:518.263:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10525445 . acagacagacag . . . END=10525456;RU=acag;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:149:1:3,3:3-3,3-3:86,51,0,12:3,86:2,12:890.756:318.314,73.8073:0,0:-1,-1,-1:6 0/0:148:1:3,3:3-3,3-3:86,57,0,5:3,86:2,5:888.273:301.344,62.7839:0,0:-1,-1,-1:6 0/0:127:1:3,3:3-3,3-3:73,49,0,5:3,73:2,5:756.575:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10527237 . ataataataataata . . . END=10527251;RU=ata;PERIOD=3;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:177:1:5,5:5-5,5-5:91,63,0,23:5,91:3,2|4,21:1096.15:318.314,73.8073:0,0:-1,-1,-1:10 0/0:148:1:5,5:5-5,5-5:91,42,0,15:5,91:3,3|4,12:854.78:301.344,62.7839:0,0:-1,-1,-1:10 0/0:141:1:5,5:5-5,5-5:82,41,0,18:5,82:3,2|4,16:844.463:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10529203 . tatatatatata tatatatata . . END=10529214;RU=ta;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:101:1:5,6:5-5,6-6:42,58,0,1:5,18|6,24:4,1:715.206:318.314,73.8073:0,0:-1,-1,-1:11 1/0:93:0.999999:5,6:5-5,5-6:40,51,0,2:5,26|6,14:4,2:649.337:301.344,62.7839:0,0.169767:-1,-1,-1:11 1/0:98:0.999999:5,6:5-5,5-6:31,63,0,4:5,19|6,12:4,4:730.14:305.271,63.0724:0,0.169767:-1,-1,-1:11 +chr21 10538484 . aattaaatta . . . END=10538493;RU=aatta;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:138:1:2,2:2-2,2-2:67,71,0,0:2,67:NULL:886.019:318.314,73.8073:0,0:-1,-1,-1:4 0/0:106:1:2,2:2-2,2-2:55,51,0,0:2,55:NULL:670.06:301.344,62.7839:0,0:-1,-1,-1:4 0/0:127:1:2,2:2-2,2-2:70,57,0,0:2,70:NULL:769.66:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10540729 . ataaataaataa . . . END=10540740;RU=ataa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:174:1:3,3:3-3,3-3:88,72,0,14:3,88:2,14:1098.24:318.314,73.8073:0,0:-1,-1,-1:6 0/0:116:1:3,3:3-3,3-3:73,32,0,11:3,73:2,11:665.295:301.344,62.7839:0,0:-1,-1,-1:6 0/0:199:1:3,3:3-3,3-3:102,75,0,22:3,102:2,22:1237.63:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10542121 . atttatttattt . . . END=10542132;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:103:1:3,3:3-3,3-3:46,52,0,5:3,46:2,5:682.963:318.314,73.8073:0,0:-1,-1,-1:6 0/0:103:1:3,3:3-3,3-3:46,48,0,9:3,46:2,9:674.393:301.344,62.7839:0,0:-1,-1,-1:6 0/0:124:1:3,3:3-3,3-3:59,58,0,7:3,59:2,7:795.157:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10542653 . caaacaaacaaa . . . END=10542664;RU=caaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:82,64,0,14:3,82:2,14:992.459:318.314,73.8073:0,0:-1,-1,-1:6 0/0:157:1:3,3:3-3,3-3:69,74,0,14:3,69:2,14:1023.18:301.344,62.7839:0,0:-1,-1,-1:6 0/0:154:1:3,3:3-3,3-3:75,67,0,12:3,75:2,12:983.783:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10545062 . atacatacatacatacatacatac atacatacatacatacatac . . END=10545085;RU=atac;PERIOD=4;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:175:1:5,6:5-5,6-6:70,69,0,36:5,41|6,29:2,1|3,12|4,17|5,6:1208.25:318.314,73.8073:0,0:-1,-1,-1:11 1/1:180:0.999988:5,5:5-6,5-6:71,72,0,37:5,59|6,12:2,3|3,11|4,19|5,4:1223.43:301.344,62.7839:0.270063,0.270063:-1,-1,-1:10 1/1:164:1:5,5:5-5,5-5:75,61,0,28:5,64|6,11:2,1|3,6|4,17|5,4:1079.83:305.271,63.0724:0.139319,0.139319:-1,-1,-1:10 +chr21 10546607 . aattaattaatt . . . END=10546618;RU=aatt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:54,74,0,0:3,54:NULL:864.97:318.314,73.8073:0,0:-1,-1,-1:6 0/0:105:1:3,3:3-3,3-3:62,43,0,0:3,62:NULL:637.805:301.344,62.7839:0,0:-1,-1,-1:6 0/0:121:1:3,3:3-3,3-3:55,64,0,2:3,55:2,2:795.115:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10547387 . acacacacacacacacacacacacacacacacacac acacacacacacacacacacacacacacacac,acacacacacacacacacacacacacacacacacacacacacac . . END=10547422;RU=ac;PERIOD=2;REF=18;GRID=11,26;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=16.0,22.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:178:1:16,18:16-19,18-19:45,93,0,39:16,11|17,2|18,22|19,10:4,1|5,3|6,4|7,2|8,1|9,3|10,3|11,4|12,3|13,3|14,3|15,5|17,2|18,2:1378.5:318.314,73.8073:0.896026,0.21692:-1,-1,-1:34 1/0:113:0.999649:16,18:16-16,18-19:37,53,0,21:16,14|17,3|18,11|19,9:4,1|6,1|7,3|8,2|9,3|10,2|11,1|12,1|13,1|14,3|15,2|18,1:851.455:301.344,62.7839:0,0.374147:-1,-1,-1:34 0/2:148:0.815754:18,22:18-18,21-23:33,80,0,33:17,2|18,26|21,2|22,3:5,4|6,4|7,2|8,2|9,2|10,1|11,4|12,2|13,3|14,1|15,1|16,3|17,3|19,1:1142.82:305.271,63.0724:0,0.713971:-1,-1,-1:40 +chr21 10551531 . caaacaaacaaa . . . END=10551542;RU=caaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:69,48,0,11:3,69:2,11:778.445:318.314,73.8073:0,0:-1,-1,-1:6 0/0:137:1:3,3:3-3,3-3:76,52,0,9:3,76:2,9:829.541:301.344,62.7839:0,0:-1,-1,-1:6 0/0:166:1:3,3:3-3,3-3:89,58,0,19:3,89:2,19:1008.4:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10552733 . tctatctatcta . . . END=10552744;RU=tcta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:136:1:3,3:3-3,3-3:67,56,0,13:3,67:2,13:864.179:318.314,73.8073:0,0:-1,-1,-1:6 0/0:132:1:3,3:3-3,3-3:76,41,0,15:3,76:2,15:778.435:301.344,62.7839:0,0:-1,-1,-1:6 0/0:145:1:3,3:3-3,3-3:84,54,0,7:3,84:2,7:863.56:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10565738 . ttttgttttgttttgttttg ttttgttttgttttgttttgttttg . . END=10565757;RU=ttttg;PERIOD=5;REF=4;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:139:0.976685:4,5:4-4,4-5:38,78,0,23:4,38:2,5|3,13|4,2|5,3:1043.39:318.314,73.8073:0,0.345543:-1,-1,-1:9 0/1:142:0.974666:4,5:4-4,4-5:36,75,0,30:4,36:2,12|3,10|4,6|5,2:1047.54:301.344,62.7839:0,0.484441:-1,-1,-1:9 0/1:160:0.967178:4,5:4-4,4-5:44,87,0,29:4,44:2,5|3,13|4,9|5,2:1172.35:305.271,63.0724:0,0.499779:-1,-1,-1:9 +chr21 10568605 . aaataaaataaaata . . . END=10568619;RU=aaata;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:135:1:3,3:3-3,3-3:71,45,0,19:3,71:2,19:831.199:318.314,73.8073:0,0:-1,-1,-1:6 0/0:120:1:3,3:3-3,3-3:60,52,0,8:3,60:2,8:761.502:301.344,62.7839:0,0:-1,-1,-1:6 0/0:167:1:3,3:3-3,3-3:84,66,0,17:3,84:2,17:1046.29:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10568730 . tgtatgtatgta . . . END=10568741;RU=tgta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:147:1:3,3:3-3,3-3:76,59,0,12:3,76:2,12:915.437:318.314,73.8073:0,0:-1,-1,-1:6 0/0:129:1:3,3:3-3,3-3:65,60,0,4:3,65:2,4:815.367:301.344,62.7839:0,0:-1,-1,-1:6 0/0:188:1:3,3:3-3,3-3:94,79,0,15:3,94:2,15:1180.23:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10572046 . catacatacata . . . END=10572057;RU=cata;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:154:1:3,3:3-3,3-3:92,55,0,7:3,92:2,7:924.825:318.314,73.8073:0,0:-1,-1,-1:6 0/0:118:1:3,3:3-3,3-3:74,39,0,5:3,74:2,5:679.8:301.344,62.7839:0,0:-1,-1,-1:6 0/0:122:1:3,3:3-3,3-3:77,44,0,1:3,77:2,1:706.924:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10572909 . atttatttattt . . . END=10572920;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:3,3:3-3,3-3:75,61,0,10:3,75:2,10:922.17:318.314,73.8073:0,0:-1,-1,-1:6 0/0:151:1:3,3:3-3,3-3:82,56,0,13:3,82:2,13:917.761:301.344,62.7839:0,0:-1,-1,-1:6 0/0:140:1:3,3:3-3,3-3:72,51,0,17:3,72:2,17:867.464:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10573618 . tttgtttgtttgtttg tttgtttgtttg . . END=10573633;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:172:0.820382:4,4:3-4,3-4:87,64,0,21:3,17|4,70:2,4|3,17:1144.01:318.314,73.8073:0.489073,0.489073:-1,-1,-1:8 0/0:150:1:4,4:4-4,4-4:82,52,0,16:4,82:2,4|3,12:912.408:301.344,62.7839:0,0:-1,-1,-1:8 1/0:146:1:3,4:3-3,4-4:78,52,0,16:3,39|4,39:2,9|3,7:951.595:305.271,63.0724:0,0:-1,-1,-1:7 +chr21 10574632 . ataaataaataa . . . END=10574643;RU=ataa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:202:1:3,3:3-3,3-3:117,72,0,13:3,117:2,13:1214.83:318.314,73.8073:0,0:-1,-1,-1:6 0/0:169:1:3,3:3-3,3-3:99,52,0,18:3,99:2,18:1002.73:301.344,62.7839:0,0:-1,-1,-1:6 0/0:191:1:3,3:3-3,3-3:111,65,0,15:3,111:2,15:1137.76:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10588972 . gagagagagagagagagagagagaga gagagagagagagagagagagaga . . END=10588997;RU=ga;PERIOD=2;REF=13;GRID=5,17;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=12.0,13.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:169:0.99902:12,13:11-12,11-13:67,67,0,35:11,18|12,24|13,25:4,2|5,3|6,5|7,2|8,3|9,5|10,7|11,4|12,4:1250.37:318.314,73.8073:0.431574,0.647134:-1,-1,-1:25 1/0:148:0.999999:12,13:11-12,11-13:66,50,0,32:11,16|12,29|13,21:4,2|5,6|6,3|7,3|8,4|9,3|10,4|11,5|12,2:1072.64:301.344,62.7839:0.298675,0.89526:-1,-1,-1:25 1/0:148:0.999879:12,13:9-12,9-13:60,54,0,33:9,7|11,4|12,15|13,34:4,1|5,3|6,3|7,1|8,3|9,6|10,7|11,6|12,2|14,1:1113.18:305.271,63.0724:1.42512,0.679066:-1,-1,-1:25 +chr21 10594833 . aaaataaaat . . . END=10594842;RU=aaaat;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:121:1:2,2:2-2,2-2:62,59,0,0:2,62:NULL:765.398:318.314,73.8073:0,0:-1,-1,-1:4 0/0:112:1:2,2:2-2,2-2:56,56,0,0:2,56:NULL:715.048:301.344,62.7839:0,0:-1,-1,-1:4 0/0:143:1:2,2:2-2,2-2:73,70,0,0:2,73:NULL:902.064:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10599597 . cgggcgggcggg . . . END=10599608;RU=cggg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:137:1:3,3:3-3,3-3:69,63,0,5:3,69:2,5:870.885:318.314,73.8073:0,0:-1,-1,-1:6 0/0:128:1:3,3:3-3,3-3:62,62,0,4:3,62:2,4:829.072:301.344,62.7839:0,0:-1,-1,-1:6 0/0:124:1:3,3:3-3,3-3:64,51,0,9:3,64:2,9:772.029:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10616968 . aagagaagag . . . END=10616977;RU=aagag;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:2,2:2-2,2-2:65,68,0,0:2,65:NULL:852.421:318.314,73.8073:0,0:-1,-1,-1:4 0/0:140:1:2,2:2-2,2-2:76,64,0,0:2,76:NULL:875.44:301.344,62.7839:0,0:-1,-1,-1:4 0/0:140:1:2,2:2-2,2-2:71,69,0,0:2,71:NULL:890.065:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10621527 . tatgtatgtatg . . . END=10621538;RU=tatg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:177:1:3,3:3-3,3-3:93,69,0,15:3,93:2,15:1100.56:318.314,73.8073:0,0:-1,-1,-1:6 0/0:177:1:3,3:3-3,3-3:97,62,0,18:3,97:2,18:1081.41:301.344,62.7839:0,0:-1,-1,-1:6 0/0:185:1:3,3:3-3,3-3:98,72,0,15:3,98:2,15:1149.88:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10624372 . ggaggaggagga . . . END=10624383;RU=gga;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:155:1:4,4:4-4,4-4:66,75,0,14:4,66:3,14:1030.78:318.314,73.8073:0,0:-1,-1,-1:8 0/0:147:1:4,4:4-4,4-4:81,54,0,11:4,81:3,11:895.471:301.344,62.7839:0,0:-1,-1,-1:8 0/0:131:1:4,4:4-4,4-4:74,51,0,6:4,74:3,6:803.622:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10627498 . aataaataaataaataaata aataaataaataaataaataaata . . END=10627517;RU=aata;PERIOD=4;REF=5;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:159:1:5,6:5-5,6-6:51,64,0,44:5,29|6,22:2,2|3,6|4,21|5,15:1147.99:318.314,73.8073:0,0:-1,-1,-1:11 0/1:128:1:5,6:5-5,6-6:55,39,0,34:5,28|6,27:2,2|3,9|4,13|5,10:864.747:301.344,62.7839:0,0:-1,-1,-1:11 0/0:137:1:5,5:5-5,5-5:59,55,0,23:5,59:2,2|3,3|4,18:906.453:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10629672 . tttctttc . . . END=10629679;RU=tttc;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:2,2:2-2,2-2:36,57,0,0:2,36:NULL:649.529:318.314,73.8073:0,0:-1,-1,-1:4 0/0:97:1:2,2:2-2,2-2:47,50,0,0:2,47:NULL:630.153:301.344,62.7839:0,0:-1,-1,-1:4 0/0:113:1:2,2:2-2,2-2:60,53,0,0:2,60:NULL:715.138:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10632405 . actcactcactc . . . END=10632416;RU=actc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:60,66,0,2:3,60:2,2:837.723:318.314,73.8073:0,0:-1,-1,-1:6 0/0:128:1:3,3:3-3,3-3:69,52,0,7:3,69:2,7:790.916:301.344,62.7839:0,0:-1,-1,-1:6 0/0:160:1:3,3:3-3,3-3:80,66,0,14:3,80:2,14:1014.21:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10634228 . aattaattaattaattaattaattaatt aattaattaattaattaattaatt,aattaattaattaattaattaattaattaatt . . END=10634255;RU=aatt;PERIOD=4;REF=7;GRID=3,11;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:66:0.896212:6,7:6-7,7-7:27,34,0,5:6,6|7,19|8,2:2,1|3,1|4,3:467.138:318.314,73.8073:0.495841,0:-1,-1,-1:13 0/2:29:0.915312:7,8:7-7,7-8:20,4,0,5:7,15|8,5:3,2|4,2|5,1:172.066:301.344,62.7839:0,0.486863:-1,-1,-1:15 1/0:64:1:6,7:6-6,7-7:24,32,0,8:6,10|7,14:2,3|3,2|4,1|6,2:451.212:305.271,63.0724:0.139319,0:-1,-1,-1:13 +chr21 10635924 . tatatatatatata . . . END=10635937;RU=ta;PERIOD=2;REF=7;GRID=3,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:70:0.999927:7,7:7-7,7-7:24,43,0,2:7,22|8,2:6,2:494.042:318.314,73.8073:0.0990099,0.0990099:-1,-1,-1:14 0/0:59:1:7,7:7-7,7-7:28,29,0,2:7,28:4,1|7,1:383.415:301.344,62.7839:0,0:-1,-1,-1:14 0/0:112:1:7,7:7-12,7-12:51,57,0,2:6,2|7,49:6,2:726.962:305.271,63.0724:0.975134,0.975134:-1,-1,-1:14 +chr21 10639268 . ttttattttatttta . . . END=10639282;RU=tttta;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:142:1:3,3:3-3,3-3:75,48,0,19:3,75:2,19:877.735:318.314,73.8073:0,0:-1,-1,-1:6 0/0:131:1:3,3:3-3,3-3:67,50,0,14:3,67:2,14:817.003:301.344,62.7839:0,0:-1,-1,-1:6 0/0:150:1:3,3:3-3,3-3:76,51,0,23:3,76:2,22|3,1:932.576:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10861528 . tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg . . END=10861563;RU=tg;PERIOD=2;REF=18;GRID=1,29;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=18.0,26.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 3/3:42:0.0289169:26,26:18-28,18-28:0,29,0,13:NULL:5,1|7,1|8,1|11,1|14,1|15,1|17,2|18,1|23,2|24,1|26,1:351.913:318.314,73.8073:3.38628,3.38628:-1,-1,-1:52 1/2:25:0.032284:20,24:8-26,13-26:0,18,0,7:NULL:8,1|12,1|17,1|19,2|20,1|24,1:209.408:301.344,62.7839:4.62807,2.87217:-1,-1,-1:44 3/3:54:0.0581838:26,26:17-26,17-26:0,32,0,22:NULL:5,2|6,1|7,2|9,1|10,2|11,1|12,2|16,1|17,2|19,2|22,1|23,1|24,1|25,2|26,1:449.633:305.271,63.0724:2.67697,2.67697:-1,-1,-1:52 +chr21 10862116 . aaataaataaat . . . END=10862127;RU=aaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:94:1:3,3:3-3,3-3:53,34,0,7:3,53:2,7:565.871:318.314,73.8073:0,0:-1,-1,-1:6 0/0:64:1:3,3:3-3,3-3:43,16,0,5:3,43:2,5:357.338:301.344,62.7839:0,0:-1,-1,-1:6 0/0:128:1:3,3:3-3,3-3:74,41,0,13:3,74:2,13:767.981:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10868844 . tttatttattta . . . END=10868855;RU=ttta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:92:1:3,3:3-3,3-3:34,49,0,9:3,34:2,9:632.455:318.314,73.8073:0,0:-1,-1,-1:6 0/0:85:1:3,3:3-3,3-3:44,33,0,8:3,44:2,8:521.834:301.344,62.7839:0,0:-1,-1,-1:6 0/0:127:1:3,3:3-3,3-3:46,64,0,17:3,46:2,17:857.35:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10873878 . tttatttatttattta . . . END=10873893;RU=ttta;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:111:1:4,4:4-4,4-4:44,48,0,19:4,44:2,2|3,17:732.941:318.314,73.8073:0,0:-1,-1,-1:8 0/0:48:1:4,4:4-4,4-4:25,17,0,6:4,25:3,6:300.203:301.344,62.7839:0,0:-1,-1,-1:8 0/0:140:1:4,4:4-4,4-4:60,60,0,20:4,60:2,1|3,19:917.754:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10880831 . aggcaggcaggc . . . END=10880842;RU=aggc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:81:1:3,3:3-3,3-3:38,39,0,4:3,38:2,4:530.583:318.314,73.8073:0,0:-1,-1,-1:6 0/0:48:1:3,3:3-3,3-3:22,25,0,1:3,22:2,1:322.101:301.344,62.7839:0,0:-1,-1,-1:6 0/0:83:1:3,3:3-3,3-3:42,37,0,4:3,42:2,4:528.697:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10881968 . aaattaaattaaatt . . . END=10881982;RU=aaatt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:50:1:3,3:3-3,3-3:25,23,0,2:3,25:2,2:323.288:318.314,73.8073:0,0:-1,-1,-1:6 0/0:37:0.999987:3,3:3-3,3-3:19,17,0,1:3,19:2,1:230.931:301.344,62.7839:0,0:-1,-1,-1:6 0/0:84:1:3,3:3-3,3-3:31,48,0,5:3,31:2,5:591.639:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10882325 . atagatagatag . . . END=10882336;RU=atag;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:72:1:3,3:3-3,3-3:43,19,0,10:3,43:2,10:424.938:318.314,73.8073:0,0:-1,-1,-1:6 0/0:33:1.00001:3,3:3-3,3-3:21,9,0,3:3,21:2,3:191.423:301.344,62.7839:0,0:-1,-1,-1:6 0/0:102:1:3,3:3-3,3-3:64,26,0,12:3,64:2,12:583.255:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10888630 . gagaaagagaaa . . . END=10888641;RU=gagaaa;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:105:1:2,2:2-2,2-2:44,61,0,0:2,44:NULL:711.388:318.314,73.8073:0,0:-1,-1,-1:4 0/0:71:1:2,2:2-2,2-2:41,30,0,0:2,41:NULL:429.204:301.344,62.7839:0,0:-1,-1,-1:4 0/0:112:1:2,2:2-2,2-2:66,46,0,0:2,66:NULL:676.05:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10888705 . aggaggaggagg . . . END=10888716;RU=agg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:4,4:3-4,3-4:48,76,0,9:3,5|4,43:3,9:933.353:318.314,73.8073:0.169767,0.169767:-1,-1,-1:8 0/0:88:0.743006:4,4:3-4,3-4:26,60,0,2:3,5|4,21:3,1|4,1:647.711:301.344,62.7839:0.475866,0.475866:-1,-1,-1:8 0/0:153:1:4,4:4-4,4-4:55,89,0,8:4,55:3,8:1037.66:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10891582 . tattattattat tattattat,tattattattattattattattat,tattattattattattattattattattat . . END=10891593;RU=tat;PERIOD=3;REF=4;GRID=1,13;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,10.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/3:84:0.670844:4,10:4-4,3-10:33,46,0,5:2,2|3,8|4,23:3,1|4,1|8,2|10,1:639.782:318.314,73.8073:0,3.29193:-1,-1,-1:14 1/0:57:1:3,4:3-3,4-4:40,15,0,2:2,3|3,15|4,22:3,1|4,1:350.198:301.344,62.7839:0,0:-1,-1,-1:7 0/2:134:0.673705:4,8:4-4,3-8:58,68,0,7:3,7|4,51:3,3|4,1|5,1|8,2:958.948:305.271,63.0724:0,2.07009:-1,-1,-1:12 +chr21 10893903 . aaaacaaaacaaaac . . . END=10893917;RU=aaaac;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:198:1:3,3:3-3,3-3:107,77,0,14:3,107:2,14:1218.45:318.314,73.8073:0,0:-1,-1,-1:6 0/0:151:1:3,3:3-3,3-3:80,63,0,8:3,80:2,8:934.057:301.344,62.7839:0,0:-1,-1,-1:6 0/0:230:1:3,3:3-3,3-3:123,89,0,18:3,123:2,18:1415.28:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10894808 . cttccttc . . . END=10894815;RU=cttc;PERIOD=4;REF=2;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:77:1:2,2:2-2,2-2:41,34,0,2:2,41:2,2:476.92:318.314,73.8073:0,0:-1,-1,-1:4 0/0:45:1:2,2:2-2,2-2:20,24,0,1:2,20:2,1:304.373:301.344,62.7839:0,0:-1,-1,-1:4 0/0:112:1:2,2:2-3,2-3:50,59,0,3:2,50:2,2|3,1:756.59:305.271,63.0724:0.419363,0.419363:-1,-1,-1:4 +chr21 10898044 . ttcagttcagttcag . . . END=10898058;RU=ttcag;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:100:1:3,3:3-3,3-3:49,43,0,8:3,49:2,8:648.047:318.314,73.8073:0,0:-1,-1,-1:6 0/0:58:1:3,3:3-3,3-3:28,25,0,5:3,28:2,5:374.197:301.344,62.7839:0,0:-1,-1,-1:6 0/0:108:1:3,3:3-3,3-3:52,45,0,11:3,52:2,11:690.361:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10902624 . agaaagaaagaa . . . END=10902635;RU=agaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:3,3:3-3,3-3:46,41,0,6:3,46:2,6:590.205:318.314,73.8073:0,0:-1,-1,-1:6 0/0:70:1:3,3:3-3,3-3:33,32,0,5:3,33:2,5:456.251:301.344,62.7839:0,0:-1,-1,-1:6 0/0:151:1:3,3:3-3,3-3:79,61,0,11:3,79:2,11:952.19:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10906774 . aacatatataaacatatata . . . END=10906793;RU=aacatatata;PERIOD=10;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:64:1:2,2:2-2,2-2:28,36,0,0:2,28:NULL:429.03:318.314,73.8073:0,0:-1,-1,-1:4 0/0:32:0.999759:2,2:2-2,2-2:16,16,0,0:2,16:NULL:211.897:301.344,62.7839:0,0:-1,-1,-1:4 0/0:104:1:2,2:2-2,2-2:53,51,0,0:2,53:NULL:678.533:305.271,63.0724:0,0:-1,-1,-1:4 +chr21 10910936 . cttttcttttctttt . . . END=10910950;RU=ctttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:77:0.999998:3,3:3-3,3-3:22,36,0,19:3,22:2,19:539.008:318.314,73.8073:0,0:-1,-1,-1:6 0/0:54:1:3,3:3-3,3-3:30,17,0,7:3,30:2,7:324.721:301.344,62.7839:0,0:-1,-1,-1:6 0/0:106:1:3,3:3-3,3-3:55,39,0,12:3,55:2,12:660.083:305.271,63.0724:0,0:-1,-1,-1:6 +chr21 10916040 . tcctcctcctcc . . . END=10916051;RU=tcc;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:97:1:4,4:4-4,4-4:45,47,0,5:4,45:3,5:634.907:318.314,73.8073:0,0:-1,-1,-1:8 0/0:51:1:4,4:4-4,4-4:31,17,0,3:4,31:3,3:302.816:301.344,62.7839:0,0:-1,-1,-1:8 0/0:118:1:4,4:4-4,4-4:57,59,0,2:4,57:3,2:759.833:305.271,63.0724:0,0:-1,-1,-1:8 +chr21 10917405 . aaaacaaaacaaaacaaaacaaaac . . . END=10917429;RU=aaaac;PERIOD=5;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:80:1:5,5:5-5,5-5:35,28,0,17:5,35:2,1|3,2|4,14:513.802:318.314,73.8073:0,0:-1,-1,-1:10 0/0:67:1:5,5:5-5,5-5:29,27,0,11:5,29:3,1|4,10:440.155:301.344,62.7839:0,0:-1,-1,-1:10 0/0:149:1:5,5:5-5,5-5:61,58,0,30:5,61:2,2|3,13|4,15:976.005:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10918476 . tttgttttgttttgttttgttttgt . . . END=10918500;RU=tttgt;PERIOD=5;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:107:1:5,5:5-5,5-5:48,37,0,22:5,48:2,1|3,12|4,9:684.217:318.314,73.8073:0,0:-1,-1,-1:10 0/0:59:0.999801:5,5:5-5,5-5:16,26,0,17:5,16:2,1|3,4|4,12:411.265:301.344,62.7839:0,0:-1,-1,-1:10 0/0:156:1:5,5:5-5,5-5:55,59,0,42:5,55:2,1|3,14|4,27:1055.8:305.271,63.0724:0,0:-1,-1,-1:10 +chr21 10919624 . acacacacacacacacacacacacacac acacacacacacacacacacacacacacacac . . END=10919651;RU=ac;PERIOD=2;REF=14;GRID=10,19;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=14.0,16.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:0.999966:14,14:14-16,14-16:39,51,0,27:13,2|14,37:5,1|6,2|7,3|8,4|9,3|10,3|11,5|12,4|13,1|16,1:857.02:318.314,73.8073:0.885129,0.885129:-1,-1,-1:28 0/0:64:0.999978:14,14:14-14,14-14:27,24,0,13:13,2|14,25:5,2|6,1|7,2|8,1|9,3|10,2|11,1|13,1:434.283:301.344,62.7839:0,0:-1,-1,-1:28 0/1:143:1:14,16:14-14,14-16:52,59,0,32:13,4|14,34|15,2|16,12:4,2|5,3|6,2|7,4|8,2|9,3|10,3|11,3|12,6|13,3|15,1:1041.53:305.271,63.0724:0,0.339533:-1,-1,-1:30 +chr21 10920272 . tttgtttgtttgtttg . . . END=10920287;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:4,4:4-4,4-4:44,40,0,9:4,44:2,1|3,8:599.056:318.314,73.8073:0,0:-1,-1,-1:8 0/0:74:1:4,4:4-4,4-4:35,30,0,9:4,35:2,1|3,8:468.807:301.344,62.7839:0,0:-1,-1,-1:8 0/0:141:1:4,4:4-4,4-4:53,66,0,22:4,53:2,6|3,16:949.417:305.271,63.0724:0,0:-1,-1,-1:8 diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess_norm.vcf b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess_norm.vcf new file mode 100644 index 00000000..9924b04d --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess_norm.vcf @@ -0,0 +1,200 @@ +##fileformat=VCFv4.1 +##FILTER= +##command=GangSTR-2.4.4 --bam /gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12878.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12891.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12892.bam --ref /storage/resources/dbase/human/hg19/hg19.fa --out pgtrio_chr21 --regions hg19_ver13_1.bed --quiet --chrom chr21 +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##command-AnnotaTR=/Users/melissagymrek/workspace/TRTools/trtools/annotaTR/annotaTR.py --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_gangstr.sorted.vcf.gz --dosages bestguess_norm --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/gangstr_bestguess_norm +##FORMAT= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 NA12891 NA12892 +chr21 9489666 . gtatatgtatat . . . END=9489677;RU=gtatat;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:129:1:2,2:2-2,2-2:35,94,0,0:2,35:NULL:1010.57:318.314,73.8073:0,0:-1,-1,-1:0 0/0:137:1:2,2:2-2,2-2:54,83,0,0:2,54:NULL:968.627:301.344,62.7839:0,0:-1,-1,-1:0 0/0:148:1:2,2:2-2,2-2:47,101,0,0:2,47:NULL:1101.84:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9489775 . tatgtatg . . . END=9489782;RU=tatg;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:102:1:2,2:2-2,2-2:54,48,0,0:2,54:NULL:665.189:318.314,73.8073:0,0:-1,-1,-1:0 0/0:79:1:2,2:2-2,2-2:51,28,0,0:2,51:NULL:465.025:301.344,62.7839:0,0:-1,-1,-1:0 0/0:106:1:2,2:2-2,2-2:60,46,0,0:2,60:NULL:650.205:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9500096 . ataataataataataataata ataataataataataata . . END=9500116;RU=ata;PERIOD=3;REF=7;GRID=3,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/1:100:1:6,6:6-6,6-6:51,37,0,11:6,51:4,2|5,6|6,3:634.015:318.314,73.8073:0,0:-1,-1,-1:0 1/1:150:1:6,6:6-6,6-6:86,44,0,20:6,86:3,5|4,3|5,7|6,5:907.256:301.344,62.7839:0,0:-1,-1,-1:0 1/1:124:0.769376:6,6:6-7,6-7:66,37,0,20:6,52|7,14:3,2|4,4|5,5|6,9:801.727:305.271,63.0724:0.499387,0.499387:-1,-1,-1:0 +chr21 9501849 . atatatatatatat atatatatatat . . END=9501862;RU=at;PERIOD=2;REF=7;GRID=1,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:75:0.999989:6,7:6-6,7-7:22,51,0,1:6,8|7,14:5,1:554.37:318.314,73.8073:0.139319,0:-1,-1,-1:1 0/0:89:0.490757:7,7:3-7,3-7:26,61,0,0:6,5|7,21:NULL:647.833:301.344,62.7839:1.00747,1.00747:-1,-1,-1:2 1/0:110:1:6,7:6-6,7-7:37,71,0,2:6,14|7,23:4,1|5,1:783.874:305.271,63.0724:0.0990099,0:-1,-1,-1:1 +chr21 9502317 . ttctctttctctttctct . . . END=9502334;RU=ttctct;PERIOD=6;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:83:1:3,3:3-3,3-3:40,37,0,6:3,40:2,6:552.082:318.314,73.8073:0,0:-1,-1,-1:0 0/0:116:1:3,3:3-3,3-3:52,52,0,12:3,52:2,12:757.738:301.344,62.7839:0,0:-1,-1,-1:0 0/0:117:1:3,3:3-3,3-3:66,46,0,5:3,66:2,5:721.51:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9514260 . aaataaataaat . . . END=9514271;RU=aaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:150:1:3,3:3-3,3-3:84,62,0,4:3,84:2,4:925.215:318.314,73.8073:0,0:-1,-1,-1:0 0/0:162:1:3,3:3-3,3-3:90,63,0,9:3,90:2,9:983.727:301.344,62.7839:0,0:-1,-1,-1:0 0/0:203:1:3,3:3-3,3-3:122,66,0,15:3,122:2,15:1197.02:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9519030 . aaataaat . . . END=9519037;RU=aaat;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:60,74,0,0:2,60:NULL:884.802:318.314,73.8073:0,0:-1,-1,-1:0 0/0:166:1:2,2:2-2,2-2:77,89,0,0:2,77:NULL:1071.46:301.344,62.7839:0,0:-1,-1,-1:0 0/0:187:1:2,2:2-2,2-2:94,93,0,0:2,94:NULL:1178.63:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9522213 . attcattcattc . . . END=9522224;RU=attc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:193:1:3,3:3-3,3-3:92,88,0,13:3,92:2,13:1235.13:318.314,73.8073:0,0:-1,-1,-1:0 0/0:209:1:3,3:3-3,3-3:117,78,0,14:3,117:2,14:1283.31:301.344,62.7839:0,0:-1,-1,-1:0 0/0:230:1:3,3:3-3,3-3:129,82,0,19:3,129:2,19:1408.82:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9531868 . atagatagatagatagatag atagatagatagatagatagatag,atagatagatagatagatagatagatagatagatagatagatag,atagatagatagatagatagatagatagatagatagatagatagatag . . END=9531887;RU=atag;PERIOD=4;REF=5;GRID=2,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,12.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 3/3:130:0.375962:12,12:8-12,8-12:2,80,0,48:12,2:3,3|4,5|5,5|6,5|7,7|8,9|9,6|10,3|11,3|12,2:1052.95:318.314,73.8073:1.2476,1.2476:-1,-1,-1:2 2/2:181:0.349551:11,11:10-11,10-11:0,103,0,77:NULL:2,12|3,6|4,5|5,8|6,8|7,6|8,12|9,8|10,8|11,4:1452.9:301.344,62.7839:0.412766,0.412766:-1,-1,-1:1.71429 1/3:155:0.821642:6,12:6-6,11-12:9,88,0,56:6,9:2,4|3,4|4,6|5,6|6,10|7,5|8,6|9,6|10,4|11,3|12,2:1234.27:305.271,63.0724:0,0.363246:-1,-1,-1:1.14286 +chr21 9536938 . tggaatggaa . . . END=9536947;RU=tggaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:130:1:2,2:2-2,2-2:65,65,0,0:2,65:NULL:827.982:318.314,73.8073:0,0:-1,-1,-1:0 0/0:151:1:2,2:2-2,2-2:71,80,0,0:2,71:NULL:980.534:301.344,62.7839:0,0:-1,-1,-1:0 0/0:175:1:2,2:2-2,2-2:88,87,0,0:2,88:NULL:1118.99:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9542893 . gtggggtggg . . . END=9542902;RU=gtggg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:110:1:2,2:2-2,2-2:45,65,0,0:2,45:NULL:755.699:318.314,73.8073:0,0:-1,-1,-1:0 0/0:126:1:2,2:2-2,2-2:58,68,0,0:2,58:NULL:835.458:301.344,62.7839:0,0:-1,-1,-1:0 0/0:132:1:2,2:2-2,2-2:66,66,0,0:2,66:NULL:856.831:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9544462 . ccctggacctgccctggacctg . . . END=9544483;RU=ccctggacctg;PERIOD=11;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:135:1:2,2:2-2,2-2:46,89,0,0:1,2|2,44:NULL:991.733:318.314,73.8073:0.0990099,0.0990099:-1,-1,-1:0 0/0:181:1:2,2:2-2,2-2:56,125,0,0:1,2|2,54:NULL:1334.25:301.344,62.7839:0,0:-1,-1,-1:0 0/0:172:1:2,2:2-2,2-2:64,108,0,0:2,64:NULL:1210.57:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9544689 . cccagacccaga . . . END=9544700;RU=cccaga;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:153:1:2,2:2-2,2-2:62,91,0,0:2,62:NULL:1063.75:318.314,73.8073:0,0:-1,-1,-1:0 0/0:175:1:2,2:2-2,2-2:74,101,0,0:2,74:NULL:1186.48:301.344,62.7839:0,0:-1,-1,-1:0 0/0:163:1:2,2:2-2,2-2:79,84,0,0:2,79:NULL:1069.94:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9545748 . gccctgccctgccct . . . END=9545762;RU=gccct;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:139:1:3,3:3-3,3-3:56,76,0,7:3,56:2,7:953.496:318.314,73.8073:0,0:-1,-1,-1:0 0/0:163:1:3,3:3-3,3-3:62,94,0,7:3,62:2,7:1143.59:301.344,62.7839:0,0:-1,-1,-1:0 0/0:181:1:3,3:3-3,3-3:80,89,0,12:3,80:2,12:1204.84:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9545997 . ccctgcccctgc . . . END=9546008;RU=ccctgc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:116:1:2,2:2-2,2-2:67,49,0,0:2,67:NULL:707.853:318.314,73.8073:0,0:-1,-1,-1:0 0/0:147:1:2,2:2-2,2-2:77,70,0,0:2,77:NULL:931.406:301.344,62.7839:0,0:-1,-1,-1:0 0/0:144:1:2,2:2-2,2-2:78,66,0,0:2,78:NULL:902.577:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9546390 . gccctgccct . . . END=9546399;RU=gccct;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:115:1:2,2:2-2,2-2:64,51,0,0:2,64:NULL:725.256:318.314,73.8073:0,0:-1,-1,-1:0 0/0:96:1:2,2:2-2,2-2:56,40,0,0:2,56:NULL:591.825:301.344,62.7839:0,0:-1,-1,-1:0 0/0:132:1:2,2:2-2,2-2:78,54,0,0:2,78:NULL:806.841:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9546720 . ctggccctggcc . . . END=9546731;RU=ctggcc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:118:1:2,2:2-2,2-2:55,62,0,0:2,55:NULL:780.779:318.314,73.8073:0,0:-1,-1,-1:0 0/0:126:1:2,2:2-2,2-2:52,74,0,0:2,52:NULL:851.068:301.344,62.7839:0,0:-1,-1,-1:0 0/0:127:1:2,2:2-2,2-2:68,59,0,0:2,68:NULL:803.672:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9548764 . tgccctgccc . . . END=9548773;RU=tgccc;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:121:1:2,2:2-2,2-2:41,80,0,0:2,41:NULL:876.203:318.314,73.8073:0,0:-1,-1,-1:0 0/0:112:1:2,2:2-2,2-2:66,46,0,0:2,66:NULL:686.795:301.344,62.7839:0,0:-1,-1,-1:0 0/0:139:1:2,2:2-2,2-2:62,77,0,0:2,62:NULL:926.532:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9549157 . tgaccctgaccc . . . END=9549168;RU=tgaccc;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:138:1:2,2:2-2,2-2:60,78,0,0:2,60:NULL:932.635:318.314,73.8073:0,0:-1,-1,-1:0 0/0:150:1:2,2:2-2,2-2:67,83,0,0:2,67:NULL:1000.13:301.344,62.7839:0,0:-1,-1,-1:0 0/0:150:1:2,2:2-2,2-2:68,82,0,0:2,68:NULL:1008.47:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9549337 . gccctgccct . . . END=9549346;RU=gccct;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:114:1:2,2:2-2,2-2:46,68,0,0:2,46:NULL:794.615:318.314,73.8073:0,0:-1,-1,-1:0 0/0:143:1:2,2:2-2,2-2:63,80,0,0:2,63:NULL:951.114:301.344,62.7839:0,0:-1,-1,-1:0 0/0:152:1:2,2:2-2,2-2:75,77,0,0:2,75:NULL:978.41:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9569046 . tatatatatatatata tatatatatatata,tatatatatatatatata,tatatatatatatatatatata . . END=9569061;RU=ta;PERIOD=2;REF=8;GRID=4,14;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,11.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/3:50:0.946293:8,11:8-9,9-11:30,16,0,3:8,12|9,11|11,7:6,2|8,1:339.671:318.314,73.8073:0.431574,0.957892:-1,-1,-1:1.25 0/2:20:0.888563:8,9:7-8,7-11:17,1,0,2:7,3|8,8|9,4|11,2:7,1|8,1:129.103:301.344,62.7839:0.525033,1.35358:-1,-1,-1:0.75 1/0:35:0.996543:7,8:7-9,8-9:29,3,0,2:7,8|8,15|9,6:4,1|5,1:202.29:305.271,63.0724:0.944183,0.323567:-1,-1,-1:0.25 +chr21 9573928 . aaacaaacaaac . . . END=9573939;RU=aaac;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:159:1:3,3:3-3,3-3:80,66,0,13:3,80:2,13:1010.39:318.314,73.8073:0,0:-1,-1,-1:0 0/0:116:1:3,3:3-3,3-3:65,45,0,6:3,65:2,6:706.654:301.344,62.7839:0,0:-1,-1,-1:0 0/0:209:1:3,3:3-3,3-3:110,79,0,19:3,110:2,19:1288.76:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9579664 . tttgatttga . . . END=9579673;RU=tttga;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:98:1:2,2:2-2,2-2:55,43,0,0:2,55:NULL:606.421:318.314,73.8073:0,0:-1,-1,-1:0 0/0:104:1:2,2:2-2,2-2:66,38,0,0:2,66:NULL:604.144:301.344,62.7839:0,0:-1,-1,-1:0 0/0:125:1:2,2:2-2,2-2:86,39,0,0:2,86:NULL:696.417:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9593840 . ctgctgctgctg . . . END=9593851;RU=ctg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:176:1:4,4:4-4,4-4:95,76,0,5:4,95:3,5:1105.54:318.314,73.8073:0,0:-1,-1,-1:0 0/0:187:1:4,4:4-4,4-4:93,84,0,10:4,93:3,10:1186.13:301.344,62.7839:0,0:-1,-1,-1:0 0/0:204:1:4,4:4-4,4-4:115,84,0,5:4,115:3,5:1237.24:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9739491 . ttaaattaaa . . . END=9739500;RU=ttaaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:84,50,0,0:2,84:NULL:790.511:318.314,73.8073:0,0:-1,-1,-1:0 0/0:89:1:2,2:2-2,2-2:64,25,0,0:2,64:NULL:483.028:301.344,62.7839:0,0:-1,-1,-1:0 0/0:109:1:2,2:2-2,2-2:67,42,0,0:2,67:NULL:637.845:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9742909 . atttatttattt . . . END=9742920;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:95:1:3,3:3-3,3-3:33,51,0,11:3,33:2,11:663.736:318.314,73.8073:0,0:-1,-1,-1:0 0/0:40:0.999911:3,3:3-3,3-3:17,21,0,2:3,17:2,2:273.707:301.344,62.7839:0,0:-1,-1,-1:0 0/0:93:1:3,3:3-3,3-3:31,53,0,9:3,31:2,9:656.847:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9743363 . tttatttattta . . . END=9743374;RU=ttta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:72:1:3,3:3-3,3-3:30,36,0,6:3,30:2,6:496.194:318.314,73.8073:0,0:-1,-1,-1:0 0/0:50:1:3,3:3-3,3-3:26,18,0,6:3,26:2,6:316.83:301.344,62.7839:0,0:-1,-1,-1:0 0/0:70:1:3,3:3-3,3-3:33,27,0,10:3,33:2,10:451.407:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9745317 . taaattaaattaaat . . . END=9745331;RU=taaat;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:114:1:3,3:3-3,3-3:65,38,0,11:3,65:2,11:683.244:318.314,73.8073:0,0:-1,-1,-1:0 0/0:92:1:3,3:3-3,3-3:57,21,0,14:3,57:2,14:521.766:301.344,62.7839:0,0:-1,-1,-1:0 0/0:121:1:3,3:3-3,3-3:59,45,0,17:3,59:2,17:750.943:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9746400 . gcctgcctgcct . . . END=9746411;RU=gcct;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:91:1:3,3:3-3,3-3:56,30,0,5:3,56:2,5:529.993:318.314,73.8073:0,0:-1,-1,-1:0 0/0:68:1:3,3:3-3,3-3:46,19,0,3:3,46:2,3:382.088:301.344,62.7839:0,0:-1,-1,-1:0 0/0:97:1:3,3:3-3,3-3:69,24,0,4:3,69:2,4:535.216:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9750137 . aaaataaaataaaataaaat aaaataaaataaaataaaataaaataaaataaaat . . END=9750156;RU=aaaat;PERIOD=5;REF=4;GRID=1,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:139:0.999313:4,7:4-4,4-7:40,63,0,36:4,34|5,4|7,2:2,4|3,26|4,2|5,2|6,1|7,1:1002.29:318.314,73.8073:0,0.89526:-1,-1,-1:1 0/0:116:0.999767:4,4:4-7,4-7:36,53,0,27:4,32|5,4:2,5|3,20|4,1|7,1:818.639:301.344,62.7839:1.1947,1.1947:-1,-1,-1:0 0/1:158:0.999968:4,7:4-4,4-7:57,64,0,37:4,52|5,2|7,3:2,7|3,25|4,2|6,1|7,2:1090.38:305.271,63.0724:0,1.12244:-1,-1,-1:1 +chr21 9750998 . ttattattattatta . . . END=9751012;RU=tta;PERIOD=3;REF=5;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:104:1:5,5:5-5,5-5:56,30,0,18:4,4|5,52:3,2|4,16:653.516:318.314,73.8073:0,0:-1,-1,-1:0 0/0:64:1:5,5:5-5,5-5:38,19,0,6:5,38:4,6:376.856:301.344,62.7839:0,0:-1,-1,-1:0 0/0:112:1:5,5:5-5,5-5:59,37,0,16:4,3|5,56:3,4|4,12:703.895:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9753490 . agaaagaaagaa . . . END=9753501;RU=agaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:102:1:3,3:3-3,3-3:73,28,0,1:3,73:2,1:565.197:318.314,73.8073:0,0:-1,-1,-1:0 0/0:62:1:3,3:3-3,3-3:43,12,0,7:3,43:2,7:344.716:301.344,62.7839:0,0:-1,-1,-1:0 0/0:90:1:3,3:3-3,3-3:64,20,0,6:3,64:2,6:495.016:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9757375 . ttgtttgt . . . END=9757382;RU=ttgt;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:48:0.999959:2,2:2-2,2-2:18,30,0,0:2,18:NULL:337.967:318.314,73.8073:0,0:-1,-1,-1:0 0/0:32:0.997699:2,2:2-2,2-2:12,20,0,0:2,12:NULL:218.431:301.344,62.7839:0,0:-1,-1,-1:0 0/0:65:1.00001:2,2:2-2,2-2:22,43,0,0:2,22:NULL:457.344:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9760484 . aaaggaaagg . . . END=9760493;RU=aaagg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:44:1:2,2:2-2,2-2:24,20,0,0:2,24:NULL:280.685:318.314,73.8073:0,0:-1,-1,-1:0 0/0:24:0.999364:2,2:2-2,2-2:14,10,0,0:2,14:NULL:146.806:301.344,62.7839:0,0:-1,-1,-1:0 0/0:41:1:2,2:2-2,2-2:23,18,0,0:2,23:NULL:252.272:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 9889282 . ttaaattaaa . . . END=9889291;RU=ttaaa;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:99:1:2,2:2-2,2-2:51,48,0,0:2,51:NULL:630.114:318.314,73.8073:0,0:-1,-1,-1:0 0/0:91:1:2,2:2-2,2-2:47,44,0,0:2,47:NULL:574.234:301.344,62.7839:0,0:-1,-1,-1:0 0/0:79:1:2,2:2-2,2-2:51,28,0,0:2,51:NULL:455.96:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10209954 . cacacacacacacaca . . . END=10209969;RU=ca;PERIOD=2;REF=8;GRID=4,11;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:73:1:8,8:8-8,8-8:25,43,0,4:8,25:6,3|7,1:512.766:318.314,73.8073:0,0:-1,-1,-1:0 0/0:74:1:8,8:8-8,8-8:26,44,0,4:8,26:4,1|5,2|6,1:525.289:301.344,62.7839:0,0:-1,-1,-1:0 0/0:126:1:8,8:8-8,8-8:56,52,0,17:8,56:4,2|5,3|6,3|7,9:820.528:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10211308 . tttgttttgt . . . END=10211317;RU=tttgt;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:162:1:2,2:2-2,2-2:79,83,0,0:2,79:NULL:1056.32:318.314,73.8073:0,0:-1,-1,-1:0 0/0:183:1:2,2:2-2,2-2:80,103,0,0:2,80:NULL:1246.11:301.344,62.7839:0,0:-1,-1,-1:0 0/0:176:1:2,2:2-2,2-2:86,90,0,0:2,86:NULL:1130.71:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10371459 . acacacacacacacacacac acacacacacacacacacacac,acacacacacacacacacacacacac,acacacacacacacacacacacacacacacacac . . END=10371478;RU=ac;PERIOD=2;REF=10;GRID=7,20;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=10.0,17.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/2:142:0.999999:11,13:11-11,12-13:53,65,0,24:10,9|11,18|12,14|13,8|14,4:5,3|6,5|7,5|8,3|9,3|10,1|11,2|12,1|13,1:1093.41:318.314,73.8073:0.0990099,0.465241:-1,-1,-1:0.571429 1/2:110:1:11,13:11-11,13-14:40,51,0,19:11,18|12,5|13,11|14,6:6,2|7,2|8,3|9,3|10,7|12,1|13,1:821.11:301.344,62.7839:0.0990099,0.298675:-1,-1,-1:0.571429 0/3:146:0.949887:10,17:10-11,11-17:69,61,0,16:10,29|11,24|12,6|17,10:5,4|6,2|7,2|8,1|9,4|11,1|15,1|16,1:1112.25:305.271,63.0724:0.499975,1.4183:-1,-1,-1:1 +chr21 10371629 . attattattatt . . . END=10371640;RU=att;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:113:1:4,4:4-4,4-4:52,54,0,7:4,52:3,7:747.04:318.314,73.8073:0,0:-1,-1,-1:0 0/0:113:1:4,4:4-4,4-4:41,64,0,8:4,41:3,8:782.882:301.344,62.7839:0,0:-1,-1,-1:0 0/0:117:1:4,4:4-4,4-4:61,49,0,7:4,61:3,7:738.106:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10372155 . tttgtttgtttg . . . END=10372166;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:132:1:3,3:3-3,3-3:49,67,0,16:3,49:2,16:913.322:318.314,73.8073:0,0:-1,-1,-1:0 0/0:121:1:3,3:3-3,3-3:63,52,0,6:3,63:2,6:769.706:301.344,62.7839:0,0:-1,-1,-1:0 0/0:122:1:3,3:3-3,3-3:58,53,0,11:3,58:2,11:784.395:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10373906 . ttattattattatta . . . END=10373920;RU=tta;PERIOD=3;REF=5;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:5,5:5-5,5-5:68,77,0,11:5,68:3,2|4,9:1043.83:318.314,73.8073:0,0:-1,-1,-1:0 0/0:121:1:5,5:5-5,5-5:75,40,0,5:5,75:4,5:712.521:301.344,62.7839:0,0:-1,-1,-1:0 0/0:162:1:5,5:5-5,5-5:93,58,0,11:5,93:4,11:982.247:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10376334 . caaaaaacaaaaaacaaaaaa . . . END=10376354;RU=caaaaaa;PERIOD=7;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:170:1:3,3:3-3,3-3:87,64,0,19:3,87:2,19:1056:318.314,73.8073:0,0:-1,-1,-1:0 0/0:140:1:3,3:3-3,3-3:66,56,0,18:3,66:2,18:889.813:301.344,62.7839:0,0:-1,-1,-1:0 0/0:143:1:3,3:3-3,3-3:70,57,0,16:3,70:2,16:917.17:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10378210 . acacacacacac . . . END=10378221;RU=ac;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:169:1:6,6:6-6,6-6:90,64,0,15:6,90:4,5|5,10:1053.43:318.314,73.8073:0,0:-1,-1,-1:0 0/0:134:1:6,6:6-6,6-6:71,50,0,12:6,71:4,3|5,8|6,1:824.068:301.344,62.7839:0,0:-1,-1,-1:0 0/0:195:1:6,6:6-6,6-6:89,91,0,15:6,89:4,6|5,9:1270.97:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10380239 . tttatttatttattta . . . END=10380254;RU=ttta;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:190:1:4,4:4-4,4-4:78,87,0,25:4,78:2,7|3,18:1258.79:318.314,73.8073:0,0:-1,-1,-1:0 0/0:161:1:4,4:4-4,4-4:78,63,0,20:4,78:2,3|3,17:1020.63:301.344,62.7839:0,0:-1,-1,-1:0 0/0:198:1:4,4:4-4,4-4:97,81,0,20:4,97:2,7|3,13:1264.74:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10381150 . actcactcactc . . . END=10381161;RU=actc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:166:1:3,3:3-3,3-3:91,67,0,8:3,91:2,8:1029.5:318.314,73.8073:0,0:-1,-1,-1:0 0/0:164:1:3,3:3-3,3-3:85,61,0,18:3,85:2,18:1013.78:301.344,62.7839:0,0:-1,-1,-1:0 0/0:153:1:3,3:3-3,3-3:76,62,0,15:3,76:2,15:969.794:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10385412 . tttgtttgtttgtttg . . . END=10385427;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:4,4:4-4,4-4:65,70,0,21:4,65:2,4|3,17:1032.79:318.314,73.8073:0,0:-1,-1,-1:0 0/0:139:1:4,4:4-4,4-4:81,43,0,15:4,81:2,3|3,12:837.757:301.344,62.7839:0,0:-1,-1,-1:0 0/0:177:1:4,4:4-4,4-4:94,68,0,15:4,94:2,6|3,9:1098.4:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10385767 . ttattttatt . . . END=10385776;RU=ttatt;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:122:1:2,2:2-2,2-2:60,62,0,0:2,60:NULL:787.302:318.314,73.8073:0,0:-1,-1,-1:0 0/0:137:1:2,2:2-2,2-2:70,67,0,0:2,70:NULL:861.15:301.344,62.7839:0,0:-1,-1,-1:0 0/0:109:1:2,2:2-2,2-2:49,60,0,0:2,49:NULL:722.057:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10390611 . tttgtttgtttgtttg . . . END=10390626;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:171:1:4,4:4-4,4-4:78,83,0,10:4,78:2,3|3,7:1116.69:318.314,73.8073:0,0:-1,-1,-1:0 0/0:155:1:4,4:4-4,4-4:73,63,0,19:4,73:3,19:974.375:301.344,62.7839:0,0:-1,-1,-1:0 0/0:165:1:4,4:4-4,4-4:85,70,0,10:4,85:2,2|3,8:1043.71:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10390756 . ttgtttgtttgt . . . END=10390767;RU=ttgt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:79,75,0,6:3,79:2,6:1025.03:318.314,73.8073:0,0:-1,-1,-1:0 0/0:140:1:3,3:3-3,3-3:63,65,0,12:3,63:2,12:912.785:301.344,62.7839:0,0:-1,-1,-1:0 0/0:153:1:3,3:3-3,3-3:79,66,0,8:3,79:2,8:955.713:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10393957 . tgttttgttttgttt . . . END=10393971;RU=tgttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:159:1:3,3:3-3,3-3:64,79,0,16:3,64:2,16:1063.74:318.314,73.8073:0,0:-1,-1,-1:0 0/0:148:1:3,3:3-3,3-3:78,58,0,12:3,78:2,12:925.517:301.344,62.7839:0,0:-1,-1,-1:0 0/0:195:1:3,3:3-3,3-3:94,77,0,24:3,94:2,24:1236.54:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10397219 . ttcattcattca . . . END=10397230;RU=ttca;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:152:1:3,3:3-3,3-3:70,71,0,11:3,70:2,11:991.799:318.314,73.8073:0,0:-1,-1,-1:0 0/0:147:1:3,3:3-3,3-3:73,61,0,13:3,73:2,13:915.204:301.344,62.7839:0,0:-1,-1,-1:0 0/0:156:1:3,3:3-3,3-3:79,67,0,10:3,79:2,10:981.031:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10401098 . acacacacacacacacacacacac acacacacacacacac,acacacacacacacacacac,acacacacacacacacacacac,acacacacacacacacacacacacac . . END=10401121;RU=ac;PERIOD=2;REF=12;GRID=5,16;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,13.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:153:1:8,12:8-8,11-12:59,61,0,32:8,21|10,8|11,9|12,21:4,5|5,4|6,4|7,8|8,3|9,5|10,2|11,1:1145.79:318.314,73.8073:0,0.311527:-1,-1,-1:0.8 3/0:137:1:11,12:10-11,10-12:63,58,0,15:10,14|11,26|12,23:4,1|5,5|7,2|8,1|10,2|11,4:972.86:301.344,62.7839:0.284901,0.43384:-1,-1,-1:1.4 2/4:167:1:10,13:8-10,8-13:63,81,0,23:8,16|10,20|11,12|13,15:4,1|5,3|6,1|7,6|8,4|9,4|10,2|12,2:1317.74:305.271,63.0724:0.569802,1.0846:-1,-1,-1:1.4 +chr21 10406809 . tttgtttgtttg . . . END=10406820;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:3,3:3-3,3-3:63,64,0,6:3,63:2,6:860.09:318.314,73.8073:0,0:-1,-1,-1:0 0/0:117:1:3,3:3-3,3-3:52,60,0,5:3,52:2,5:771.38:301.344,62.7839:0,0:-1,-1,-1:0 0/0:118:0.938584:3,3:2-3,2-3:59,56,0,3:2,11|3,48:2,3:791.706:305.271,63.0724:0.45695,0.45695:-1,-1,-1:0 +chr21 10407459 . ataataataata . . . END=10407470;RU=ata;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:4,4:4-4,4-4:65,66,0,2:4,65:3,2:859.453:318.314,73.8073:0,0:-1,-1,-1:0 0/0:93:1:4,4:4-4,4-4:46,45,0,2:4,46:3,2:593.12:301.344,62.7839:0,0:-1,-1,-1:0 0/0:138:1:4,4:4-4,4-4:69,67,0,2:4,69:3,2:897.28:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10417085 . tatatatatatatata tatatatata . . END=10417100;RU=ta;PERIOD=2;REF=8;GRID=2,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:98:1:5,8:5-5,8-8:50,43,0,3:5,12|8,38:5,2|6,1:636.14:318.314,73.8073:0.29703,0:-1,-1,-1:1 1/0:35:1:5,8:5-5,8-8:29,4,0,2:5,14|8,15:4,1|7,1:195.201:301.344,62.7839:0,0:-1,-1,-1:1 1/0:66:1:5,8:5-5,8-8:45,21,0,0:5,27|8,18:NULL:400.11:305.271,63.0724:0,0:-1,-1,-1:1 +chr21 10418210 . aataaataaata . . . END=10418221;RU=aata;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:150:1:3,3:3-3,3-3:85,54,0,11:3,85:2,11:916.753:318.314,73.8073:0,0:-1,-1,-1:0 0/0:150:1:3,3:3-3,3-3:95,42,0,13:3,95:2,13:858.249:301.344,62.7839:0,0:-1,-1,-1:0 0/0:128:1:3,3:3-3,3-3:60,58,0,10:3,60:2,10:821.22:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10422555 . caaaacaaaacaaaacaaaa . . . END=10422574;RU=caaaa;PERIOD=5;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:155:1:4,4:4-4,4-4:87,51,0,17:4,87:3,17:938.671:318.314,73.8073:0,0:-1,-1,-1:0 0/0:174:1:4,4:4-4,4-4:84,63,0,27:4,84:2,2|3,25:1100.29:301.344,62.7839:0,0:-1,-1,-1:0 0/0:153:1:4,4:4-4,4-4:74,56,0,23:4,74:3,23:962.892:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10427016 . ttgttgttgttg . . . END=10427027;RU=ttg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:1:4,4:4-4,4-4:65,46,0,6:4,65:3,6:724.186:318.314,73.8073:0,0:-1,-1,-1:0 0/0:97:1:4,4:4-4,4-4:47,43,0,7:4,47:3,7:622.796:301.344,62.7839:0,0:-1,-1,-1:0 0/0:96:1:4,4:4-4,4-4:50,44,0,2:4,50:3,2:622.051:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10427527 . tctttctttctt . . . END=10427538;RU=tctt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:71,75,0,10:3,71:2,10:1026.66:318.314,73.8073:0,0:-1,-1,-1:0 0/0:142:1:3,3:3-3,3-3:77,59,0,6:3,77:2,6:881.271:301.344,62.7839:0,0:-1,-1,-1:0 0/0:137:1:3,3:3-3,3-3:66,60,0,11:3,66:2,11:883.475:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10434294 . ttgttgttgttg . . . END=10434305;RU=ttg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:182:1:4,4:4-4,4-4:89,84,0,9:4,89:3,9:1182.04:318.314,73.8073:0,0:-1,-1,-1:0 0/0:175:1:4,4:4-4,4-4:96,71,0,8:4,96:3,8:1073.47:301.344,62.7839:0,0:-1,-1,-1:0 0/0:198:1:4,4:4-4,4-4:86,100,0,12:4,86:3,12:1305.32:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10435828 . gtgtgtgtgtgt . . . END=10435839;RU=gt;PERIOD=2;REF=6;GRID=2,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:144:1:6,6:6-6,6-6:86,51,0,6:6,86:4,1|5,5:866.522:318.314,73.8073:0,0:-1,-1,-1:0 0/0:140:1:6,6:6-6,6-6:79,51,0,9:6,79:4,2|5,7:846.452:301.344,62.7839:0,0:-1,-1,-1:0 0/0:162:1:6,6:6-6,6-6:85,64,0,13:6,85:4,3|5,10:1014.82:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10440461 . tatttatttatt . . . END=10440472;RU=tatt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:153:1:3,3:3-3,3-3:98,50,0,5:3,98:2,5:881.696:318.314,73.8073:0,0:-1,-1,-1:0 0/0:107:1:3,3:3-3,3-3:75,28,0,4:3,75:2,4:592.54:301.344,62.7839:0,0:-1,-1,-1:0 0/0:149:1:3,3:3-3,3-3:79,57,0,13:3,79:2,13:923.071:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10442046 . aaagaaag . . . END=10442053;RU=aaag;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:2,2:2-2,2-2:68,78,0,0:2,68:NULL:955.584:318.314,73.8073:0,0:-1,-1,-1:0 0/0:113:1:2,2:2-2,2-2:64,49,0,0:2,64:NULL:696.857:301.344,62.7839:0,0:-1,-1,-1:0 0/0:122:1:2,2:2-2,2-2:55,67,0,0:2,55:NULL:809.477:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10444705 . ttcagttcag . . . END=10444714;RU=ttcag;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:148:1:2,2:2-2,2-2:68,80,0,0:2,68:NULL:974.228:318.314,73.8073:0,0:-1,-1,-1:0 0/0:121:1:2,2:2-2,2-2:56,65,0,0:2,56:NULL:780.631:301.344,62.7839:0,0:-1,-1,-1:0 0/0:133:1:2,2:2-2,2-2:60,73,0,0:2,60:NULL:892.279:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10445632 . taaattaaat . . . END=10445641;RU=taaat;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:109:1:2,2:2-2,2-2:52,57,0,0:2,52:NULL:700.607:318.314,73.8073:0,0:-1,-1,-1:0 0/0:83:1:2,2:2-2,2-2:47,36,0,0:2,47:NULL:505.642:301.344,62.7839:0,0:-1,-1,-1:0 0/0:122:1:2,2:2-2,2-2:58,64,0,0:2,58:NULL:786.663:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10448493 . tgttttgttttgttt . . . END=10448507;RU=tgttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:86,62,0,8:3,86:2,8:958.223:318.314,73.8073:0,0:-1,-1,-1:0 0/0:135:1:3,3:3-3,3-3:71,56,0,8:3,71:2,8:840.457:301.344,62.7839:0,0:-1,-1,-1:0 0/0:164:1:3,3:3-3,3-3:84,68,0,12:3,84:2,12:1024.75:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10449854 . ttatttatttatttat . . . END=10449869;RU=ttat;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:162:1:4,4:4-4,4-4:84,51,0,27:4,84:2,4|3,23:995.535:318.314,73.8073:0,0:-1,-1,-1:0 0/0:121:1:4,4:4-4,4-4:67,34,0,20:4,67:2,4|3,16:733.982:301.344,62.7839:0,0:-1,-1,-1:0 0/0:152:1:4,4:4-4,4-4:75,59,0,18:4,75:2,4|3,14:963.725:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10458423 . cttccttccttc . . . END=10458434;RU=cttc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:168:1:3,3:3-3,3-3:81,78,0,9:3,81:2,9:1077.66:318.314,73.8073:0,0:-1,-1,-1:0 0/0:147:1:3,3:3-3,3-3:75,63,0,9:3,75:2,9:927.65:301.344,62.7839:0,0:-1,-1,-1:0 0/0:176:1:3,3:3-3,3-3:83,79,0,14:3,83:2,14:1137.01:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10460929 . tttgtttgtttg . . . END=10460940;RU=tttg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:156:1:3,3:3-3,3-3:78,68,0,10:3,78:2,10:989.654:318.314,73.8073:0,0:-1,-1,-1:0 0/0:130:1:3,3:3-3,3-3:68,54,0,8:3,68:2,8:811.064:301.344,62.7839:0,0:-1,-1,-1:0 0/0:145:1:3,3:3-3,3-3:70,68,0,7:3,70:2,7:935.761:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10470497 . caaacaaacaaacaaa . . . END=10470512;RU=caaa;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:123:1:4,4:4-4,4-4:59,49,0,15:4,59:2,1|3,14:781.679:318.314,73.8073:0,0:-1,-1,-1:0 0/0:126:1:4,4:4-4,4-4:70,42,0,14:4,70:2,1|3,13:771.117:301.344,62.7839:0,0:-1,-1,-1:0 0/0:124:1:4,4:4-4,4-4:80,32,0,12:4,80:2,1|3,10|4,1:708.454:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10473581 . aaacaaaacaaaaca . . . END=10473595;RU=aaaca;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:75,72,0,13:3,75:2,13:1044.94:318.314,73.8073:0,0:-1,-1,-1:0 0/0:153:1:3,3:3-3,3-3:77,68,0,8:3,77:2,8:967.466:301.344,62.7839:0,0:-1,-1,-1:0 0/0:165:1:3,3:3-3,3-3:81,70,0,14:3,81:2,14:1044.01:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10475143 . ttgtttgtttgtttgt . . . END=10475158;RU=ttgt;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:115:1:4,4:4-4,4-4:67,34,0,14:4,67:3,14:685.204:318.314,73.8073:0,0:-1,-1,-1:0 0/0:91:1:4,4:4-4,4-4:55,26,0,10:4,55:2,1|3,9:525.928:301.344,62.7839:0,0:-1,-1,-1:0 0/0:103:1:4,4:4-4,4-4:76,20,0,7:4,76:3,7:547.261:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10479831 . ttttgttttg . . . END=10479840;RU=ttttg;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:111:1:2,2:2-2,2-2:48,63,0,0:2,48:NULL:749.28:318.314,73.8073:0,0:-1,-1,-1:0 0/0:92:1:2,2:2-2,2-2:54,38,0,0:2,54:NULL:555.428:301.344,62.7839:0,0:-1,-1,-1:0 0/0:111:1:2,2:2-2,2-2:65,46,0,0:2,65:NULL:672.721:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10480064 . ccttccttcctt . . . END=10480075;RU=cctt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:145:1:3,3:3-3,3-3:72,65,0,8:3,72:2,8:929.915:318.314,73.8073:0,0:-1,-1,-1:0 0/0:149:1:3,3:3-3,3-3:82,58,0,9:3,82:2,9:911.704:301.344,62.7839:0,0:-1,-1,-1:0 0/0:150:1:3,3:3-3,3-3:87,54,0,9:3,87:2,9:907.354:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10482173 . acaaacaaacaa . . . END=10482184;RU=acaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:43,74,0,11:3,43:2,11:892.919:318.314,73.8073:0,0:-1,-1,-1:0 0/0:110:1:3,3:3-3,3-3:29,75,0,6:3,29:2,6:794.12:301.344,62.7839:0,0:-1,-1,-1:0 0/0:99:1:3,3:3-3,3-3:29,63,0,7:3,29:2,7:720.023:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10482812 . aaaataaaataaaat . . . END=10482826;RU=aaaat;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:140:1:3,3:3-3,3-3:66,52,0,22:3,66:2,22:881.695:318.314,73.8073:0,0:-1,-1,-1:0 0/0:133:1:3,3:3-3,3-3:53,65,0,15:3,53:2,15:891.862:301.344,62.7839:0,0:-1,-1,-1:0 0/0:122:1:3,3:3-3,3-3:66,43,0,13:3,66:2,13:739.223:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10485199 . tctgttctgttctgt . . . END=10485213;RU=tctgt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:164:1:3,3:3-3,3-3:65,78,0,21:3,65:2,21:1101.4:318.314,73.8073:0,0:-1,-1,-1:0 0/0:131:1:3,3:3-3,3-3:59,56,0,16:3,59:2,16:847.745:301.344,62.7839:0,0:-1,-1,-1:0 0/0:153:1:3,3:3-3,3-3:71,73,0,9:3,71:2,9:994.559:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10492408 . aattaatt . . . END=10492415;RU=aatt;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:134:1:2,2:2-2,2-2:54,80,0,0:2,54:NULL:919.464:318.314,73.8073:0,0:-1,-1,-1:0 0/0:144:1:2,2:2-2,2-2:71,73,0,0:2,71:NULL:924.794:301.344,62.7839:0,0:-1,-1,-1:0 0/0:140:1:2,2:2-2,2-2:56,84,0,0:2,56:NULL:948.308:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10495506 . tctctctctctc . . . END=10495517;RU=tc;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:163:1:6,6:6-6,6-6:85,65,0,12:6,85:4,3|5,9:1014.31:318.314,73.8073:0,0:-1,-1,-1:0 0/0:173:1:6,6:6-6,6-6:92,66,0,15:6,92:4,4|5,11:1075.47:301.344,62.7839:0,0:-1,-1,-1:0 0/0:146:1:6,6:6-6,6-6:78,60,0,8:6,78:4,5|5,3:917.184:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10498831 . aaaataaaataaaataaaat aaaataaaataaaat . . END=10498850;RU=aaaat;PERIOD=5;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:165:1:4,4:4-4,4-4:76,65,0,24:4,76:2,6|3,18:1080.09:318.314,73.8073:0,0:-1,-1,-1:2 0/0:171:1:4,4:4-4,4-4:77,55,0,39:4,77:2,6|3,33:1085.95:301.344,62.7839:0,0:-1,-1,-1:2 1/0:195:0.999875:3,4:3-4,4-4:90,76,0,29:3,21|4,69:2,8|3,21:1306.14:305.271,63.0724:0.431574,0:-1,-1,-1:1 +chr21 10499541 . aaataaataaataaataaataaataaat aaataaataaataaataaataaataaataaataaat . . END=10499568;RU=aaat;PERIOD=4;REF=7;GRID=2,12;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,9.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:166:0.999981:7,9:7-7,9-9:57,49,0,58:7,52|9,5:2,2|3,11|4,11|5,9|6,19|8,6:1149.88:318.314,73.8073:0,0.19802:-1,-1,-1:1 0/1:125:1:7,9:7-7,9-9:45,38,0,42:7,32|9,13:3,10|4,6|5,6|6,13|7,1|8,6:873.908:301.344,62.7839:0,0:-1,-1,-1:1 0/0:167:0.998953:7,7:7-8,7-8:60,46,0,61:7,49|8,11:2,1|3,9|4,9|5,15|6,20|7,7:1148.24:305.271,63.0724:0.40582,0.40582:-1,-1,-1:0 +chr21 10501789 . aaacaaaaca . . . END=10501798;RU=aaaca;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:70:1:2,2:2-2,2-2:24,46,0,0:2,24:NULL:505.731:318.314,73.8073:0,0:-1,-1,-1:0 0/0:47:0.994639:2,2:2-2,2-2:11,36,0,0:2,11:NULL:351.341:301.344,62.7839:0,0:-1,-1,-1:0 0/0:87:1:2,2:2-2,2-2:33,54,0,0:2,33:NULL:603.638:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10503449 . atatatatatat . . . END=10503460;RU=at;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:1:6,6:6-6,6-6:58,59,0,0:6,58:NULL:756.286:318.314,73.8073:0,0:-1,-1,-1:0 0/0:91:1:6,6:6-6,6-6:55,34,0,2:6,55:4,1|5,1:534.908:301.344,62.7839:0,0:-1,-1,-1:0 0/0:126:1:6,6:6-6,6-6:65,60,0,0:6,65:NULL:792.081:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10503972 . ttttattttatttta . . . END=10503986;RU=tttta;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:3,3:3-3,3-3:62,68,0,16:3,62:2,16:958.782:318.314,73.8073:0,0:-1,-1,-1:0 0/0:136:1:3,3:3-3,3-3:74,51,0,11:3,74:2,11:839.552:301.344,62.7839:0,0:-1,-1,-1:0 0/0:178:1:3,3:3-3,3-3:90,65,0,23:3,90:2,23:1111.57:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10505871 . aacaacaacaacaac . . . END=10505885;RU=aac;PERIOD=3;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:157:1:5,5:5-5,5-5:59,90,0,8:5,59:4,8:1078.25:318.314,73.8073:0,0:-1,-1,-1:0 0/0:128:1:5,5:5-5,5-5:63,52,0,13:5,63:3,1|4,12:822.382:301.344,62.7839:0,0:-1,-1,-1:0 0/0:166:1:5,5:5-5,5-5:83,65,0,18:5,83:3,6|4,12:1051.26:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10508456 . tttctttc . . . END=10508463;RU=tttc;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:151:1:2,2:2-2,2-2:81,70,0,0:2,81:NULL:947.961:318.314,73.8073:0,0:-1,-1,-1:0 0/0:135:1:2,2:2-2,2-2:82,53,0,0:2,82:NULL:799.887:301.344,62.7839:0,0:-1,-1,-1:0 0/0:143:1:2,2:2-2,2-2:70,73,0,0:2,70:NULL:919.631:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10509432 . atttatttattt . . . END=10509443;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:149:1:3,3:3-3,3-3:71,75,0,3:3,71:2,3:968.151:318.314,73.8073:0,0:-1,-1,-1:0 0/0:139:1:3,3:3-3,3-3:87,47,0,5:3,87:2,5:818.142:301.344,62.7839:0,0:-1,-1,-1:0 0/0:140:1:3,3:3-3,3-3:71,64,0,5:3,71:2,5:880.527:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10510615 . gaatgaatgaat . . . END=10510626;RU=gaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:112:1:3,3:3-3,3-3:42,66,0,4:3,42:2,4:776.528:318.314,73.8073:0,0:-1,-1,-1:0 0/0:95:1:3,3:3-3,3-3:40,47,0,8:3,40:2,8:640.19:301.344,62.7839:0,0:-1,-1,-1:0 0/0:87:1:3,3:3-3,3-3:35,45,0,7:3,35:2,7:594.183:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10511750 . acacacacacac . . . END=10511761;RU=ac;PERIOD=2;REF=6;GRID=2,10;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:151:1:6,6:6-7,6-7:79,62,0,9:6,67|7,12:5,9:973.434:318.314,73.8073:0.270063,0.270063:-1,-1,-1:0 0/0:139:1:6,6:6-7,6-7:66,57,0,16:6,57|7,9:4,1|5,12|6,3:924.858:301.344,62.7839:0.253975,0.253975:-1,-1,-1:0 0/0:145:1:6,6:6-6,6-6:77,56,0,12:6,73|7,4:4,1|5,9|6,2:906.981:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10514420 . aatgaatgaatg . . . END=10514431;RU=aatg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:178:1:3,3:3-3,3-3:93,75,0,10:3,93:2,10:1119.79:318.314,73.8073:0,0:-1,-1,-1:0 0/0:162:1:3,3:3-3,3-3:79,76,0,7:3,79:2,7:1033.56:301.344,62.7839:0,0:-1,-1,-1:0 0/0:180:1:3,3:3-3,3-3:86,82,0,12:3,86:2,12:1164.33:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10514754 . atatatatatatatat atatatatatatatatat . . END=10514769;RU=at;PERIOD=2;REF=8;GRID=4,16;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=8.0,9.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:0.999593:8,8:8-9,8-9:68,71,0,6:7,2|8,54|9,12:4,1|5,1|6,2|7,1|8,1:1002.8:318.314,73.8073:0.615775,0.615775:-1,-1,-1:0 0/0:103:0.996321:8,8:8-9,8-9:46,51,0,5:8,38|9,8:5,3|6,1|7,1:693.143:301.344,62.7839:0.382696,0.382696:-1,-1,-1:0 0/1:126:1:8,9:8-8,9-9:52,70,0,4:8,21|9,31:4,2|5,1|7,1:892.926:305.271,63.0724:0,0:-1,-1,-1:1 +chr21 10516263 . tgtttgtttgtt . . . END=10516274;RU=tgtt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:195:1:3,3:3-3,3-3:95,87,0,13:3,95:2,13:1250.51:318.314,73.8073:0,0:-1,-1,-1:0 0/0:172:1:3,3:3-3,3-3:93,68,0,11:3,93:2,11:1061.16:301.344,62.7839:0,0:-1,-1,-1:0 0/0:183:1:3,3:3-3,3-3:99,70,0,14:3,99:2,14:1122.11:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10516555 . taataataataa . . . END=10516566;RU=taa;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:171:1:4,4:4-4,4-4:108,57,0,6:4,108:3,6:990.24:318.314,73.8073:0,0:-1,-1,-1:0 0/0:101:1:4,4:4-4,4-4:76,18,0,7:4,76:3,7:527.508:301.344,62.7839:0,0:-1,-1,-1:0 0/0:161:1:4,4:4-4,4-4:108,46,0,7:4,108:3,7:899.092:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10518861 . atatatatatatatatat atatatatatatatatatatat . . END=10518878;RU=at;PERIOD=2;REF=9;GRID=4,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=9.0,11.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:78:0.834008:9,11:9-9,9-11:26,48,0,4:9,16|10,5|11,5:4,2|7,2:579.731:318.314,73.8073:0,0.572719:-1,-1,-1:1 0/1:34:0.999981:9,11:7-9,11-11:11,21,0,0:9,4|11,7:NULL:232.96:301.344,62.7839:0.580708,0.39604:-1,-1,-1:1 0/1:63:1:9,11:9-9,11-11:26,35,0,2:9,10|10,3|11,13:5,1|8,1:452.584:305.271,63.0724:0,0.0990099:-1,-1,-1:1 +chr21 10524017 . ataataata . . . END=10524025;RU=ata;PERIOD=3;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:105:1:3,3:3-3,3-3:45,60,0,0:3,45:NULL:705.446:318.314,73.8073:0,0:-1,-1,-1:0 0/0:45:1:3,3:3-3,3-3:40,5,0,0:3,40:NULL:210.932:301.344,62.7839:0,0:-1,-1,-1:0 0/0:92:1:3,3:3-3,3-3:62,30,0,0:3,62:NULL:518.263:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10525445 . acagacagacag . . . END=10525456;RU=acag;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:149:1:3,3:3-3,3-3:86,51,0,12:3,86:2,12:890.756:318.314,73.8073:0,0:-1,-1,-1:0 0/0:148:1:3,3:3-3,3-3:86,57,0,5:3,86:2,5:888.273:301.344,62.7839:0,0:-1,-1,-1:0 0/0:127:1:3,3:3-3,3-3:73,49,0,5:3,73:2,5:756.575:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10527237 . ataataataataata . . . END=10527251;RU=ata;PERIOD=3;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:177:1:5,5:5-5,5-5:91,63,0,23:5,91:3,2|4,21:1096.15:318.314,73.8073:0,0:-1,-1,-1:0 0/0:148:1:5,5:5-5,5-5:91,42,0,15:5,91:3,3|4,12:854.78:301.344,62.7839:0,0:-1,-1,-1:0 0/0:141:1:5,5:5-5,5-5:82,41,0,18:5,82:3,2|4,16:844.463:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10529203 . tatatatatata tatatatata . . END=10529214;RU=ta;PERIOD=2;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:101:1:5,6:5-5,6-6:42,58,0,1:5,18|6,24:4,1:715.206:318.314,73.8073:0,0:-1,-1,-1:1 1/0:93:0.999999:5,6:5-5,5-6:40,51,0,2:5,26|6,14:4,2:649.337:301.344,62.7839:0,0.169767:-1,-1,-1:1 1/0:98:0.999999:5,6:5-5,5-6:31,63,0,4:5,19|6,12:4,4:730.14:305.271,63.0724:0,0.169767:-1,-1,-1:1 +chr21 10538484 . aattaaatta . . . END=10538493;RU=aatta;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:138:1:2,2:2-2,2-2:67,71,0,0:2,67:NULL:886.019:318.314,73.8073:0,0:-1,-1,-1:0 0/0:106:1:2,2:2-2,2-2:55,51,0,0:2,55:NULL:670.06:301.344,62.7839:0,0:-1,-1,-1:0 0/0:127:1:2,2:2-2,2-2:70,57,0,0:2,70:NULL:769.66:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10540729 . ataaataaataa . . . END=10540740;RU=ataa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:174:1:3,3:3-3,3-3:88,72,0,14:3,88:2,14:1098.24:318.314,73.8073:0,0:-1,-1,-1:0 0/0:116:1:3,3:3-3,3-3:73,32,0,11:3,73:2,11:665.295:301.344,62.7839:0,0:-1,-1,-1:0 0/0:199:1:3,3:3-3,3-3:102,75,0,22:3,102:2,22:1237.63:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10542121 . atttatttattt . . . END=10542132;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:103:1:3,3:3-3,3-3:46,52,0,5:3,46:2,5:682.963:318.314,73.8073:0,0:-1,-1,-1:0 0/0:103:1:3,3:3-3,3-3:46,48,0,9:3,46:2,9:674.393:301.344,62.7839:0,0:-1,-1,-1:0 0/0:124:1:3,3:3-3,3-3:59,58,0,7:3,59:2,7:795.157:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10542653 . caaacaaacaaa . . . END=10542664;RU=caaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:160:1:3,3:3-3,3-3:82,64,0,14:3,82:2,14:992.459:318.314,73.8073:0,0:-1,-1,-1:0 0/0:157:1:3,3:3-3,3-3:69,74,0,14:3,69:2,14:1023.18:301.344,62.7839:0,0:-1,-1,-1:0 0/0:154:1:3,3:3-3,3-3:75,67,0,12:3,75:2,12:983.783:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10545062 . atacatacatacatacatacatac atacatacatacatacatac . . END=10545085;RU=atac;PERIOD=4;REF=6;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:175:1:5,6:5-5,6-6:70,69,0,36:5,41|6,29:2,1|3,12|4,17|5,6:1208.25:318.314,73.8073:0,0:-1,-1,-1:1 1/1:180:0.999988:5,5:5-6,5-6:71,72,0,37:5,59|6,12:2,3|3,11|4,19|5,4:1223.43:301.344,62.7839:0.270063,0.270063:-1,-1,-1:0 1/1:164:1:5,5:5-5,5-5:75,61,0,28:5,64|6,11:2,1|3,6|4,17|5,4:1079.83:305.271,63.0724:0.139319,0.139319:-1,-1,-1:0 +chr21 10546607 . aattaattaatt . . . END=10546618;RU=aatt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:54,74,0,0:3,54:NULL:864.97:318.314,73.8073:0,0:-1,-1,-1:0 0/0:105:1:3,3:3-3,3-3:62,43,0,0:3,62:NULL:637.805:301.344,62.7839:0,0:-1,-1,-1:0 0/0:121:1:3,3:3-3,3-3:55,64,0,2:3,55:2,2:795.115:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10547387 . acacacacacacacacacacacacacacacacacac acacacacacacacacacacacacacacacac,acacacacacacacacacacacacacacacacacacacacacac . . END=10547422;RU=ac;PERIOD=2;REF=18;GRID=11,26;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=16.0,22.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:178:1:16,18:16-19,18-19:45,93,0,39:16,11|17,2|18,22|19,10:4,1|5,3|6,4|7,2|8,1|9,3|10,3|11,4|12,3|13,3|14,3|15,5|17,2|18,2:1378.5:318.314,73.8073:0.896026,0.21692:-1,-1,-1:0.333333 1/0:113:0.999649:16,18:16-16,18-19:37,53,0,21:16,14|17,3|18,11|19,9:4,1|6,1|7,3|8,2|9,3|10,2|11,1|12,1|13,1|14,3|15,2|18,1:851.455:301.344,62.7839:0,0.374147:-1,-1,-1:0.333333 0/2:148:0.815754:18,22:18-18,21-23:33,80,0,33:17,2|18,26|21,2|22,3:5,4|6,4|7,2|8,2|9,2|10,1|11,4|12,2|13,3|14,1|15,1|16,3|17,3|19,1:1142.82:305.271,63.0724:0,0.713971:-1,-1,-1:1.33333 +chr21 10551531 . caaacaaacaaa . . . END=10551542;RU=caaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:69,48,0,11:3,69:2,11:778.445:318.314,73.8073:0,0:-1,-1,-1:0 0/0:137:1:3,3:3-3,3-3:76,52,0,9:3,76:2,9:829.541:301.344,62.7839:0,0:-1,-1,-1:0 0/0:166:1:3,3:3-3,3-3:89,58,0,19:3,89:2,19:1008.4:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10552733 . tctatctatcta . . . END=10552744;RU=tcta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:136:1:3,3:3-3,3-3:67,56,0,13:3,67:2,13:864.179:318.314,73.8073:0,0:-1,-1,-1:0 0/0:132:1:3,3:3-3,3-3:76,41,0,15:3,76:2,15:778.435:301.344,62.7839:0,0:-1,-1,-1:0 0/0:145:1:3,3:3-3,3-3:84,54,0,7:3,84:2,7:863.56:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10565738 . ttttgttttgttttgttttg ttttgttttgttttgttttgttttg . . END=10565757;RU=ttttg;PERIOD=5;REF=4;GRID=1,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:139:0.976685:4,5:4-4,4-5:38,78,0,23:4,38:2,5|3,13|4,2|5,3:1043.39:318.314,73.8073:0,0.345543:-1,-1,-1:1 0/1:142:0.974666:4,5:4-4,4-5:36,75,0,30:4,36:2,12|3,10|4,6|5,2:1047.54:301.344,62.7839:0,0.484441:-1,-1,-1:1 0/1:160:0.967178:4,5:4-4,4-5:44,87,0,29:4,44:2,5|3,13|4,9|5,2:1172.35:305.271,63.0724:0,0.499779:-1,-1,-1:1 +chr21 10568605 . aaataaaataaaata . . . END=10568619;RU=aaata;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:135:1:3,3:3-3,3-3:71,45,0,19:3,71:2,19:831.199:318.314,73.8073:0,0:-1,-1,-1:0 0/0:120:1:3,3:3-3,3-3:60,52,0,8:3,60:2,8:761.502:301.344,62.7839:0,0:-1,-1,-1:0 0/0:167:1:3,3:3-3,3-3:84,66,0,17:3,84:2,17:1046.29:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10568730 . tgtatgtatgta . . . END=10568741;RU=tgta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:147:1:3,3:3-3,3-3:76,59,0,12:3,76:2,12:915.437:318.314,73.8073:0,0:-1,-1,-1:0 0/0:129:1:3,3:3-3,3-3:65,60,0,4:3,65:2,4:815.367:301.344,62.7839:0,0:-1,-1,-1:0 0/0:188:1:3,3:3-3,3-3:94,79,0,15:3,94:2,15:1180.23:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10572046 . catacatacata . . . END=10572057;RU=cata;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:154:1:3,3:3-3,3-3:92,55,0,7:3,92:2,7:924.825:318.314,73.8073:0,0:-1,-1,-1:0 0/0:118:1:3,3:3-3,3-3:74,39,0,5:3,74:2,5:679.8:301.344,62.7839:0,0:-1,-1,-1:0 0/0:122:1:3,3:3-3,3-3:77,44,0,1:3,77:2,1:706.924:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10572909 . atttatttattt . . . END=10572920;RU=attt;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:146:1:3,3:3-3,3-3:75,61,0,10:3,75:2,10:922.17:318.314,73.8073:0,0:-1,-1,-1:0 0/0:151:1:3,3:3-3,3-3:82,56,0,13:3,82:2,13:917.761:301.344,62.7839:0,0:-1,-1,-1:0 0/0:140:1:3,3:3-3,3-3:72,51,0,17:3,72:2,17:867.464:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10573618 . tttgtttgtttgtttg tttgtttgtttg . . END=10573633;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:172:0.820382:4,4:3-4,3-4:87,64,0,21:3,17|4,70:2,4|3,17:1144.01:318.314,73.8073:0.489073,0.489073:-1,-1,-1:2 0/0:150:1:4,4:4-4,4-4:82,52,0,16:4,82:2,4|3,12:912.408:301.344,62.7839:0,0:-1,-1,-1:2 1/0:146:1:3,4:3-3,4-4:78,52,0,16:3,39|4,39:2,9|3,7:951.595:305.271,63.0724:0,0:-1,-1,-1:1 +chr21 10574632 . ataaataaataa . . . END=10574643;RU=ataa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:202:1:3,3:3-3,3-3:117,72,0,13:3,117:2,13:1214.83:318.314,73.8073:0,0:-1,-1,-1:0 0/0:169:1:3,3:3-3,3-3:99,52,0,18:3,99:2,18:1002.73:301.344,62.7839:0,0:-1,-1,-1:0 0/0:191:1:3,3:3-3,3-3:111,65,0,15:3,111:2,15:1137.76:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10588972 . gagagagagagagagagagagagaga gagagagagagagagagagagaga . . END=10588997;RU=ga;PERIOD=2;REF=13;GRID=5,17;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=12.0,13.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:169:0.99902:12,13:11-12,11-13:67,67,0,35:11,18|12,24|13,25:4,2|5,3|6,5|7,2|8,3|9,5|10,7|11,4|12,4:1250.37:318.314,73.8073:0.431574,0.647134:-1,-1,-1:1 1/0:148:0.999999:12,13:11-12,11-13:66,50,0,32:11,16|12,29|13,21:4,2|5,6|6,3|7,3|8,4|9,3|10,4|11,5|12,2:1072.64:301.344,62.7839:0.298675,0.89526:-1,-1,-1:1 1/0:148:0.999879:12,13:9-12,9-13:60,54,0,33:9,7|11,4|12,15|13,34:4,1|5,3|6,3|7,1|8,3|9,6|10,7|11,6|12,2|14,1:1113.18:305.271,63.0724:1.42512,0.679066:-1,-1,-1:1 +chr21 10594833 . aaaataaaat . . . END=10594842;RU=aaaat;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:121:1:2,2:2-2,2-2:62,59,0,0:2,62:NULL:765.398:318.314,73.8073:0,0:-1,-1,-1:0 0/0:112:1:2,2:2-2,2-2:56,56,0,0:2,56:NULL:715.048:301.344,62.7839:0,0:-1,-1,-1:0 0/0:143:1:2,2:2-2,2-2:73,70,0,0:2,73:NULL:902.064:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10599597 . cgggcgggcggg . . . END=10599608;RU=cggg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:137:1:3,3:3-3,3-3:69,63,0,5:3,69:2,5:870.885:318.314,73.8073:0,0:-1,-1,-1:0 0/0:128:1:3,3:3-3,3-3:62,62,0,4:3,62:2,4:829.072:301.344,62.7839:0,0:-1,-1,-1:0 0/0:124:1:3,3:3-3,3-3:64,51,0,9:3,64:2,9:772.029:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10616968 . aagagaagag . . . END=10616977;RU=aagag;PERIOD=5;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:2,2:2-2,2-2:65,68,0,0:2,65:NULL:852.421:318.314,73.8073:0,0:-1,-1,-1:0 0/0:140:1:2,2:2-2,2-2:76,64,0,0:2,76:NULL:875.44:301.344,62.7839:0,0:-1,-1,-1:0 0/0:140:1:2,2:2-2,2-2:71,69,0,0:2,71:NULL:890.065:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10621527 . tatgtatgtatg . . . END=10621538;RU=tatg;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:177:1:3,3:3-3,3-3:93,69,0,15:3,93:2,15:1100.56:318.314,73.8073:0,0:-1,-1,-1:0 0/0:177:1:3,3:3-3,3-3:97,62,0,18:3,97:2,18:1081.41:301.344,62.7839:0,0:-1,-1,-1:0 0/0:185:1:3,3:3-3,3-3:98,72,0,15:3,98:2,15:1149.88:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10624372 . ggaggaggagga . . . END=10624383;RU=gga;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:155:1:4,4:4-4,4-4:66,75,0,14:4,66:3,14:1030.78:318.314,73.8073:0,0:-1,-1,-1:0 0/0:147:1:4,4:4-4,4-4:81,54,0,11:4,81:3,11:895.471:301.344,62.7839:0,0:-1,-1,-1:0 0/0:131:1:4,4:4-4,4-4:74,51,0,6:4,74:3,6:803.622:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10627498 . aataaataaataaataaata aataaataaataaataaataaata . . END=10627517;RU=aata;PERIOD=4;REF=5;GRID=2,9;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,6.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/1:159:1:5,6:5-5,6-6:51,64,0,44:5,29|6,22:2,2|3,6|4,21|5,15:1147.99:318.314,73.8073:0,0:-1,-1,-1:1 0/1:128:1:5,6:5-5,6-6:55,39,0,34:5,28|6,27:2,2|3,9|4,13|5,10:864.747:301.344,62.7839:0,0:-1,-1,-1:1 0/0:137:1:5,5:5-5,5-5:59,55,0,23:5,59:2,2|3,3|4,18:906.453:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10629672 . tttctttc . . . END=10629679;RU=tttc;PERIOD=4;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:2,2:2-2,2-2:36,57,0,0:2,36:NULL:649.529:318.314,73.8073:0,0:-1,-1,-1:0 0/0:97:1:2,2:2-2,2-2:47,50,0,0:2,47:NULL:630.153:301.344,62.7839:0,0:-1,-1,-1:0 0/0:113:1:2,2:2-2,2-2:60,53,0,0:2,60:NULL:715.138:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10632405 . actcactcactc . . . END=10632416;RU=actc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:128:1:3,3:3-3,3-3:60,66,0,2:3,60:2,2:837.723:318.314,73.8073:0,0:-1,-1,-1:0 0/0:128:1:3,3:3-3,3-3:69,52,0,7:3,69:2,7:790.916:301.344,62.7839:0,0:-1,-1,-1:0 0/0:160:1:3,3:3-3,3-3:80,66,0,14:3,80:2,14:1014.21:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10634228 . aattaattaattaattaattaattaatt aattaattaattaattaattaatt,aattaattaattaattaattaattaattaatt . . END=10634255;RU=aatt;PERIOD=4;REF=7;GRID=3,11;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=6.0,8.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 1/0:66:0.896212:6,7:6-7,7-7:27,34,0,5:6,6|7,19|8,2:2,1|3,1|4,3:467.138:318.314,73.8073:0.495841,0:-1,-1,-1:0.5 0/2:29:0.915312:7,8:7-7,7-8:20,4,0,5:7,15|8,5:3,2|4,2|5,1:172.066:301.344,62.7839:0,0.486863:-1,-1,-1:1.5 1/0:64:1:6,7:6-6,7-7:24,32,0,8:6,10|7,14:2,3|3,2|4,1|6,2:451.212:305.271,63.0724:0.139319,0:-1,-1,-1:0.5 +chr21 10635924 . tatatatatatata . . . END=10635937;RU=ta;PERIOD=2;REF=7;GRID=3,15;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=7.0,7.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:70:0.999927:7,7:7-7,7-7:24,43,0,2:7,22|8,2:6,2:494.042:318.314,73.8073:0.0990099,0.0990099:-1,-1,-1:0 0/0:59:1:7,7:7-7,7-7:28,29,0,2:7,28:4,1|7,1:383.415:301.344,62.7839:0,0:-1,-1,-1:0 0/0:112:1:7,7:7-12,7-12:51,57,0,2:6,2|7,49:6,2:726.962:305.271,63.0724:0.975134,0.975134:-1,-1,-1:0 +chr21 10639268 . ttttattttatttta . . . END=10639282;RU=tttta;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:142:1:3,3:3-3,3-3:75,48,0,19:3,75:2,19:877.735:318.314,73.8073:0,0:-1,-1,-1:0 0/0:131:1:3,3:3-3,3-3:67,50,0,14:3,67:2,14:817.003:301.344,62.7839:0,0:-1,-1,-1:0 0/0:150:1:3,3:3-3,3-3:76,51,0,23:3,76:2,22|3,1:932.576:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10861528 . tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg . . END=10861563;RU=tg;PERIOD=2;REF=18;GRID=1,29;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=18.0,26.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 3/3:42:0.0289169:26,26:18-28,18-28:0,29,0,13:NULL:5,1|7,1|8,1|11,1|14,1|15,1|17,2|18,1|23,2|24,1|26,1:351.913:318.314,73.8073:3.38628,3.38628:-1,-1,-1:2 1/2:25:0.032284:20,24:8-26,13-26:0,18,0,7:NULL:8,1|12,1|17,1|19,2|20,1|24,1:209.408:301.344,62.7839:4.62807,2.87217:-1,-1,-1:1 3/3:54:0.0581838:26,26:17-26,17-26:0,32,0,22:NULL:5,2|6,1|7,2|9,1|10,2|11,1|12,2|16,1|17,2|19,2|22,1|23,1|24,1|25,2|26,1:449.633:305.271,63.0724:2.67697,2.67697:-1,-1,-1:2 +chr21 10862116 . aaataaataaat . . . END=10862127;RU=aaat;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:94:1:3,3:3-3,3-3:53,34,0,7:3,53:2,7:565.871:318.314,73.8073:0,0:-1,-1,-1:0 0/0:64:1:3,3:3-3,3-3:43,16,0,5:3,43:2,5:357.338:301.344,62.7839:0,0:-1,-1,-1:0 0/0:128:1:3,3:3-3,3-3:74,41,0,13:3,74:2,13:767.981:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10868844 . tttatttattta . . . END=10868855;RU=ttta;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:92:1:3,3:3-3,3-3:34,49,0,9:3,34:2,9:632.455:318.314,73.8073:0,0:-1,-1,-1:0 0/0:85:1:3,3:3-3,3-3:44,33,0,8:3,44:2,8:521.834:301.344,62.7839:0,0:-1,-1,-1:0 0/0:127:1:3,3:3-3,3-3:46,64,0,17:3,46:2,17:857.35:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10873878 . tttatttatttattta . . . END=10873893;RU=ttta;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:111:1:4,4:4-4,4-4:44,48,0,19:4,44:2,2|3,17:732.941:318.314,73.8073:0,0:-1,-1,-1:0 0/0:48:1:4,4:4-4,4-4:25,17,0,6:4,25:3,6:300.203:301.344,62.7839:0,0:-1,-1,-1:0 0/0:140:1:4,4:4-4,4-4:60,60,0,20:4,60:2,1|3,19:917.754:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10880831 . aggcaggcaggc . . . END=10880842;RU=aggc;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:81:1:3,3:3-3,3-3:38,39,0,4:3,38:2,4:530.583:318.314,73.8073:0,0:-1,-1,-1:0 0/0:48:1:3,3:3-3,3-3:22,25,0,1:3,22:2,1:322.101:301.344,62.7839:0,0:-1,-1,-1:0 0/0:83:1:3,3:3-3,3-3:42,37,0,4:3,42:2,4:528.697:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10881968 . aaattaaattaaatt . . . END=10881982;RU=aaatt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:50:1:3,3:3-3,3-3:25,23,0,2:3,25:2,2:323.288:318.314,73.8073:0,0:-1,-1,-1:0 0/0:37:0.999987:3,3:3-3,3-3:19,17,0,1:3,19:2,1:230.931:301.344,62.7839:0,0:-1,-1,-1:0 0/0:84:1:3,3:3-3,3-3:31,48,0,5:3,31:2,5:591.639:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10882325 . atagatagatag . . . END=10882336;RU=atag;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:72:1:3,3:3-3,3-3:43,19,0,10:3,43:2,10:424.938:318.314,73.8073:0,0:-1,-1,-1:0 0/0:33:1.00001:3,3:3-3,3-3:21,9,0,3:3,21:2,3:191.423:301.344,62.7839:0,0:-1,-1,-1:0 0/0:102:1:3,3:3-3,3-3:64,26,0,12:3,64:2,12:583.255:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10888630 . gagaaagagaaa . . . END=10888641;RU=gagaaa;PERIOD=6;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:105:1:2,2:2-2,2-2:44,61,0,0:2,44:NULL:711.388:318.314,73.8073:0,0:-1,-1,-1:0 0/0:71:1:2,2:2-2,2-2:41,30,0,0:2,41:NULL:429.204:301.344,62.7839:0,0:-1,-1,-1:0 0/0:112:1:2,2:2-2,2-2:66,46,0,0:2,66:NULL:676.05:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10888705 . aggaggaggagg . . . END=10888716;RU=agg;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:133:1:4,4:3-4,3-4:48,76,0,9:3,5|4,43:3,9:933.353:318.314,73.8073:0.169767,0.169767:-1,-1,-1:0 0/0:88:0.743006:4,4:3-4,3-4:26,60,0,2:3,5|4,21:3,1|4,1:647.711:301.344,62.7839:0.475866,0.475866:-1,-1,-1:0 0/0:153:1:4,4:4-4,4-4:55,89,0,8:4,55:3,8:1037.66:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10891582 . tattattattat tattattat,tattattattattattattattat,tattattattattattattattattattat . . END=10891593;RU=tat;PERIOD=3;REF=4;GRID=1,13;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,10.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/3:84:0.670844:4,10:4-4,3-10:33,46,0,5:2,2|3,8|4,23:3,1|4,1|8,2|10,1:639.782:318.314,73.8073:0,3.29193:-1,-1,-1:1.14286 1/0:57:1:3,4:3-3,4-4:40,15,0,2:2,3|3,15|4,22:3,1|4,1:350.198:301.344,62.7839:0,0:-1,-1,-1:0.142857 0/2:134:0.673705:4,8:4-4,3-8:58,68,0,7:3,7|4,51:3,3|4,1|5,1|8,2:958.948:305.271,63.0724:0,2.07009:-1,-1,-1:0.857143 +chr21 10893903 . aaaacaaaacaaaac . . . END=10893917;RU=aaaac;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:198:1:3,3:3-3,3-3:107,77,0,14:3,107:2,14:1218.45:318.314,73.8073:0,0:-1,-1,-1:0 0/0:151:1:3,3:3-3,3-3:80,63,0,8:3,80:2,8:934.057:301.344,62.7839:0,0:-1,-1,-1:0 0/0:230:1:3,3:3-3,3-3:123,89,0,18:3,123:2,18:1415.28:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10894808 . cttccttc . . . END=10894815;RU=cttc;PERIOD=4;REF=2;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:77:1:2,2:2-2,2-2:41,34,0,2:2,41:2,2:476.92:318.314,73.8073:0,0:-1,-1,-1:0 0/0:45:1:2,2:2-2,2-2:20,24,0,1:2,20:2,1:304.373:301.344,62.7839:0,0:-1,-1,-1:0 0/0:112:1:2,2:2-3,2-3:50,59,0,3:2,50:2,2|3,1:756.59:305.271,63.0724:0.419363,0.419363:-1,-1,-1:0 +chr21 10898044 . ttcagttcagttcag . . . END=10898058;RU=ttcag;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:100:1:3,3:3-3,3-3:49,43,0,8:3,49:2,8:648.047:318.314,73.8073:0,0:-1,-1,-1:0 0/0:58:1:3,3:3-3,3-3:28,25,0,5:3,28:2,5:374.197:301.344,62.7839:0,0:-1,-1,-1:0 0/0:108:1:3,3:3-3,3-3:52,45,0,11:3,52:2,11:690.361:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10902624 . agaaagaaagaa . . . END=10902635;RU=agaa;PERIOD=4;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:3,3:3-3,3-3:46,41,0,6:3,46:2,6:590.205:318.314,73.8073:0,0:-1,-1,-1:0 0/0:70:1:3,3:3-3,3-3:33,32,0,5:3,33:2,5:456.251:301.344,62.7839:0,0:-1,-1,-1:0 0/0:151:1:3,3:3-3,3-3:79,61,0,11:3,79:2,11:952.19:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10906774 . aacatatataaacatatata . . . END=10906793;RU=aacatatata;PERIOD=10;REF=2;GRID=1,5;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=2.0,2.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:64:1:2,2:2-2,2-2:28,36,0,0:2,28:NULL:429.03:318.314,73.8073:0,0:-1,-1,-1:0 0/0:32:0.999759:2,2:2-2,2-2:16,16,0,0:2,16:NULL:211.897:301.344,62.7839:0,0:-1,-1,-1:0 0/0:104:1:2,2:2-2,2-2:53,51,0,0:2,53:NULL:678.533:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10910936 . cttttcttttctttt . . . END=10910950;RU=ctttt;PERIOD=5;REF=3;GRID=1,6;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=3.0,3.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:77:0.999998:3,3:3-3,3-3:22,36,0,19:3,22:2,19:539.008:318.314,73.8073:0,0:-1,-1,-1:0 0/0:54:1:3,3:3-3,3-3:30,17,0,7:3,30:2,7:324.721:301.344,62.7839:0,0:-1,-1,-1:0 0/0:106:1:3,3:3-3,3-3:55,39,0,12:3,55:2,12:660.083:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10916040 . tcctcctcctcc . . . END=10916051;RU=tcc;PERIOD=3;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:97:1:4,4:4-4,4-4:45,47,0,5:4,45:3,5:634.907:318.314,73.8073:0,0:-1,-1,-1:0 0/0:51:1:4,4:4-4,4-4:31,17,0,3:4,31:3,3:302.816:301.344,62.7839:0,0:-1,-1,-1:0 0/0:118:1:4,4:4-4,4-4:57,59,0,2:4,57:3,2:759.833:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10917405 . aaaacaaaacaaaacaaaacaaaac . . . END=10917429;RU=aaaac;PERIOD=5;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:80:1:5,5:5-5,5-5:35,28,0,17:5,35:2,1|3,2|4,14:513.802:318.314,73.8073:0,0:-1,-1,-1:0 0/0:67:1:5,5:5-5,5-5:29,27,0,11:5,29:3,1|4,10:440.155:301.344,62.7839:0,0:-1,-1,-1:0 0/0:149:1:5,5:5-5,5-5:61,58,0,30:5,61:2,2|3,13|4,15:976.005:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10918476 . tttgttttgttttgttttgttttgt . . . END=10918500;RU=tttgt;PERIOD=5;REF=5;GRID=2,8;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=5.0,5.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:107:1:5,5:5-5,5-5:48,37,0,22:5,48:2,1|3,12|4,9:684.217:318.314,73.8073:0,0:-1,-1,-1:0 0/0:59:0.999801:5,5:5-5,5-5:16,26,0,17:5,16:2,1|3,4|4,12:411.265:301.344,62.7839:0,0:-1,-1,-1:0 0/0:156:1:5,5:5-5,5-5:55,59,0,42:5,55:2,1|3,14|4,27:1055.8:305.271,63.0724:0,0:-1,-1,-1:0 +chr21 10919624 . acacacacacacacacacacacacacac acacacacacacacacacacacacacacacac . . END=10919651;RU=ac;PERIOD=2;REF=14;GRID=10,19;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=14.0,16.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:117:0.999966:14,14:14-16,14-16:39,51,0,27:13,2|14,37:5,1|6,2|7,3|8,4|9,3|10,3|11,5|12,4|13,1|16,1:857.02:318.314,73.8073:0.885129,0.885129:-1,-1,-1:0 0/0:64:0.999978:14,14:14-14,14-14:27,24,0,13:13,2|14,25:5,2|6,1|7,2|8,1|9,3|10,2|11,1|13,1:434.283:301.344,62.7839:0,0:-1,-1,-1:0 0/1:143:1:14,16:14-14,14-16:52,59,0,32:13,4|14,34|15,2|16,12:4,2|5,3|6,2|7,4|8,2|9,3|10,3|11,3|12,6|13,3|15,1:1041.53:305.271,63.0724:0,0.339533:-1,-1,-1:1 +chr21 10920272 . tttgtttgtttgtttg . . . END=10920287;RU=tttg;PERIOD=4;REF=4;GRID=1,7;STUTTERUP=0.05;STUTTERDOWN=0.05;STUTTERP=0.9;EXPTHRESH=-1;DSLEN=4.0,4.0 GT:DP:Q:REPCN:REPCI:RC:ENCLREADS:FLNKREADS:ML:INS:STDERR:QEXP:TRDS 0/0:93:1:4,4:4-4,4-4:44,40,0,9:4,44:2,1|3,8:599.056:318.314,73.8073:0,0:-1,-1,-1:0 0/0:74:1:4,4:4-4,4-4:35,30,0,9:4,35:2,1|3,8:468.807:301.344,62.7839:0,0:-1,-1,-1:0 0/0:141:1:4,4:4-4,4-4:53,66,0,22:4,53:2,6|3,16:949.417:305.271,63.0724:0,0:-1,-1,-1:0 diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_beagle.vcf b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_beagle.vcf new file mode 100644 index 00000000..c15a72d0 --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_beagle.vcf @@ -0,0 +1,200 @@ +##fileformat=VCFv4.2 +##FILTER= +##filedate=20220812 +##source="beagle.22Jul22.46e.jar" +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##contig= +##command-AnnotaTR=/Users/melissagymrek/workspace/TRTools/trtools/annotaTR/annotaTR.py --vcf trtools/testsupport/sample_vcfs/beagle/1kg_snpstr_21_first_100k_second_50_STRs_imputed.vcf.gz --vcftype hipstr --ref-panel trtools/testsupport/sample_vcfs/beagle/1kg_snpstr_21_first_100k_first_50_annotated.vcf.gz --dosages bestguess_norm --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_beagle +##FORMAT= +##INFO= +##preimputation_source="beagle.08Jun17.d8b.jar (version 4.1)" +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00155 HG00157 HG00158 HG00159 HG00160 HG00171 HG00173 HG00174 HG00176 HG00177 HG00178 HG00179 HG00180 HG00181 HG00182 HG00183 HG00185 HG00186 HG00187 HG00188 HG00189 HG00190 HG00231 HG00232 HG00233 HG00234 HG00235 HG00236 HG00237 HG00238 HG00239 HG00240 HG00242 HG00243 HG00244 HG00245 HG00246 HG00250 HG00251 HG00252 HG00253 HG00254 HG00255 HG00256 HG00257 HG00258 HG00259 HG00260 HG00261 HG00262 +21 15449764 STR_869490 AAAAAAAAAAAGAAAAAAAAA AAAAAAAAAAAAGAAAAAAAAA,AAAAAAAAAAAGAAAAAAAAAAA . PASS DR2=0,0.95;AF=0,0.1033;END=15449784;IMP;START=15449764;PERIOD=1;DSLEN=21.0,23.0 GT:DS:TRDS 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|2:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|2:0,0.95:1 0|0:0,0:0 0|0:0,0:0 0|2:0,1.01:1 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|2:0,1.02:1 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 2|0:0,0.97:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0.03:0 0|0:0,0.1:0 0|2:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0.02:0 0|0:0,0:0 0|0:0,0.23:0 0|0:0,0:0 0|2:0,1:1 0|0:0,0:0 0|0:0,0:0 +21 15453829 STR_869495 TTTTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA TATTATTATTATTATTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTAGTA,TATTATTATTATTGGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTATTAGTAGTAGTAGTA,TATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TATTATTATTATTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA,TTTTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA . PASS DR2=0,0.8,0,0,0,0,0,0.96,0.55,0.86,0.75,0,0,0,0,0.9,0.92,0,0.98,0.83,0,0,0.85,0,0,0,0,0,0,0,0,0.56,0;AF=0,0.0131,0,0,0,0,0,0.0104,0.0075,0.3192,0.0937,0,0,0,0,0.0858,0.0482,0,0.0102,0.0244,0,0,0.2285,0,0,0,0,0,0,0,0,0.0366,0;END=15453875;IMP;START=15453831;PERIOD=3;DSLEN=11.0,18.0 GT:DS:TRDS 23|10:0,0,0,0,0,0,0,0,0,0.98,0.02,0,0,0,0,0,0,0,0,0.01,0,0,0.99,0,0,0,0,0,0,0,0,0,0:1.28571 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 19|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0.86,0,0,0,0,0,0,0,0,0.14,0:1.42857 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 23|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 10|32:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0.98,0:1.42857 23|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.94,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 10|11:0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 23|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83,0,0,0,0,0,0,0,0,0.17,0:1.42857 0|10:0,0.05,0,0,0,0,0,0,0,0.95,0,0,0,0,0,0.04,0,0,0,0,0,0,0.08,0,0,0,0,0,0,0,0,0.03,0:1.14286 23|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86,0,0,0,0,0,0,0,0,0.14,0:1.42857 10|10:0,0.24,0,0,0,0,0,0.02,0.04,1.66,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0:1.14286 10|23:0,0,0,0,0,0,0,0,0,0.88,0.12,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 10|17:0,0,0,0,0,0,0,0.01,0.02,0.83,0.03,0,0,0,0,0.01,0.87,0,0.01,0,0,0,0.2,0,0,0,0,0,0,0,0,0,0:1.14286 11|10:0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|23:0,0,0,0,0,0,0,0,0,0,0.23,0,0,0,0,0,0,0,0,0,0,0,0.59,0,0,0,0,0,0,0,0,0.17,0:1.28571 17|10:0,0,0,0,0,0,0,0,0,0.86,0.14,0,0,0,0,0.01,0.98,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 23|10:0,0,0,0,0,0,0,0,0,1.19,0,0,0,0,0,0,0,0,0,0,0,0,0.79,0,0,0,0,0,0,0,0,0.03,0:1.28571 23|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99,0,0,0,0,0,0,0,0,0.01,0:1.42857 0|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5,0,0,0,0,0,0,0,0,0.5,0:1.28571 10|10:0,0,0,0,0,0,0,0,0,1.51,0.49,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 10|23:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 20|16:0,0,0,0,0,0,0,0,0.02,0.19,0.29,0,0,0,0,1,0,0,0,0.51,0,0,0,0,0,0,0,0,0,0,0,0,0:1.28571 10|17:0,0,0,0,0,0,0,0,0.01,0.79,0.02,0,0,0,0,0.14,0.98,0,0,0,0,0,0.06,0,0,0,0,0,0,0,0,0,0:1.14286 17|10:0,0,0,0,0,0,0,0,0.01,1.05,0.02,0,0,0,0,0,0.87,0,0,0.01,0,0,0.03,0,0,0,0,0,0,0,0,0,0:1.14286 23|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03,0,0,0,0,0,0,0,0,0,0:1.28571 16|23:0,0,0,0,0,0,0,0,0,0.09,0,0,0,0,0,0.82,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 11|11:0,0,0,0,0,0,0,0,0,0.07,1.93,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|16:0,0,0,0,0,0,0,0,0,0,0.04,0,0,0,0,0.74,0.04,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0:1.14286 10|0:0,0,0,0,0,0,0,0,0,0.78,0.22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 20|20:0,0,0,0,0,0,0,0,0,0.12,0,0,0,0,0,0,0,0,0,1.88,0,0,0,0,0,0,0,0,0,0,0,0,0:1.42857 10|23:0,0,0,0,0,0,0,0,0,1,0.06,0,0,0,0,0.05,0,0,0,0,0,0,0.86,0,0,0,0,0,0,0,0,0.04,0:1.28571 16|10:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 23|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98,0,0,0,0,0,0,0,0,0.02,0:1.42857 0|9:0,0.01,0,0,0,0,0,0,0.64,0.06,0.33,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 16|23:0,0.01,0,0,0,0,0,0.01,0.01,0.03,0.01,0,0,0,0,0.84,0,0,0,0,0,0,1.07,0,0,0,0,0,0,0,0,0,0:1.28571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 23|11:0,0,0,0,0,0,0,0,0.01,0.04,0.91,0,0,0,0,0.01,0,0,0,0,0,0,0.64,0,0,0,0,0,0,0,0,0.39,0:1.28571 32|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95,0,0,0,0,0,0,0,0,1.05,0:1.57143 10|0:0,0,0,0,0,0,0,0,0,0.58,0.01,0,0,0,0,0,0,0,0,0,0,0,0.44,0,0,0,0,0,0,0,0,0,0:1.14286 23|10:0,0.01,0,0,0,0,0,0.01,0,0.99,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.28571 10|10:0,0,0,0,0,0,0,0,0,1.84,0.04,0,0,0,0,0,0.07,0,0.01,0,0,0,0.02,0,0,0,0,0,0,0,0,0.01,0:1.14286 10|10:0,0,0,0,0,0,0,0,0,1.44,0.56,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 10|17:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 11|10:0,0,0,0,0,0,0,0,0,0.93,0.98,0,0,0,0,0,0,0,0,0.03,0,0,0.05,0,0,0,0,0,0,0,0,0,0:1.14286 16|11:0,0,0,0,0,0,0,0,0,0.08,0.92,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 +21 15466377 STR_869502 AATAAATAAATAAATAAATAAATAAATAAATAAATTAATTAATTAATTTAATTCTG AATAAATAAATAAATAAATAAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATTAATTAATTAATTAATTAATTAATTAATTAAATTCTG,AATAAATTAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATAAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATTAATTAATTAATTACTTTAATTCTG,AATAAATAAATAAATAAATTAATTAATTAATTAATTAATTTAATTCTA,AATAAATAAATAAATAAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATTAATTAATTAATTAATTACTTTAATTCTG,AATAAATAAATAAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATTAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATAAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATTAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATAAATAAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATAAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATAAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATAAATTAATTAATTAATTAATTAATTAATTAATTTAATTCTG,AATAAATAAATAAATTAATTAATTAATTAATTAATTAATTAATTAATTTAATTCTG . PASS DR2=0,0,0,0,0,0.98,0.67,0.64,0,0.03,0.83,0,0.77,0,0,0.66,0,0,0.76,0.83,0.93,0.01,0;AF=0,0,0,0,0,0.2759,0.0222,0.0648,0,0.002,0.3392,0,0.0495,0,0,0.0303,0,0,0.0229,0.1026,0.0643,0.0001,0;END=15466429;IMP;START=15466377;PERIOD=4;DSLEN=10.25,13.25 GT:DS:TRDS 6|11:0,0,0,0,0,1,0,0,0,0,0.79,0,0.21,0,0,0,0,0,0,0,0,0,0:0.333333 21|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17,0,0,0,0.81,1.02,0,0:2 11|6:0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 11|8:0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 6|20:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 11|6:0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 6|20:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0.21,0,0,0.01,0.76,0.01,0,0:1 11|11:0,0,0,0,0,0,0,0.01,0,0,1.99,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 0|11:0,0,0,0,0,0,0,0.07,0,0.02,0.93,0,0,0,0,0,0,0,0,0.11,0,0,0:1.33333 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 7|11:0,0,0,0,0,0,0.69,0.16,0,0,1.15,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 11|6:0,0,0,0,0,1,0,0,0,0,0.9,0,0.1,0,0,0,0,0,0,0,0,0,0:0.333333 11|20:0,0,0,0,0,0.29,0,0.21,0,0.06,0.76,0,0.04,0,0,0.02,0,0,0,0.57,0.04,0,0:1.33333 13|11:0,0,0,0,0,0,0,0.05,0,0,0.94,0,1,0,0,0,0,0,0,0,0,0,0:0.666667 21|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1 20|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0.02,0,0,0.02,0.94,0,0,0:1.33333 6|11:0,0,0,0,0,1,0,0.01,0,0,0.99,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 21|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1 13|11:0,0,0,0,0,0,0,0.01,0,0,1.48,0,0.51,0,0,0,0,0,0,0,0,0,0:0.666667 21|8:0,0,0,0,0,0,0,0.84,0,0,0.16,0,0,0,0,0,0,0,0,0,1,0,0:1.33333 7|6:0,0,0,0,0,1,0.42,0.18,0,0,0.4,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 11|19:0,0,0,0,0,0,0,0.03,0,0,0.97,0,0,0,0,0.01,0,0,0.89,0.07,0.02,0,0:1.33333 11|20:0,0,0,0,0,0,0,0.02,0,0,0.98,0,0,0,0,0,0,0,0.05,0.95,0,0,0:1.33333 20|11:0,0,0,0,0,0.11,0,0.08,0,0.03,1.26,0,0,0,0,0.02,0,0,0,0.47,0.02,0,0:1.33333 6|16:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0.42,0,0,0,0,0.18,0.01,0:0.666667 20|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0.33,0,0,0,0.6,0.07,0,0:1 11|13:0,0,0,0,0,0,0,0,0,0.01,0.67,0,1.3,0,0,0,0,0,0,0,0.02,0,0:0.666667 8|11:0,0,0,0,0,0,0.04,0.55,0,0,1.4,0,0,0,0,0,0,0,0,0,0.01,0,0:0.666667 20|19:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87,0.91,0.03,0,0:2 11|21:0,0,0,0,0,0,0,0,0,0.01,0.98,0,0,0,0,0,0,0,0,0,1,0,0:1.33333 11|8:0,0,0,0,0,0,0.13,0.98,0,0,0.89,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 11|11:0,0,0,0,0,0,0.01,0.02,0,0,1.97,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 13|11:0,0,0,0,0,0,0,0.23,0,0,0.77,0,1,0,0,0,0,0,0,0,0,0,0:0.666667 11|6:0,0,0,0,0,1,0,0.02,0,0,0.98,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 20|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.33333 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 16|11:0,0,0,0,0,0,0,0.44,0,0,0.56,0,0,0,0,0.83,0,0,0,0.02,0.03,0,0:1 19|6:0,0,0,0,0,1.19,0,0.12,0,0,0.18,0,0.02,0,0,0,0,0,0.45,0.04,0,0,0:1 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1.66667 6|11:0,0,0,0,0,1,0,0.03,0,0,0.97,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 6|21:0,0,0,0,0,1,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0.99,0,0:1 6|7:0,0,0,0,0,1,0.91,0.01,0,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 11|11:0,0,0,0,0,0,0,0.4,0,0,1.6,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 11|11:0,0,0,0,0,0,0,0,0,0,1.95,0,0.05,0,0,0,0,0,0,0,0,0,0:0.666667 11|20:0,0,0,0,0,0,0,0.01,0,0,0.99,0,0,0,0,0,0,0,0,1,0,0,0:1.33333 11|11:0,0,0,0,0,0,0,0.01,0,0,1.97,0,0.02,0,0,0,0,0,0,0,0,0,0:0.666667 20|13:0,0,0,0,0,0,0,0,0,0.04,0.26,0,0.7,0,0,0,0,0,0,1,0,0,0:1.33333 +21 15479065 STR_869517 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0.97,0.93,0.94,0.01,0;AF=0,0,0.0821,0.1447,0.3008,0.0004,0;END=15479095;IMP;START=15479065;PERIOD=2;DSLEN=10.5,18.5 GT:DS:TRDS 0|4:0,0,0,0.93,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 3|0:0,0,1,0,0,0,0:1 5|0:0,0,0,0,0.98,0.02,0:1.375 0|0:0,0,0,0,0,0,0:1.25 4|3:0,0,1,1,0,0,0:0.875 0|0:0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0:1.5 3|0:0,0,1,0,0,0,0:1 0|5:0,0,0,0,1.06,0.01,0:1.375 0|0:0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0:1.5 4|0:0,0,0,1,0,0,0:1.125 5|0:0,0,0.07,0.07,1.08,0,0:1.375 4|5:0,0,0,1,1,0,0:1.25 0|0:0,0,0,0,0,0,0:1.25 0|5:0,0,0,0.18,1.02,0,0:1.375 0|5:0,0,0,0,1,0,0:1.375 3|0:0,0,1,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1.25 4|5:0,0,0,0.95,1,0,0:1.25 0|5:0,0,0.01,0,0.99,0,0:1.375 5|0:0,0,0,0,0.99,0.01,0:1.375 5|0:0,0,0,0,1,0,0:1.375 5|0:0,0,0,0,1,0,0:1.375 0|4:0,0,0.02,1.02,0.47,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 0|0:0,0,0,0,0.16,0,0:1.25 4|0:0,0,0,1.44,0,0,0:1.125 5|4:0,0,0,0.83,0.99,0.01,0:1.25 0|0:0,0,0,0,0,0,0:1.25 4|0:0,0,0,0.96,0,0,0:1.125 5|5:0,0,0,0,2,0,0:1.5 4|5:0,0,0,1,1,0,0:1.25 3|5:0,0,1,0,1,0,0:1.125 5|0:0,0,0,0,1,0,0:1.375 0|5:0,0,0,0,1,0,0:1.375 3|3:0,0,2,0,0,0,0:0.75 0|5:0,0,0,0,1.01,0,0:1.375 0|0:0,0,0.09,0.04,0.3,0,0:1.25 0|0:0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0:1.375 0|0:0,0,0,0,0,0,0:1.25 3|0:0,0,1.02,0.04,0.02,0,0:1 0|5:0,0,0,0,1,0,0:1.375 5|5:0,0,0,0,2,0,0:1.5 4|4:0,0,0,2,0,0,0:1 5|0:0,0,0,0,1,0,0:1.375 5|4:0,0,0,1,1,0,0:1.25 0|4:0,0,0,1,0,0,0:1.125 +21 15482659 STR_869518 ATTTTTTTATTTATTTGTTTATTTTAA ATTTTTTTATTTATTT,ATTTTTTTATTTATTTATTTTAA,ATTTATTTATTTATTTGTTTATTTTAA . PASS DR2=0,0.92,0;AF=0,0.1668,0;END=15482682;IMP;START=15482659;PERIOD=4;DSLEN=3.25,6.0 GT:DS:TRDS 0|2:0,0.93,0:1.63636 0|0:0,0,0:2 2|0:0,1,0:1.63636 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,1,0:1.63636 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,1,0:1.63636 0|0:0,0.11,0:2 2|0:0,1,0:1.63636 0|0:0,0,0:2 0|0:0,0.49,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,0.94,0:1.63636 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|2:0,1.05,0:1.63636 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,1.26,0:1.63636 0|2:0,0.8,0:1.63636 0|0:0,0,0:2 2|0:0,0.95,0:1.63636 0|0:0,0,0:2 2|0:0,1,0:1.63636 2|0:0,1,0:1.63636 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.09,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.05,0:2 0|0:0,0,0:2 0|0:0,0,0:2 2|2:0,2,0:1.27273 0|0:0,0,0:2 0|2:0,1,0:1.63636 0|2:0,1,0:1.63636 +21 15483173 STR_869519 TCTATCTATCTATCATCTATCTCTCTC TCTATCTATCATCTATCTCTCTA,TCTATCTATCATCTATCTCTCTC,TCTATCTATCTATCATCTATCTCTCTA . PASS DR2=0,0.94,0;AF=0,0.0214,0;END=15483194;IMP;START=15483173;PERIOD=4;DSLEN=4.5,5.5 GT:DS:TRDS 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,1,0:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.04,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.02,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 2|0:0,1,0:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.05,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0.02,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 +21 15486497 STR_869521 TCAAAAAAAAAAAAAAAA TCAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAAAAA . PASS DR2=0,0.98,0,0.9,0,0;AF=0,0.2754,0,0.1471,0,0;END=15486514;IMP;START=15486499;PERIOD=1;DSLEN=14.0,19.0 GT:DS:TRDS 2|4:0,1,0,0.91,0,0:0.8 0|0:0,0,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.6 4|2:0,1,0,1,0,0:0.8 2|0:0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:0.8 4|2:0,1,0,1,0,0:0.8 0|0:0,0.23,0,0.08,0,0:0.8 4|0:0,0,0,1,0,0:1 0|2:0,1,0,0,0,0:0.6 4|0:0,0,0,0.94,0,0:1 2|0:0,1,0,0,0,0:0.6 2|2:0,2,0,0,0,0:0.4 0|2:0,1,0,0,0,0:0.6 4|0:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0:0.8 0|0:0,0,0,0,0,0:0.8 0|4:0,0.1,0,1.04,0,0:1 2|0:0,1.02,0,0,0,0:0.6 0|2:0,1,0,0,0,0:0.6 4|4:0,0,0,1.53,0,0:1.2 0|4:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.8 4|0:0,0,0,0.78,0,0:1 0|0:0,0,0,0,0,0:0.8 4|0:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:0.8 0|2:0,1.18,0,0.03,0,0:0.6 0|0:0,0,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.6 2|2:0,2,0,0,0,0:0.4 2|0:0,1,0,0.1,0,0:0.6 2|0:0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0:0.8 4|4:0,0,0,1.65,0,0:1.2 0|0:0,0,0,0,0,0:0.8 0|4:0,0,0,1,0,0:1 0|4:0,0,0,0.65,0,0:1 +21 15488331 STR_869522 GTGTGTGGGAGTGTGTGGGTGTGTGTG GTGTGTGGGTGTGTGTG . PASS DR2=0.97;AF=0.2965;END=15488357;IMP;START=15488331;PERIOD=2;DSLEN=8.5,13.5 GT:DS:TRDS 1|0:1:1 0|0:0:2 1|1:2:0 0|0:0:2 1|0:1:1 0|1:1:1 1|0:1:1 0|0:0:2 1|1:2:0 0|0:0:2 1|1:2:0 0|0:0:2 0|1:1:1 0|0:0.27:2 0|0:0:2 0|1:1:1 0|0:0:2 1|0:1:1 1|1:2:0 0|1:1:1 0|0:0:2 0|0:0:2 0|1:1:1 0|0:0:2 0|0:0:2 0|0:0.12:2 1|0:1.02:1 0|1:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 1|0:1:1 0|1:1:1 0|0:0:2 1|1:2:0 0|0:0:2 0|1:1.23:1 0|0:0:2 1|0:1:1 1|1:2:0 1|0:1:1 1|0:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 +21 15497315 STR_869525 GAAAAAAAAAAA GAAAAAAAAAA,GGAAAAAAAAAA,GAAAAAAAAAAAA . PASS DR2=0.99,0.89,0.64;AF=0.1011,0.1265,0.0177;END=15497326;IMP;START=15497316;PERIOD=1;DSLEN=10.0,12.0 GT:DS:TRDS 0|2:0,0.89,0:1 0|0:0,0.01,0:1 1|0:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 2|1:1,1,0:0.5 0|0:0,0.02,0:1 0|3:0,0,1:1.5 1|0:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 2|0:0,1.02,0:1 0|0:0.07,0.03,0:1 2|0:0,1,0:1 0|0:0,0,0:1 2|0:0,0.96,0:1 0|0:0,0,0.04:1 1|0:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0.25,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0.22:1 0|0:0,0,0:1 0|2:0.01,1.01,0.12:1 0|0:0,0,0:1 0|0:0,0,0:1 2|0:0,1.14,0:1 0|2:0,0.52,0:1 0|0:0,0.1,0:1 2|0:0,0.67,0:1 0|1:1,0,0.01:0.5 2|0:0,1,0:1 1|0:1,0,0:0.5 0|0:0,0,0:1 0|1:1,0,0:0.5 1|1:2,0,0:0 0|0:0,0,0:1 0|0:0.03,0.02,0:1 0|0:0,0,0:1 0|0:0,0,0.25:1 0|0:0,0,0:1 1|0:1,0.02,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 2|2:0,2,0:1 0|0:0,0,0:1 0|2:0,1,0.14:1 0|0:0,0,0:1 +21 15502118 STR_869527 TGTTTTTTTTTTTAAAAAAAAAAAAA TGTTTTTTTTTTTTTAAAAAA,TGTTTTCTTTTTTTAAAAAAAAAA,TGTTTTTTTTTTTAAAAAAAAAAA,TGTTTTTTTTTTTTAAAAAAAAAA,TGTTTTTTTTTTAAAAAAAAAAAAA,TGTTTTTTTTTTTAAAAAAAAAAAA,TGTTTTTTTTTTTTAAAAAAAAAAA,TGTTTTTTTTTTTTTAAAAAAAAAA,TGTTTTTTTTTTTTTTAAAAAAAAA,TGTTTTTTTTTTAAAAAAAAAAAAAA,TGTTTTTTTTTTTTAAAAAAAAAAAA,TGTTTTTTTTTTTTTAAAAAAAAAAA,TGTTTTTTTTTTTTTTAAAAAAAAAA,TGTTTTTTTTTTTTTTTAAAAAAAAA,TGTTTTTTTTTTTAAAAAAAAAAAAAA,TGTTTTTTTTTTTTAAAAAAAAAAAAA,TGTTTTTTTTTTTTTAAAAAAAAAAAA,TGTTTTTTTTTTTTTTTAAAAAAAAAA,TGTTTTTTTTTTTTTAAAAAAAAAAAAA,TGTTTTTTTTTTTTTTAAAAAAAAAAAA,TGTTTTTTTTTTTTTTTAAAAAAAAAAA,TTTTTTTTTTTTTTTTAAAAAAAAAAAA . PASS DR2=0,0,0,0,0,0,1,0,0,0,0.91,0,0.91,0.37,0,0,0,0,0,1,0,0;AF=0,0,0,0,0,0,0.1,0,0,0,0.1521,0,0.2914,0.0278,0,0,0,0,0,0.2108,0,0;END=15502143;IMP;START=15502120;PERIOD=1;DSLEN=19.0,26.0 GT:DS:TRDS 20|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.42857 7|20:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.57143 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.42857 20|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.71429 11|7:0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:1.28571 20|0:0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,1,0,0:1.71429 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.42857 7|20:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.57143 0|13:0,0,0,0,0,0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,0,0,0:1.42857 20|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:2 13|13:0,0,0,0,0,0,0,0,0,0,0,0,1.69,0.31,0,0,0,0,0,0,0,0:1.42857 11|0:0,0,0,0,0,0,0,0,0,0,1.03,0,0,0,0,0,0,0,0,0,0,0:1.42857 13|13:0,0,0,0,0,0,0,0,0,0,0,0,1.65,0.35,0,0,0,0,0,0,0,0:1.42857 11|13:0,0,0,0,0,0,0,0,0,0,1,0,0.99,0.01,0,0,0,0,0,0,0,0:1.42857 0|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.71429 11|13:0,0,0,0,0,0,0,0,0,0,0.98,0,1,0,0,0,0,0,0,0,0,0:1.42857 20|13:0,0,0,0,0,0,0,0,0,0,0,0,0.93,0.07,0,0,0,0,0,1,0,0:1.71429 7|20:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.57143 0|20:0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,1,0,0:1.71429 11|13:0,0,0,0,0,0,0,0,0,0,0.73,0,1,0,0,0,0,0,0,0,0,0:1.42857 0|13:0,0,0,0,0,0,0,0,0,0,0,0,0.98,0.02,0,0,0,0,0,0,0,0:1.42857 13|20:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0:1.71429 13|0:0,0,0,0,0,0,0,0,0,0,0,0,0.83,0.17,0,0,0,0,0,0,0,0:1.42857 13|0:0,0,0,0,0,0,0,0,0,0,0.02,0,1,0,0,0,0,0,0,0,0,0:1.42857 13|11:0,0,0,0,0,0,0,0,0,0,1,0,0.86,0.14,0,0,0,0,0,0,0,0:1.42857 20|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:2 0|20:0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,1,0,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,1.83,0,0,0,0,0,0,0,0,0,0,0:1.42857 13|11:0,0,0,0,0,0,0,0,0,0,0.73,0,0.58,0.42,0,0,0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0,0,0,0,0,0.12,0,0,0,0,0,0,0,0,0,0,0:1.42857 11|11:0,0,0,0,0,0,0,0,0,0,1.61,0,0,0,0,0,0,0,0,0,0,0:1.42857 13|7:0,0,0,0,0,0,1,0,0,0,0,0,0.99,0.01,0,0,0,0,0,0,0,0:1.28571 11|13:0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0:1.42857 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0.25,0.75,0,0,0,0,0,0,0,0:1.28571 13|20:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0:1.71429 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.28571 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|13:0,0,0,0,0,0,0,0,0,0,0,0,0.84,0.07,0,0,0,0,0,0.08,0,0:1.42857 13|20:0,0,0,0,0,0,0,0,0,0,0,0,0.67,0.33,0,0,0,0,0,1,0,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.42857 20|13:0,0,0,0,0,0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,1,0,0:1.71429 20|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:2 7|0:0,0,0,0,0,0,1,0,0,0,0.11,0,0,0,0,0,0,0,0,0,0,0:1.28571 20|13:0,0,0,0,0,0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,1,0,0:1.71429 13|13:0,0,0,0,0,0,0,0,0,0,0,0,1.96,0.04,0,0,0,0,0,0,0,0:1.42857 11|11:0,0,0,0,0,0,0,0,0,0,1.99,0,0,0,0,0,0,0,0,0,0,0:1.42857 13|0:0,0,0,0,0,0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,0,0,0:1.42857 13|11:0,0,0,0,0,0,0,0,0,0,1,0,0.94,0.06,0,0,0,0,0,0,0,0:1.42857 0|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.42857 +21 15513708 STR_869535 TTTTTTTTTTTTT TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT . PASS DR2=0.99,0.98,0,0;AF=0.3618,0.4151,0,0;END=15513720;IMP;START=15513708;PERIOD=1;DSLEN=10.0,14.0 GT:DS:TRDS 0|1:1,0,0,0:0.75 1|1:2,0,0,0:0 2|0:0,1,0,0:1 2|2:0,2,0,0:0.5 0|1:1,0,0,0:0.75 1|2:1,1,0,0:0.25 0|1:1,0,0,0:0.75 2|2:0,2,0,0:0.5 2|0:0,1,0,0:1 1|2:1,1,0,0:0.25 0|0:0,0,0,0:1.5 2|2:0,2,0,0:0.5 1|1:2,0,0,0:0 2|2:0.09,1.85,0,0:0.5 1|2:1,1,0,0:0.25 1|0:1,0,0,0:0.75 1|2:1.03,0.92,0,0:0.25 0|2:0,1,0,0:1 2|0:0,1,0,0:1 1|0:1,0,0,0:0.75 1|2:1,1,0,0:0.25 1|2:1,1,0,0:0.25 2|0:0,1,0,0:1 2|1:1,1,0,0:0.25 2|1:1,1,0,0:0.25 2|1:1.04,0.91,0,0:0.25 0|0:0,0,0,0:1.5 1|0:1,0,0,0:0.75 1|1:2,0,0,0:0 2|1:1,1,0,0:0.25 1|1:2,0,0,0:0 1|1:2,0,0,0:0 2|2:0,2,0,0:0.5 1|2:1,1,0,0:0.25 2|2:0,2,0,0:0.5 2|0:0,1,0,0:1 1|2:1,1,0,0:0.25 2|2:0,2,0,0:0.5 1|2:1,1,0,0:0.25 2|0:0.02,0.83,0,0:1 1|0:1,0,0,0:0.75 0|2:0,1,0,0:1 0|0:0,0,0,0:1.5 2|1:1,1,0,0:0.25 0|2:0,1,0,0:1 2|2:0,2,0,0:0.5 1|1:2,0,0,0:0 2|1:1,1,0,0:0.25 2|1:1,1,0,0:0.25 1|2:1,1,0,0:0.25 +21 15513949 STR_869536 TTGTTGTTGTTTTGTTGT TTGTTGTTGTTTTGT . 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PASS DR2=0,0.97,0,0.03,0;AF=0,0.2274,0,0.0013,0;END=15569375;IMP;START=15569348;PERIOD=2;DSLEN=12.0,16.0 GT:DS:TRDS 2|0:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 2|0:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 2|2:0,2,0,0,0:0.5 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0.22,0,0.08,0:1 0|0:0,0,0,0,0:1 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 2|0:0,1,0,0,0:0.75 0|2:0,1,0,0,0:0.75 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 2|0:0,0.52,0,0.03,0:0.75 2|2:0,2,0,0,0:0.5 0|2:0,1,0,0.02,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|2:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 2|2:0,2,0,0,0:0.5 0|2:0,1,0,0,0:0.75 2|0:0,1,0,0,0:0.75 2|2:0,2,0,0,0:0.5 0|0:0,0,0,0,0:1 2|0:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 +21 15585324 STR_869568 ATATATATATAT ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATAT,ATATATATATATATATCCATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATATAT . PASS DR2=0.98,0,0,0,0,0,0,0,0;AF=0.2296,0,0,0,0,0,0,0,0;END=15585335;IMP;START=15585324;PERIOD=2;DSLEN=6.0,21.0 GT:DS:TRDS 1|0:0.99,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 1|0:0.99,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 1|1:1.98,0,0,0,0,0,0,0,0:0.533333 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0.18,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|1:0.98,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 1|0:1,0,0,0,0,0,0,0,0:0.266667 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0.01,0,0,0,0,0,0,0,0:0 1|0:0.8,0,0,0,0,0,0,0,0:0.266667 1|1:2,0,0,0,0,0,0,0,0:0.533333 0|1:0.99,0,0,0,0,0,0,0,0:0.266667 0|0:0.01,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0.01,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 1|1:1.99,0,0,0,0,0,0,0,0:0.533333 0|1:1,0,0,0,0,0,0,0,0:0.266667 1|0:1,0,0,0,0,0,0,0,0:0.266667 1|1:2,0,0,0,0,0,0,0,0:0.533333 0|0:0,0,0,0,0,0,0,0,0:0 1|0:1,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0.01,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0:0 +21 15587131 STR_869571 AAAAAAAAAAA AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA . PASS DR2=0,0.98,0;AF=0,0.2296,0;END=15587141;IMP;START=15587131;PERIOD=1;DSLEN=9.0,12.0 GT:DS:TRDS 2|0:0,0.99,0:1 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 2|0:0,0.99,0:1 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 2|2:0,1.98,0:0.666667 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0.18,0:1.33333 0|0:0,0,0:1.33333 0|2:0,0.98,0:1 0|0:0,0,0:1.33333 2|0:0,1,0:1 0|2:0,1,0:1 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0.01,0:1.33333 2|0:0,0.8,0:1 2|2:0,2,0:0.666667 0|2:0,0.99,0:1 0|0:0,0.01,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0.01,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 2|2:0,1.99,0:0.666667 0|2:0,1,0:1 2|0:0,1,0:1 2|2:0,2,0:0.666667 0|0:0,0,0:1.33333 2|0:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0.01,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 +21 15598938 STR_869573 CTCAAAAAAAAAAAAAAAACAAACAAAAA CTAAAAAAAAAAAAAAACAAACAAAAA,CTCAAAAAAAAAAAAAACAAACAAAAA,CTAAAAAAAAAAAAAAAACAAACAAAAA,CTCAAAAAAAAAAAAAAACAAACAAAAA,CAAAAAAAAAAAAAAAAAACAAACAAAAA,CTAAAAAAAAAAAAAAAAACAAACAAAAA,CTAAAAAAAAAAAAAAAAAACAAACAAAAA,CTCAAAAAAAAAAAAAAAAACAAACAAAAA,CTCAAAAAAAAAAAAAAAAAACAAACAAAAA . PASS DR2=0,1,0,0.98,0,0,0.9,0.97,0;AF=0,0.2008,0,0.2832,0,0,0.0113,0.1313,0;END=15598966;IMP;START=15598941;PERIOD=1;DSLEN=24.0,28.0 GT:DS:TRDS 4|2:0,1,0,1,0,0,0,0,0:0.25 8|0:0,0,0,0,0,0,0.13,0.87,0:1.25 0|2:0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,1,0:1.25 0|0:0,0,0,0,0,0,0,0,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 4|4:0,0,0,2,0,0,0,0,0:0.5 2|4:0,1,0,1,0,0,0,0,0:0.25 4|8:0,0,0,1,0,0,0,1,0:1 4|2:0,1,0,1,0,0,0,0,0:0.25 0|4:0,0,0,1,0,0,0,0,0:0.75 0|4:0,0,0,1,0,0,0,0,0:0.75 4|4:0,0.06,0,1.72,0,0,0,0.05,0:0.5 8|4:0,0,0,1,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0:0.5 4|8:0,0,0,1,0,0,0,1,0:1 0|4:0,0,0,1,0,0,0,0,0:0.75 2|8:0,1,0,0,0,0,0,1,0:0.75 0|0:0,0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0.01,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0:1 8|2:0,1,0,0,0,0,0,1,0:0.75 8|4:0,0,0,1,0,0,0,1,0:1 2|2:0,2,0,0,0,0,0,0,0:0 0|2:0,1,0,0,0,0,0,0,0:0.5 4|8:0,0,0,1,0,0,0,1,0:1 0|7:0,0,0,0,0,0,1,0,0:1.25 2|0:0,1,0,0,0,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0:0.75 0|4:0,0,0,1,0,0,0,0,0:0.75 4|0:0,0,0,1,0,0,0,0,0:0.75 0|8:0,0,0,0,0,0,0,0.99,0:1.25 2|2:0,2,0,0,0,0,0,0,0:0 4|0:0,0,0,1,0,0,0,0,0:0.75 2|4:0,1,0,1,0,0,0,0,0:0.25 4|2:0,1,0,1,0,0,0,0,0:0.25 4|4:0,0,0,2,0,0,0,0,0:0.5 4|2:0,1,0,1,0,0,0,0,0:0.25 0|4:0,0.01,0,1,0,0,0,0,0:0.75 2|4:0,1.01,0,0.59,0,0,0,0.22,0:0.25 0|0:0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 4|2:0,1,0,1,0,0,0,0,0:0.25 4|0:0,0,0,1,0,0,0,0,0:0.75 8|4:0,0,0,1,0,0,0,1,0:1 +21 15605012 STR_869574 TTTTTTTTTTTTTTTT TTTTTTTTTTTTTTT,TCTTTTTTTTTTTTTT,TCTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTT,TCTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT . PASS DR2=0,0,1,0,0.92,0,0.92,0,0,0;AF=0,0,0.2,0,0.1424,0,0.1456,0,0,0;END=15605027;IMP;START=15605012;PERIOD=1;DSLEN=15.0,21.0 GT:DS:TRDS 5|3:0,0,1,0,1,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|3:0,0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 7|5:0,0,0,0,1,0,1,0,0,0:0.833333 3|5:0,0,1,0,0.99,0,0.01,0,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0,0:0.666667 5|3:0,0,1,0,0.7,0,0.3,0,0,0:0.666667 0|7:0,0,0,0,0,0,1,0,0,0:0.666667 0|7:0,0,0,0,0,0,1,0,0,0:0.666667 7|5:0,0,0,0,0.94,0,1.06,0,0,0:0.833333 0|7:0,0,0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 3|0:0,0,1,0,0,0,0,0,0,0:0.5 7|0:0,0,0,0,0,0,1,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|3:0,0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 3|0:0,0,1,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|3:0,0,1,0,0,0,0,0,0,0:0.5 0|5:0,0,0,0,1,0,0,0,0,0:0.5 3|3:0,0,2,0,0,0,0,0,0,0:0.666667 0|3:0,0,1,0,0,0,0,0,0,0:0.5 5|0:0,0,0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 3|0:0,0,1,0,0,0,0,0,0,0:0.5 0|7:0,0,0,0,0,0,1,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0,0,0:0.5 7|0:0,0,0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 3|3:0,0,2,0,0,0,0,0,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0,0:0.666667 3|5:0,0,1,0,1,0,0,0,0,0:0.666667 7|3:0,0,1,0,0,0,1,0,0,0:0.833333 5|7:0,0,0,0,1.48,0,0.52,0,0,0:0.833333 5|3:0,0,1,0,1,0,0,0,0,0:0.666667 0|7:0,0,0,0,0,0,1,0,0,0:0.666667 3|5:0,0,1,0,0.41,0,0.39,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0:0.333333 7|3:0,0,1,0,0,0,1,0,0,0:0.833333 5|0:0,0,0,0,0.77,0,0.23,0,0,0:0.5 0|5:0,0,0,0,0.96,0,0.04,0,0,0:0.5 +21 15615545 STR_869576 CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT CGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0.96,0,0,0.89,0,0.88,0.89,0,0.93,0,0,0,0.82,0,0,0.68,0.9,0.67,0,0.87,0,0;AF=0,0,0.0597,0,0,0.1357,0,0.0861,0.0376,0,0.2438,0,0,0,0.1037,0,0,0.0297,0.0403,0.0201,0,0.0613,0,0;END=15615583;IMP;START=15615546;PERIOD=2;DSLEN=14.0,30.0 GT:DS:TRDS 6|11:0,0,0,0,0,0.96,0,0.04,0,0,0.78,0,0,0,0.22,0,0,0,0,0,0,0,0,0:0.9375 22|3:0,0,1,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0.02,0.02,0,0.95,0,0:1.125 15|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:1.1875 11|3:0,0,1,0,0,0,0,0,0,0,0.99,0,0,0,0.01,0,0,0,0,0,0,0,0,0:0.8125 15|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:1.1875 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.625 20|19:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0:1.5625 0|8:0,0,0,0,0,0.26,0,0.72,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.75 9|8:0,0,0,0,0,0.01,0,0.99,0.94,0,0.06,0,0,0,0,0,0,0,0,0,0,0,0,0:0.9375 0|22:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.03,0,0,0.97,0,0:1.1875 6|11:0,0,0,0,0,1,0,0,0,0,0.52,0,0,0,0.48,0,0,0,0,0,0,0,0,0:0.9375 15|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.9375 0|8:0,0,0.11,0,0,0,0,0.95,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.75 0|6:0,0,0,0,0,0.92,0,0.06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.6875 19|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23,0,0,0,0.77,0,0,0,0,0:1.0625 6|3:0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.625 11|15:0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:1.1875 11|15:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0.73,0,0,0.27,0,0,0,0,0,0:1.1875 0|22:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0.01,0,0.98,0,0:1.1875 11|8:0,0,0,0,0,0,0,1,0,0,0.99,0,0,0,0,0,0,0.01,0,0,0,0,0,0:1 11|22:0,0,0,0,0,0,0,0,0,0,0.78,0,0,0,0.22,0,0,0,0,0,0,1,0,0:1.4375 6|15:0,0,0,0,0,1,0,0,0,0,0.02,0,0,0,0.98,0,0,0,0,0,0,0,0,0:1 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:1.125 15|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:1.1875 11|3:0,0,0.86,0,0,0.14,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.8125 6|0:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.01,0,0:0.6875 22|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0.01,0.01,0,0.98,0,0:1.4375 20|6:0,0,0,0,0,0.99,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0.49,0,0.49,0,0:1.1875 11|9:0,0,0,0,0,0,0,0,0.78,0,1.21,0,0,0,0.01,0,0,0,0,0,0,0,0,0:1.0625 11|11:0,0,0,0,0,0,0,0,0,0,1.94,0,0,0,0,0,0,0.06,0,0,0,0,0,0:1.125 6|19:0,0,0,0,0,0.69,0,0.31,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0:1.125 6|19:0,0,0,0,0,0.94,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0:1.125 11|15:0,0,0,0,0,0,0,0,0,0,1.01,0,0,0,0.75,0,0,0.24,0,0,0,0,0,0:1.1875 11|0:0,0,0,0,0,0,0,0,0,0,0.98,0,0,0,0,0,0,0.02,0,0,0,0,0,0:0.875 18|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.125 0|15:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95,0,0,0.05,0,0,0,0,0,0:0.9375 3|22:0,0,1,0,0,0,0,0,0,0,0.11,0,0,0,0,0,0,0.05,0,0.3,0,0.55,0,0:1.125 9|9:0,0,0,0,0,0,0,0,1.93,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|15:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61,0,0,0.39,0,0,0,0,0,0:0.9375 11|6:0,0,0,0,0,0.58,0,0.42,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.9375 8|11:0,0,0,0,0,0,0,0.97,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1 8|6:0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.8125 8|11:0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1 6|0:0,0,0,0,0,0.94,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.6875 11|22:0,0,0,0,0,0.18,0,0.09,0,0,1.04,0,0,0,0.04,0,0,0.01,0.19,0.15,0,0.2,0,0:1.4375 18|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12,0,0,0.88,0,0,0,0,0,0:1 3|0:0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.01,0,0,0,0:0.5625 0|11:0,0,0,0,0,0.01,0,0.01,0.11,0,0.86,0,0,0,0.01,0,0,0,0,0,0,0,0,0:0.875 6|0:0,0,0,0,0,0.99,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.6875 11|6:0,0,0,0,0,0.95,0,0.01,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.9375 +21 15623117 STR_869578 CTTTTTTTTTTTTTTTTTG CTTTTTTTTTTTTTTTG,CATTTTTTTTTTTTTTTG,CTTTTTTTTTTTTTTTTG,CTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTCTTG,CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTG,CTTTTTTTTTTTTTTTTTTTG,CTTTTTTTTTTTTTTTTTTTT . PASS DR2=0,0,1,0,0,0.74,0.81,1,0;AF=0,0,0.2499,0,0,0.0484,0.0257,0.0903,0;END=15623134;IMP;START=15623118;PERIOD=1;DSLEN=15.0,19.0 GT:DS:TRDS 0|3:0,0,1,0,0,0,0,0,0:0.75 3|8:0,0,1,0,0,0,0,1,0:1.25 0|0:0,0,0,0,0,0,0,0,0:1 0|6:0,0,0,0,0,1,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0.18,0,0,0:1 3|0:0,0,1,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0:1 6|0:0,0,0.01,0,0,0.54,0,0,0:1 0|0:0,0,0,0,0,0,0.01,0,0:1 6|0:0,0,0,0,0,1,0,0,0:1 8|8:0,0,0,0,0,0,0,2,0:2 7|0:0,0,0,0,0,0,0.91,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0:0.75 7|0:0,0,0,0,0,0,0.85,0,0:1.25 3|3:0,0,2,0,0,0,0,0,0:0.5 8|0:0,0,0,0,0,0,0.03,1,0:1.5 0|0:0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,1,0:1.5 8|3:0,0,1,0,0,0,0,1,0:1.25 3|0:0,0,1,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0.03,0,0,0:1 3|3:0,0,2,0,0,0,0,0,0:0.5 0|3:0,0,1,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0:0.75 6|3:0,0,1,0,0,0.62,0,0,0:0.75 0|0:0,0,0,0,0,0.02,0.02,0,0:1 7|0:0,0,0,0,0,0,0.75,0,0:1.25 0|0:0,0,0,0,0,0.18,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 8|3:0,0,1,0,0,0,0,1,0:1.25 3|3:0,0,2,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 6|8:0,0,0,0,0,0.91,0,1,0:1.5 0|3:0,0,0.98,0,0,0,0,0.02,0:0.75 0|0:0,0,0,0,0,0,0,0,0:1 8|3:0,0,0.98,0,0,0,0,1.02,0:1.25 0|0:0,0,0,0,0,0.25,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1 3|0:0,0,1.01,0,0,0.13,0.01,0,0:0.75 +21 15626391 STR_869580 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0,0.92,0.8,0,0,0.77,0,0,0.81,0,0.71,0,0.07,0.66,0.75,0,0,0,0.77,0.56,0,0,0,0;AF=0,0,0,0,0.0208,0.1265,0,0,0.0653,0,0,0.1411,0,0.1313,0,0.0019,0.0277,0.0432,0,0,0,0.0424,0.0061,0,0,0,0;END=15626440;IMP;START=15626391;PERIOD=2;DSLEN=16.0,33.0 GT:DS:TRDS 0|22:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0:1.41176 14|0:0,0,0,0,0,0,0,0,0,0,0,0.24,0,0.76,0,0,0,0,0,0,0,0,0,0,0,0,0:1.17647 14|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0.56,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0,0:0.941176 0|12:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11765 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 18|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:1.41176 0|0:0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 17|0:0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0.65,0,0,0,0,0.34,0.01,0,0,0,0:1.29412 12|14:0,0,0,0,0,0,0,0,0,0,0,1.37,0,0.62,0,0.01,0,0,0,0,0,0,0,0,0,0,0:1.23529 0|23:0,0,0,0,0,0.04,0,0,0.31,0,0,0,0,0,0,0,0,0.41,0,0,0,0,0.59,0,0,0,0:1.41176 14|12:0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.23529 12|5:0,0,0,0,0.97,0.05,0,0,0.22,0,0,0.51,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.941176 0|6:0,0,0,0,0,0.75,0,0,0.01,0,0,0.18,0,0.01,0,0.01,0,0,0,0,0,0.02,0.02,0,0,0,0:0.941176 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11765 9|0:0,0,0,0,0,0,0,0,1,0,0,0,0,0.18,0,0,0,0,0,0,0,0,0,0,0,0,0:1 6|14:0,0,0,0,0,0.99,0,0,0.01,0,0,0,0,0.73,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 6|12:0,0,0,0,0,1,0,0,0,0,0,0.92,0,0.08,0,0,0,0,0,0,0,0,0,0,0,0,0:1 9|0:0,0,0,0,0,0.05,0,0,0.95,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 22|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0.09,0,0,0,0,0.91,0,0,0,0,0:1.52941 12|0:0,0,0,0,0,0,0,0,0.06,0,0,1,0,0.22,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11765 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.941176 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.5,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 6|0:0,0,0,0,0,0.92,0,0,0.08,0,0,0.14,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.941176 12|12:0,0,0,0,0,0,0,0,0,0,0,1.87,0,0.13,0,0,0,0,0,0,0,0,0,0,0,0,0:1.17647 14|6:0,0,0,0,0,0.98,0,0,0.02,0,0,0.38,0,0.62,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|0:0,0,0,0,0,0.46,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 18|17:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81,1,0,0,0,0.19,0,0,0,0,0:1.52941 0|22:0,0,0,0,0,0.35,0,0,0.12,0,0,0,0,0.01,0,0,0,0,0,0,0,1,0,0,0,0,0:1.41176 0|14:0,0,0,0,0,0.19,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.17647 14|12:0,0,0,0,0,0,0,0,0,0,0,1.03,0,0.4,0,0.02,0,0.29,0,0,0,0,0,0,0,0,0:1.23529 6|14:0,0,0,0,0,0.62,0,0,0.12,0,0,0,0,0.7,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 9|12:0,0,0,0,0,0.08,0,0,0.91,0,0,0.51,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|14:0,0,0,0,0,0,0,0,0,0,0,0,0,0.93,0,0,0,0,0,0,0,0,0,0,0,0,0:1.17647 0|14:0,0,0,0,0,0,0,0,0,0,0,0.35,0,0.43,0,0.1,0,0.13,0,0,0,0,0,0,0,0,0:1.17647 17|17:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22,0,0,0,0,0.78,0,0,0,0,0:1.52941 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11765 9|6:0,0,0,0,0,0.61,0,0,0.93,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.882353 5|14:0,0,0,0,0.98,0.02,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|9:0,0,0,0,0,0,0,0,0.51,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.941176 18|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.89,0,0,0,0,0,0,0,0,0:1.29412 6|14:0,0,0,0,0,0.99,0,0,0.02,0,0,0.39,0,0.59,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.09,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|14:0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.48,0,0.06,0,0.44,0,0,0,0,0,0,0,0,0:1.17647 0|0:0,0,0,0,0,0.25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 0|0:0,0,0,0,0,0.02,0,0,0.23,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 12|6:0,0,0,0,0.13,0.26,0,0,0.02,0,0,1.18,0,0.02,0,0,0,0.16,0,0,0,0.01,0,0,0,0,0:1 +21 15626889 STR_869581 CGTCATATATATAATATATATATAT CGTCATATATATCATATATATATAT,CATCATATATATAATATATATATATAT,CGTCATATATATAATATATATATATAT,CGTCATATATATAATATATATATATATAT . PASS DR2=0,0,0.99,0;AF=0,0,0.2607,0;END=15626913;IMP;START=15626893;PERIOD=2;DSLEN=10.5,12.5 GT:DS:TRDS 0|3:0,0,1,0:0.5 3|0:0,0,1,0:0.5 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 0|0:0,0,0,0:0 3|3:0,0,2,0:1 0|0:0,0,0,0:0 3|0:0,0,1,0:0.5 0|3:0,0,1,0:0.5 0|3:0,0,1,0:0.5 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0.04,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 0|0:0,0,0,0:0 3|3:0,0,2,0:1 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 3|0:0,0,1,0:0.5 0|0:0,0,0,0:0 3|3:0,0,2,0:1 0|3:0,0,1,0:0.5 0|3:0,0,1,0:0.5 0|3:0,0,1.05,0:0.5 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 3|3:0,0,2,0:1 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 0|0:0,0,0,0:0 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 0|3:0,0,0.96,0:0.5 0|0:0,0,0,0:0 0|3:0,0,1,0:0.5 0|0:0,0,0,0:0 0|0:0,0,0,0:0 3|0:0,0,1.02,0:0.5 +21 15628818 STR_869582 CGCTTTTTTTTTTTGAGG CGCTTTTTTTTTTTTGAGG,CACTTTTTTTTTTTTTGAGA,CACTTTTTTTTTTTTTTGAGA,CACTTTTTTTTTTTTTTTGAGA,CACTTTTTTTTTTTTTTTGTGA,CACTTTTTTTTTTTTTTTTAGA,CACTTTTTTTTTTTTTTTTGAGA . PASS DR2=1,0,0.99,1,0,0,0;AF=0.09,0,0.1911,0.3404,0,0,0;END=15628831;IMP;START=15628821;PERIOD=1;DSLEN=11.0,16.0 GT:DS:TRDS 0|3:0,0,1,0,0,0,0:0.6 4|3:0,0,1,1,0,0,0:1.4 4|0:0,0,0,1,0,0,0:0.8 4|0:0,0,0,1,0,0,0:0.8 4|4:0,0,0,2,0,0,0:1.6 0|0:0,0,0,0,0,0,0:0 4|4:0,0,0,2,0,0,0:1.6 1|0:1,0,0,0,0,0,0:0.2 3|0:0,0,1,0,0,0,0:0.6 1|4:1,0,0,1,0,0,0:1 0|3:0,0,1,0,0,0,0:0.6 4|1:1,0,0,1,0,0,0:1 0|0:0,0,0,0,0,0,0:0 1|0:1,0,0.07,0.03,0,0,0:0.2 0|1:1,0,0,0,0,0,0:0.2 3|3:0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0:1.6 0|4:0,0,0,1,0,0,0:0.8 0|4:0,0,0,1,0,0,0:0.8 4|0:0,0,0,1,0,0,0:0.8 3|4:0,0,1,1,0,0,0:1.4 3|4:0,0,1,1,0,0,0:1.4 4|0:0,0,0,1,0,0,0:0.8 4|0:0,0,0,1,0,0,0:0.8 0|3:0,0,1,0,0,0,0:0.6 3|4:0,0,1,1,0,0,0:1.4 4|0:0,0,0,1,0,0,0:0.8 0|0:0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0:1.2 4|3:0,0,1,1,0,0,0:1.4 0|4:0,0,0,1,0,0,0:0.8 4|4:0,0,0,1.99,0,0,0:1.6 0|4:0,0,0,1,0,0,0:0.8 4|1:1,0,0,1,0,0,0:1 4|0:0,0,0,1,0,0,0:0.8 1|4:1,0,0,1,0,0,0:1 3|4:0,0,1,1,0,0,0:1.4 3|3:0,0,2,0,0,0,0:1.2 1|4:1,0,0,1,0,0,0:1 0|0:0,0,0,0,0,0,0:0 0|3:0,0,1,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0:0 0|3:0,0,1,0,0,0,0:0.6 0|4:0,0,0,1,0,0,0:0.8 4|0:0,0,0,1,0,0,0:0.8 3|4:0,0,1,1,0,0,0:1.4 1|0:1,0,0,0,0,0,0:0.2 0|0:0,0,0,0,0,0,0:0 4|0:0,0,0.05,1.03,0,0,0:0.8 +21 15631144 STR_869583 CAAAACAAAACAAAACAAACAAAA CAAAACAAAACAAAACAAAACAAAA,CAAAACAAAACAAAACAAAACAAAACAAAA . PASS DR2=0.98,0;AF=0.5343,0;END=15631167;IMP;START=15631144;PERIOD=5;DSLEN=4.8,6.0 GT:DS:TRDS 0|1:1,0:0.166667 1|1:2,0:0.333333 1|0:1,0:0.166667 1|0:1,0:0.166667 1|1:2,0:0.333333 0|0:0,0:0 1|1:2,0:0.333333 0|0:0,0:0 1|0:1,0:0.166667 0|1:1,0:0.166667 0|1:1,0:0.166667 1|0:1,0:0.166667 0|0:0,0:0 0|0:0.27,0:0 0|0:0,0:0 1|1:2,0:0.333333 1|1:2,0:0.333333 0|1:1,0:0.166667 0|1:1,0:0.166667 1|0:1,0:0.166667 1|1:2,0:0.333333 1|1:2,0:0.333333 1|0:1,0:0.166667 1|0:1,0:0.166667 0|1:1,0:0.166667 1|1:2,0:0.333333 1|0:1,0:0.166667 0|0:0,0:0 1|1:2,0:0.333333 1|1:2,0:0.333333 0|1:1,0:0.166667 1|1:1.99,0:0.333333 0|1:1,0:0.166667 1|0:1,0:0.166667 1|0:1,0:0.166667 0|1:1,0:0.166667 1|1:2,0:0.333333 1|1:2,0:0.333333 0|1:1,0:0.166667 0|0:0,0:0 0|1:1,0:0.166667 0|0:0,0:0 0|0:0,0:0 0|1:1,0:0.166667 0|1:0.96,0:0.166667 1|0:1,0:0.166667 1|1:2,0:0.333333 0|0:0,0:0 0|0:0,0:0 1|0:1.21,0:0.166667 +21 15640356 STR_869584 ATATATATATATATATATATATATA AAAAAATATATATATATATATA,AAAATATATATATATATATATA,AATATATATATATATATATATA,AAAAAAATATATATATATATATA,ATATATATATATATATATATATA,AAAAAAAAAATATATATATATATA,AAAAAAAATATATATATATATATA,AAAAAATATATATATATATATATA,AAAATATATATATATATATATATA,AAAAAAAAATATATATATATATATA,AAAAAAATATATATATATATATATA,AAAAATATATATATATATATATATA,AAATATATATATATATATATATATA,AAAAAAAATATATATATATATATATA,AAAAAATATATATATATATATATATA,AAAATATATATATATATATATATATA,AAATATATATATATATATATATATATA,ATATATATATATATATATATATATATA,AAAAAAAATATATATATATATATATATA,AAAAAATATATATATATATATATATATA,AAAATATATATATATATATATATATATA,AAAAATATATATATATATATATATATATA,AAATATATATATATATATATATATATATA,ATATATATATATATATATATATATATATA,AAAAAATATATATATATATATATATATATA,AAATATATATATATATATATATATATATATA . PASS DR2=0.9,0.9,0,0.87,0,0,0.91,0.94,0,0,0.73,0.92,0,0,0,0.76,0,0.19,0,0.92,0,0,1,0,0,0;AF=0.1245,0.0842,0,0.0364,0,0,0.2218,0.1142,0,0,0.0579,0.1534,0,0,0,0.0119,0,0.0021,0,0.0329,0,0,0.0902,0,0,0;END=15640380;IMP;START=15640356;PERIOD=2;DSLEN=11.0,15.5 GT:DS:TRDS 7|1:1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.222222 1|23:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.777778 12|7:0,0,0,0,0,0,0.99,0.01,0,0,0.17,0.83,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 12|2:0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 8|7:0,0,0,0,0,0,0.86,1,0,0,0.14,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 1|7:0.94,0,0,0.06,0,0,0.59,0,0,0,0.41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.222222 8|1:0.6,0.4,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.222222 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 11|8:0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 0|20:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 8|1:0.36,0.04,0,0.32,0,0,0.11,0.96,0,0,0.01,0.03,0,0,0,0,0,0,0,0.13,0,0,0.01,0,0,0:0.222222 7|8:0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 23|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.55556 12|12:0,0,0,0,0,0,0,0,0,0,0.02,1.98,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 7|12:0,0,0,0,0,0,0.99,0.01,0,0,0.42,0.58,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 20|1:0.94,0.06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.666667 12|11:0,0,0,0,0,0,0.02,0,0,0,0.98,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 1|1:1.99,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 23|12:0,0,0,0,0,0,0,0,0,0,0.01,0.97,0,0,0,0.01,0,0,0,0,0,0,1,0,0,0:1.11111 12|7:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 12|7:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 8|23:0,0,0,0,0,0,0.05,0.95,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 23|2:0.38,0.62,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.777778 1|7:1,0,0,0,0,0,0.72,0.28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.222222 7|7:0,0,0,0,0,0,1.98,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 4|1:1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.111111 12|1:1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 7|2:0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.222222 11|2:0,1,0,0,0,0,0,0,0,0,0.69,0.31,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 7|12:0,0,0,0,0,0,0.98,0,0,0,0.23,0.53,0,0,0,0.25,0,0,0,0,0,0,0,0,0,0:0.555556 12|8:0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 12|7:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 8|16:0,0,0,0,0,0,0,1,0,0,0,0.08,0,0,0,0.92,0,0,0,0,0,0,0,0,0,0:0.666667 23|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.11111 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 8|12:0,0,0,0,0,0,0,1,0,0,0.01,0.99,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0:0.555556 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 20|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.777778 11|7:0,0,0,0,0,0,1.07,0,0,0,0.93,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 11|8:0,0,0,0,0,0,0.25,0.99,0,0,0.76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.555556 0|23:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,1,0,0,0:1.11111 7|7:0,0.26,0,0,0,0,1.44,0.1,0,0,0,0,0,0,0,0,0,0.2,0,0,0,0,0,0,0,0:0.444444 12|0:0,0,0,0,0,0,0,0,0,0,0.01,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 23|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.777778 8|7:0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 7|7:0,0,0,0,0,0,1.97,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.444444 2|4:0.24,1.02,0,0.25,0,0,0.14,0.09,0,0,0.01,0.03,0,0,0,0,0,0,0,0.16,0,0,0.01,0,0,0:0.111111 +21 15643267 STR_869588 TGTGTGTGTGTGTATATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATAATATA TGTGTGTGTGTGTATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATACATATGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATACACACATATGTGTGTGTGTGTGTATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACATATGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACATATGTGTGTGTGTGTGTGTATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATACATATGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTATATATATATATATATACATATGTGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATACATATGTGTGTGTGTGTGTGTATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATACATATGTGTGTGTGTGTATATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTGTATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTATATATATATATATATATATATATATATATACATATGTGTGTGTGTGTGTATATATATATATAATATA,TGTGTGTGTGTGTGTATATATATATATATATATATATATACACATATGTGTGTGTGTGTGTATATATATATATATAATATA . PASS DR2=0,0,0,0.95,0,0,0,0.88,0.93,0.84,0,0,0,0,0,0.92,0,0.99,0,0.97,0,0,0.17,0,0,0,0;AF=0,0,0,0.1113,0,0,0,0.009,0.3092,0.0718,0,0,0,0,0,0.122,0,0.0894,0,0.2201,0,0,0.0036,0,0,0,0;END=15643335;IMP;START=15643267;PERIOD=2;DSLEN=33.5,40.5 GT:DS:TRDS 9|4:0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.428571 9|16:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.714286 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|8:0,0,0,0,0,0,0,0.89,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 9|9:0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 18|16:0,0,0,0,0,0,0,0,0.05,0.3,0,0,0,0,0,0.65,0,1,0,0,0,0,0,0,0,0,0:1 4|10:0,0,0,1,0,0,0,0,0.01,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.428571 18|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.857143 9|4:0,0,0,1,0,0,0,0,0.97,0.02,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0:0.428571 20|18:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:1.14286 0|20:0,0,0,0.01,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.714286 18|4:0,0,0,0.64,0,0,0,0,0.19,0.04,0,0,0,0,0,0.01,0,0.92,0,0.17,0,0,0.01,0,0,0,0:0.714286 16|18:0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0.98,0,1,0,0,0,0,0,0,0,0,0:1 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0:0.857143 20|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:1.14286 9|20:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|10:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0.95,0,0,0.05,0,0,0,0:0.857143 4|9:0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.428571 16|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0:1 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 9|16:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.714286 16|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.714286 9|9:0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 9|9:0,0,0,0,0,0,0,0,1.49,0.27,0,0,0,0,0,0.24,0,0,0,0,0,0,0,0,0,0,0:0.571429 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 20|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76,0,0,0.24,0,0,0,0:0.714286 10|9:0,0,0,0,0,0,0,0,1.15,0.85,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 20|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.857143 9|20:0,0,0,0,0,0,0,0,0.87,0.04,0,0,0,0,0,0.08,0,0,0,1,0,0,0,0,0,0,0:0.857143 20|18:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0.93,0,0,0.07,0,0,0,0:1.14286 20|16:0,0,0,0,0,0,0,0,0,0.08,0,0,0,0,0,0.92,0,0,0,1,0,0,0,0,0,0,0:1 18|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:1.14286 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 18|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:1.14286 9|10:0,0,0,0,0,0,0,0,0.99,1.01,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0:0.571429 20|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.714286 10|9:0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 10|9:0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 9|9:0,0,0,0,0,0,0,0,1.7,0.06,0,0,0,0,0,0.03,0,0.02,0,0,0,0,0,0,0,0,0:0.571429 20|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.714286 16|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.714286 18|10:0,0,0,0,0,0,0,0,0.26,0.49,0,0,0,0,0,0.25,0,1,0,0,0,0,0,0,0,0,0:0.857143 9|9:0,0,0,0,0,0,0,0,1.96,0.03,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0:0.571429 9|4:0,0,0,0.48,0,0,0,0,1.25,0,0,0,0,0,0,0.02,0,0,0,0.2,0,0,0,0,0,0,0:0.428571 +21 15649022 STR_869590 TGTCAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT TGTAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTT,TGTAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTGTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTTGTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTA,TGTCAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTA,TGTAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTA,TGTAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTGTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTA,TGTCAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTAAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTA,TGTCAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTTT,TTTCAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTT,TGTCAAAAAAAAAAAAAAAAAGTAAGTTTTTTTTTTTTTTTT . PASS DR2=0,0,0,0,0,0.93,0,0,0,0,0.88,0.98,0.96,0,0,0.97,0.75,0,0.84,0;AF=0,0,0,0,0,0.1121,0,0,0,0,0.026,0.0305,0.272,0,0,0.5011,0.0151,0,0.01,0;END=15649060;IMP;START=15649026;PERIOD=1;DSLEN=35.0,38.0 GT:DS:TRDS 16|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.666667 16|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 11|16:0,0,0,0,0,0,0,0,0,0,0.64,0,0.36,0,0,1,0,0,0,0:1 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.666667 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 6|16:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.666667 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 16|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.666667 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 6|12:0,0,0,0,0,0.55,0,0,0,0,0,1,0.26,0,0,0,0,0,0,0:0.333333 16|16:0,0,0,0,0,0.37,0,0,0,0,0,0.02,0.02,0,0,1.59,0,0,0,0:1.33333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.666667 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.666667 16|13:0,0,0,0,0,0,0,0,0,0,0.01,0,0.99,0,0,1,0,0,0,0:1 12|16:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0:1 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 6|16:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.666667 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.666667 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 11|16:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0:1 16|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0.98,0,0,0.02,0:1 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99,0,0,0.01,0:1.33333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 13|6:0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.333333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 13|16:0,0,0,0,0,0,0,0,0,0,0.01,0,0.99,0,0,1,0,0,0,0:1 16|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 16|13:0,0,0,0,0,0,0,0,0,0,0.01,0,0.99,0,0,1,0,0,0,0:1 13|17:0,0,0,0,0,0,0,0,0,0,0,0,1.01,0,0,0,0.99,0,0,0:1 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 16|11:0,0,0,0,0,0,0,0,0,0,0.95,0,0.05,0,0,1,0,0,0,0:1 19|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08,0,0,0.92,0:1.66667 12|6:0,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.333333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 13|13:0,0,0,0,0,0,0,0,0,0,0,0,1.52,0,0,0,0.36,0,0,0:0.666667 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84,0.16,0,0,0:1.33333 13|0:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.333333 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0:1 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0:1.33333 16|16:0,0,0,0,0,0.29,0,0,0,0,0,0.03,0.01,0,0,1.62,0,0,0.05,0:1.33333 +21 15649784 STR_869591 TTTTTTTTTTTTTTTT TTTTTTTTTTTTTTT,TTTATTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT . PASS DR2=0.98,0.93,0.93,0.92;AF=0.0305,0.1121,0.3441,0.167;END=15649799;IMP;START=15649784;PERIOD=1;DSLEN=15.0,18.0 GT:DS:TRDS 3|2:0,1,1,0:1 4|0:0,0,0,1:1.33333 0|3:0,0,1,0:1 0|0:0,0,0,0:0.666667 0|4:0,0,0,1:1.33333 0|0:0,0,0,0:0.666667 4|4:0,0,0,2:2 3|4:0,0,1.26,0.74:1.66667 2|3:0,1,1,0:1 3|4:0,0,1,1:1.66667 3|2:0,1,0.99,0.01:1 0|3:0,0,1,0:1 2|1:1,0.55,0,0:0.333333 3|3:0.02,0.37,1.46,0.13:1.33333 4|3:0,0,1.04,0.96:1.66667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1 1|4:1,0,0,1:1 0|3:0,0,1,0:1 2|4:0,1,0,1:1.33333 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|4:0,0,0,1:1.33333 4|3:0,0,1,1:1.66667 3|3:0,0,1.68,0.32:1.33333 2|2:0,2,0,0:0.666667 0|2:0,1,0,0:0.666667 3|4:0,0,1,1:1.66667 0|4:0,0,0,1:1.33333 3|0:0,0,0.92,0.08:1 0|3:0,0,1,0:1 0|4:0,0,0.04,0.96:1.33333 3|0:0,0,1,0:1 0|0:0,0,0,0:0.666667 2|2:0,2,0,0:0.666667 3|0:0,0,1,0:1 3|3:0,0,1.98,0.02:1.33333 1|2:1,1,0,0:0.333333 3|3:0,0,2,0:1.33333 3|3:0,0,2,0:1.33333 0|0:0,0,0,0:0.666667 3|3:0,0,1.56,0.28:1.33333 0|0:0,0,0,0:0.666667 0|4:0,0,0,1:1.33333 3|3:0,0,1.84,0.16:1.33333 3|3:0,0,1.99,0.01:1.33333 4|3:0.03,0.29,0.65,1.03:1.66667 +21 15658706 STR_869597 GAAAAAAAAAAAAAAAA GAAAAAAAAAAAAAAA,GGAAAAAAAAAAAAAAA,GAAAAAAAAAAAAAAAAA,GGAAAAAAAAAAAAAAAA,GGGAAAAAAAAAAAAAAA,GAAAAAAAAAAAAAAAAAA,GGGAAAAAAAAAAAAAAAAA . PASS DR2=1,0,0.99,0.95,0.82,1,0;AF=0.0903,0,0.1008,0.1795,0.0404,0.01,0;END=15658722;IMP;START=15658707;PERIOD=1;DSLEN=15.0,19.0 GT:DS:TRDS 0|3:0,0,1,0,0,0,0:0.75 5|1:1,0,0,0,1,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 0|6:0,0,0,0,0,1,0:1 0|4:0,0,0,1,0,0,0:0.75 0|0:0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0:1 0|0:0,0,0,0,0,0,0:0.5 4|0:0,0,0.04,0.96,0,0,0:0.75 0|4:0,0,0,0.77,0.23,0,0:0.75 0|3:0,0,1,0,0,0,0:0.75 0|0:0.03,0,0.02,0.02,0,0,0:0.5 3|4:0,0,1,1,0,0,0:1 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 1|1:2,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 4|4:0,0,0,1.5,0.5,0,0:1 0|0:0,0,0,0,0,0,0:0.5 3|5:0,0,1,0.01,0.99,0,0:1 1|0:1,0,0,0,0,0,0:0.25 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 0|1:1,0,0,0,0,0,0:0.25 1|4:1,0,0,0.77,0.23,0,0:0.5 5|0:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0,0:0.5 3|3:0,0,2,0,0,0,0:1 0|3:0,0,1,0,0,0,0:0.75 0|4:0,0,0,1,0,0,0:0.75 0|4:0,0,0,1,0,0,0:0.75 0|4:0,0,0,0.91,0.09,0,0:0.75 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0.02,0.01,0,0,0:0.5 1|4:1,0,0,1,0,0,0:0.5 3|3:0,0,2,0,0,0,0:1 0|0:0,0,0,0,0,0,0:0.5 4|0:0,0,0,1,0,0,0:0.75 4|3:0,0,1,1,0,0,0:1 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 4|1:1,0,0,1,0,0,0:0.5 0|4:0,0,0,1,0,0,0:0.75 0|0:0,0,0,0,0,0,0:0.5 1|4:1,0,0,1,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0:0.5 4|0:0,0,0,1,0,0,0:0.75 +21 15663702 STR_869600 ACTAAAAAAAAAAAAAAAAAAGAG AATAAAAAAAAAAAAAAAAAGAG,ACAAAAAAAAAAAAAAAAAAGAG,ACTAAAAAAAAAAAAAAAAAGAG,AAAAAAAAAAAAAAAAAAAAAGAG,AATAAAAAAAAAAAAAAAAAAGAG,ACAAAAAAAAAAAAAAAAAAAGAG,ACTAAAAAAAAAAAAAAAAAAGAC,ACTAAAAAAAAAAAAAAAAAAAGAG . PASS DR2=0,0,0.99,0.86,0,0,0.99,0;AF=0,0,0.268,0.0482,0,0,0.0298,0;END=15663722;IMP;START=15663705;PERIOD=1;DSLEN=17.0,19.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0.01,0,0,0,0:1 3|0:0,0,1,0,0,0,0,0:0.5 4|0:0,0,0,0.99,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 7|0:0,0,0,0.02,0,0,0.98,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 3|3:0,0,1.96,0,0,0,0,0:0 0|7:0,0,0,0,0,0,1,0:1 4|0:0,0,0,1,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0:0 0|3:0,0,0.88,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0:0 3|0:0,0,1,0.02,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 0|3:0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0.05,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|4:0,0,0,0.86,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 3|0:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 3|0:0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 0|3:0,0,0.96,0.03,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0:0.5 4|4:0,0,0,1.7,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0.01,0.1,0,0,0,0:1 7|0:0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.02,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0:0.5 0|0:0,0,0,0.02,0,0,0,0:1 3|0:0,0,1,0,0,0,0,0:0.5 3|0:0,0,1,0.01,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 +21 15663778 STR_869601 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=1,0,0.94,0.99,0.97,0.94,1,0.98,0,0;AF=0.1895,0,0.0751,0.2093,0.1957,0.0552,0.08,0.01,0,0;END=15663801;IMP;START=15663778;PERIOD=2;DSLEN=8.0,20.0 GT:DS:TRDS 5|5:0,0,0,0,2,0,0,0,0,0:1.16667 4|7:0,0,0,1,0,0,1,0,0,0:1.25 1|0:1,0,0,0,0,0,0,0,0,0:0.333333 5|1:1,0,0,0,1,0,0,0,0,0:0.583333 1|4:1,0,0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.666667 4|4:0,0,0,2,0,0,0,0,0,0:1 3|5:0,0,1,0,0.99,0.01,0,0,0,0:1 3|6:0,0,0.98,0,0.02,1,0,0,0,0:1.08333 0|4:0,0,0,1,0,0,0,0,0,0:0.833333 5|4:0,0,0,1,1,0,0,0,0,0:1.08333 1|1:1.99,0,0,0.01,0,0,0,0,0,0:0 4|3:0,0,1,1,0,0,0,0,0,0:0.916667 5|0:0,0,0,0,1,0,0,0,0,0:0.916667 5|3:0,0,0.99,0,1,0,0,0,0,0:1 7|7:0,0,0,0,0,0,2,0,0,0:1.5 1|1:2,0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0,0:0.333333 1|4:1,0,0,1,0,0,0,0,0,0:0.5 1|6:1,0,0,0,0,1,0,0,0,0:0.666667 5|4:0,0,0,1,1,0,0,0,0,0:1.08333 7|1:1,0,0,0,0,0,1,0,0,0:0.75 1|0:1,0,0,0,0,0,0,0,0,0:0.333333 1|0:1,0,0,0,0,0,0,0,0,0:0.333333 0|7:0,0,0,0,0,0,1,0,0,0:1.08333 7|4:0,0,0.01,0.99,0,0,0.99,0.01,0,0:1.25 4|0:0,0,0.01,1,0,0,0,0,0,0:0.833333 5|5:0,0,0,0,2,0,0,0,0,0:1.16667 4|5:0,0,0,1,1,0,0,0,0,0:1.08333 5|5:0,0,0,0,2,0,0,0,0,0:1.16667 6|4:0,0,0,1,0.09,0.91,0,0,0,0:1.16667 1|4:1,0,0,1,0,0,0,0,0,0:0.5 5|4:0,0,0.05,0.95,1,0,0,0,0,0:1.08333 1|0:1,0,0.38,0,0,0,0,0,0,0:0.333333 1|5:1,0,0,0,1,0,0,0,0,0:0.583333 0|1:0.95,0,0.09,0,0.05,0,0,0,0,0:0.333333 7|4:0,0,0,1,0,0,1,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0:1.16667 0|1:1,0,0,0,0,0,0,0,0,0:0.333333 4|6:0.01,0,0,0.99,0.41,0.6,0,0,0,0:1.16667 3|3:0,0,2,0,0,0,0,0,0,0:0.833333 6|5:0,0,0,0,1,1,0,0,0,0:1.25 6|0:0,0,0,0,0,1,0,0,0,0:1 4|8:0,0,0,1,0,0,0.01,0.99,0,0:1.33333 0|4:0,0,0,1,0,0,0,0,0,0:0.833333 1|0:1,0,0,0,0,0,0,0,0,0:0.333333 7|4:0,0,0.01,0.98,0.01,0,1,0,0,0:1.25 3|0:0,0,1,0,0,0,0,0,0,0:0.75 5|0:0,0,0,0,1,0,0,0,0,0:0.916667 4|0:0,0,0,1,0,0,0,0,0,0:0.833333 +21 15664856 STR_869603 TGAATGAATGAATGAATGAATGAA TGAATGAATGAATGAATGAA,TGAATGAATGAATGAATGAATGAATGAA,TGAATGAATGAATGAATGAATGAATGAATGAA . PASS DR2=0,0.98,0;AF=0,0.3155,0;END=15664879;IMP;START=15664856;PERIOD=4;DSLEN=5.0,8.0 GT:DS:TRDS 0|0:0,0,0:0.666667 2|2:0,2,0:1.33333 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|2:0,1,0:1 0|0:0,0,0:0.666667 2|2:0,1.99,0:1.33333 0|0:0,0,0:0.666667 2|0:0,0.98,0:1 0|2:0,1,0:1 0|2:0,0.64,0:1 0|0:0,0.01,0:0.666667 2|2:0,2,0:1.33333 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 2|2:0,2,0:1.33333 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|2:0,1,0:1 0|0:0,0,0:0.666667 0|2:0,1,0:1 2|0:0,1,0:1 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|2:0,1,0:1 2|2:0,2,0:1.33333 2|0:0,1,0:1 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|2:0,1,0:1 0|2:0,1,0:1 0|2:0,0.98,0:1 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 2|2:0,2,0:1.33333 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 2|0:0,0.99,0:1 2|0:0,1,0:1 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 2|2:0,1.99,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:0.666667 2|2:0,1.98,0:1.33333 0|0:0,0,0:0.666667 0|0:0,0,0:0.666667 2|0:0,1,0:1 +21 15667546 STR_869605 ACACACACACACATGCACACACACACGCACACACACACACATACACATATATATACACACACACACAC ACACACACACACACACACACACACATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACGCACACACACACACATACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACATACACATATATACACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATACACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACATACATATATATATATACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACCCATACATATATATATACACACACACACAC,ACACACACACACATGCACACACACACGCACACACACACACACATACACATATATATACACACACACACAC,ACACACACACACACATGCACACACACACGCACACACACACACACATACATATATATATACACACACACACAC . PASS DR2=0,0,0,0,0,0,1,0,0,0,0;AF=0,0,0,0,0,0,0.78,0,0,0,0;END=15667613;IMP;START=15667546;PERIOD=2;DSLEN=26.0,36.0 GT:DS:TRDS 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|0:0,0,0,0,0,0,0,0,0,0,0:1.6 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|7:0,0,0,0,0,0,1,0,0,0,0:1.7 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|7:0,0,0,0,0,0,2,0,0,0,0:1.8 0|0:0,0,0,0,0,0,0,0,0,0,0:1.6 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 7|0:0,0,0,0,0,0,1,0,0,0,0:1.7 +21 15667912 STR_869606 AAAAATAAAAAAAAAA AAAAATAAAAAAAAA . PASS DR2=0.99;AF=0.0709;END=15667927;IMP;START=15667912;PERIOD=1;DSLEN=15.0,16.0 GT:DS:TRDS 0|1:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0.02:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 1|0:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|1:1:1 0|1:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0.05:2 0|0:0:2 1|1:2:0 0|0:0:2 0|0:0.01:2 0|1:1:1 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0:2 0|0:0.02:2 0|0:0:2 0|0:0:2 0|0:0:2 +21 15668784 STR_869608 AAAAAAAAAAAAAAA AAAAAAAAAAAAA,AAAAAAAAAAAAAA . PASS DR2=0,1;AF=0,0.78;END=15668798;IMP;START=15668784;PERIOD=1;DSLEN=13.0,15.0 GT:DS:TRDS 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 0|0:0,0:2 2|2:0,2:1 0|2:0,1:1.5 2|2:0,2:1 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 2|0:0,1:1.5 0|2:0,1:1.5 2|2:0,2:1 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 2|2:0,2:1 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 2|2:0,2:1 0|2:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 0|0:0,0:2 2|0:0,1:1.5 2|0:0,1:1.5 +21 15669398 STR_869610 TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG,TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTTAG,TTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTTGAG,TTTATTTATTTATTTACTTATTTTTATTTATTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTTGAG,TTTATTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTTGAG,TTTATTTATTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTTTAT,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTTTTAG,TTTATTTGTTTATTTACTTATTTTTATTTATTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTTAT,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATTTTTTATTTATTTATTATTTCTTTATTTATTTATTCATTCATTTATTTATTTATTTATTTTGAG,TTTATTTGTTTATTTACTTATTTTTATCTTTTATTTATTTATTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTTATTTTGAG . PASS DR2=0.99,0,0,0,0.99,0,0,1,1,0,0,0,0,0,0;AF=0.1776,0,0,0,0.2689,0,0,0.01,0.12,0,0,0,0,0,0;END=15669484;IMP;START=15669398;PERIOD=4;DSLEN=19.75,22.75 GT:DS:TRDS 5|5:0,0,0,0,1.99,0,0,0,0,0,0,0,0,0,0:0.666667 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 5|8:0,0,0,0,1,0,0,1,0,0,0,0,0,0,0:1 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 9|5:0,0,0,0,1,0,0,0,1,0,0,0,0,0,0:1 0|1:0.98,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 5|1:1,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 1|9:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 9|9:0,0,0,0,0,0,0,0,2,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 0|1:0.83,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 9|0:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.33333 9|1:0.99,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.666667 1|5:1,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.333333 5|5:0,0,0,0,1.99,0,0,0,0,0,0,0,0,0,0:0.666667 5|1:1,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.333333 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 5|1:0.99,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 0|5:0,0,0,0,0.87,0,0,0,0,0,0,0,0,0,0:1 9|1:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.666667 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 1|5:0.99,0,0,0,1.01,0,0,0,0,0,0,0,0,0,0:0.333333 9|5:0,0,0,0,1,0,0,0,1,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 1|9:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.666667 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 9|1:0.98,0,0,0,0.02,0,0,0,1,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.33333 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1 1|0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 +21 15671077 STR_869613 ATATATATATATATATATTTT AGATATATATATATATATT,ATATATATATATATATATA,ATATATATATATATATATT,ATATATATATATATATTTT,ATATATATATATATATTTTT,ATATATATATATATATATATA,ATATATATATATATATATATT,ATATATATATATATATTTTTT,ATATATATATATATATATATATA,ATATATATATATATATATATTTT,ATATATATATATATATATATATTT,ATATATATATATATATATATTTTT,ATATATATATATATATATTTTTTT,ATATATATATATATATATATATATA,ATATATATATATATATATATATTTTT . PASS DR2=0,1,1,1,0,0.97,0,0.92,0.68,0,0,0.99,0,0,0;AF=0,0.2,0.1702,0.03,0,0.1712,0,0.0359,0.007,0,0,0.2016,0,0,0;END=15671094;IMP;START=15671077;PERIOD=2;DSLEN=8.0,11.5 GT:DS:TRDS 2|3:0,1,1,0,0,0,0,0,0,0,0,0,0,0,0:0 12|3:0,0,1,0,0,0,0,0,0,0,0,1,0,0,0:0.714286 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0 12|6:0,0,0,0,0,1,0,0,0,0,0,1,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.571429 6|6:0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.571429 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 4|2:0,1,0,1,0,0,0,0,0,0,0,0,0,0,0:0 8|6:0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:0.571429 2|6:0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 12|12:0,0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.42857 6|4:0,0,0,1,0,1,0,0,0,0,0,0,0,0,0:0.285714 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0,0:0 12|12:0,0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.42857 0|12:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 12|6:0,0,0,0,0,0.84,0,0,0.01,0,0,1.15,0,0,0:1 12|2:0,1,0,0,0,0,0,0,0,0,0,1,0,0,0:0.714286 3|12:0,0,1,0,0,0,0,0,0,0,0,1,0,0,0:0.714286 3|12:0,0,1,0,0,0,0,0,0,0,0,1,0,0,0:0.714286 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 0|3:0,0,1,0,0,0,0,0.01,0,0,0,0,0,0,0:0.285714 3|6:0,0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0 6|3:0,0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 2|3:0,1,1,0,0,0,0,0,0,0,0,0,0,0,0:0 2|6:0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 12|6:0,0,0,0,0,1,0,0,0,0,0,1,0,0,0:1 2|6:0,1,0,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 12|8:0,0,0,0,0,0,0,0.61,0,0,0,1,0,0,0:1 12|2:0,1,0,0,0,0,0,0,0,0,0,1,0,0,0:0.714286 0|3:0,0,0.98,0,0,0,0,0,0,0,0,0.02,0,0,0:0.285714 3|9:0,0,1,0,0,0.31,0,0,0.69,0,0,0,0,0,0:0.571429 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0,0:0 8|12:0,0,0,0,0,0,0,1,0,0,0,1,0,0,0:1 6|2:0,1,0.01,0,0,0.99,0,0,0,0,0,0,0,0,0:0.285714 4|3:0,0,1,1,0,0,0,0,0,0,0,0,0,0,0:0 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 6|3:0,0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.285714 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.571429 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0:1 3|6:0,0,1.02,0,0,0.98,0,0,0,0,0,0,0,0,0:0.285714 0|8:0,0,0,0,0,0,0,0.97,0,0,0,0,0,0,0:0.571429 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 6|0:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.571429 +21 15673686 STR_869614 GTCTCAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA GTCTCAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAA,GTCTCAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GACTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTCAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTCAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTCAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA,GTCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAA . PASS DR2=0,0.89,0,0.81,0.69,0,0,1,0.01,0.99,0;AF=0,0.0231,0,0.0312,0.0999,0,0,0.03,0.0001,0.08,0;END=15673729;IMP;START=15673691;PERIOD=1;DSLEN=36.0,43.0 GT:DS:TRDS 0|10:0,0,0,0,0,0,0,0,0,1,0:1.28571 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.03,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.01,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|2:0,1.01,0,0,0,0,0,0,0,0,0:0.714286 0|5:0,0,0,0,0.91,0,0,0,0,0,0:0.857143 8|0:0,0,0,0,0.41,0,0,1,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.33,0,0,0,0,0,0:0.857143 5|0:0,0,0,0,0.73,0,0,0,0,0,0:0.857143 0|8:0,0,0,0,0,0,0,1,0,0,0:1.14286 5|0:0,0,0,0,1,0,0,0,0,0,0:0.857143 5|0:0,0,0,0,0.95,0,0,0,0,0,0:0.857143 4|0:0,0,0,0.99,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.03,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.3,0,0,0,0,0,0:0.857143 0|0:0,0.01,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.03,0,0,0,0,0,0:0.857143 10|0:0,0,0,0,0,0,0,0,0,1,0:1.28571 4|0:0,0,0,0.71,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0.02,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0.01,0,0,0,0,0,0,0:0.857143 0|0:0,0.03,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|5:0,0,0,0,0.51,0,0,0,0,0,0:0.857143 0|10:0,0,0,0,0,0,0,0,0,1,0:1.28571 0|10:0,0,0,0,0,0,0,0,0,1,0:1.28571 5|2:0,1,0,0,0.84,0,0,0,0,0,0:0.714286 5|0:0,0,0,0,0.89,0,0,0,0,0,0:0.857143 0|0:0,0.03,0,0,0.37,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.01,0,0,0,0,0,0:0.857143 0|5:0,0,0,0,1,0,0,0,0,0,0:0.857143 0|10:0,0,0,0,0,0,0,0,0,0.99,0:1.28571 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 10|10:0,0,0,0,0,0,0,0,0,2,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|5:0,0.23,0,0,0.74,0,0,0,0,0.01,0:0.857143 8|10:0,0,0,0,0,0,0,1,0.01,0.99,0:1.57143 0|0:0,0,0,0,0.54,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0.17,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0.02,0:0.857143 0|0:0,0,0,0,0,0,0,0,0,0,0:0.857143 0|4:0,0,0,0.9,0.21,0,0,0,0,0,0:0.857143 0|0:0,0,0,0.48,0,0,0,0,0,0,0:0.857143 +21 15676444 STR_869616 TGTGTGTGTGTGTGTGTGTGTGTGTTGTTTGTTTGTATGTGTGAGT TGTGTGTGTGTGTGTGTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAG,TGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTTGTTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTTGTTTGTATGTGTGAGT . PASS DR2=0,1,0,0,0.97,0,0,0.88,0,0.43,0,1,0,0;AF=0,0.19,0,0,0.3482,0,0,0.1441,0,0.0177,0,0.08,0,0;END=15676486;IMP;START=15676444;PERIOD=2;DSLEN=17.0,25.5 GT:DS:TRDS 2|12:0,1,0,0,0,0,0,0,0,0,0,1,0,0:0.941176 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.823529 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 2|5:0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.588235 5|8:0,0,0,0,1,0,0,1,0,0,0,0,0,0:0.941176 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 8|8:0,0,0,0,0,0,0,1.98,0,0.02,0,0,0,0:1.05882 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.705882 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.588235 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 2|8:0,1,0,0,0,0,0,0.75,0,0.25,0,0,0,0:0.705882 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.823529 8|5:0,0,0,0,1,0,0,0.5,0,0.5,0,0,0,0:0.941176 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.705882 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.705882 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.823529 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.823529 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 5|8:0,0,0,0,1,0,0,1,0,0,0,0,0,0:0.941176 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.588235 12|5:0,0,0,0,1,0,0,0,0,0,0,1,0,0:1.17647 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0:0.823529 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 5|8:0,0,0,0,1.12,0,0,0.88,0,0,0,0,0,0:0.941176 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0:0.352941 8|12:0,0,0,0,0,0,0,1,0,0,0,1,0,0:1.29412 2|12:0,1,0,0,0,0,0,0,0,0,0,1,0,0:0.941176 2|8:0,1,0,0,0,0,0,1,0,0,0,0,0,0:0.705882 5|8:0,0,0,0,1.12,0,0,0.88,0,0,0,0,0,0:0.941176 2|8:0,1,0,0,0.38,0,0,0.56,0,0.06,0,0,0,0:0.705882 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0,0:0.588235 0|12:0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.29412 5|8:0,0,0,0,1.04,0,0,0.96,0,0,0,0,0,0:0.941176 12|12:0,0,0,0,0,0,0,0,0,0,0,2,0,0:1.52941 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 8|2:0,1,0,0,0.15,0,0,0.49,0,0.36,0,0,0,0:0.705882 5|12:0,0,0,0,1,0,0,0,0,0,0,1,0,0:1.17647 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0:0.352941 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.705882 8|5:0,0,0,0,1,0,0,1,0,0,0,0,0,0:0.941176 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.05882 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.941176 5|10:0,0,0,0,1.01,0,0,0.41,0,0.59,0,0,0,0:1.05882 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.05882 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.705882 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.05882 +21 15684757 STR_869617 ACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA ACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,ACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,ACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,ACACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA,ACACACACACACACACACACACACACAAAGAGGGAGAGAGAGAGAGA . PASS DR2=0,0.97,0.94,0.82,0;AF=0,0.0761,0.2033,0.0372,0;END=15684795;IMP;START=15684757;PERIOD=2;DSLEN=18.5,23.5 GT:DS:TRDS 0|2:0,1,0,0,0:0.6 4|0:0,0,0.01,0.99,0:1 3|0:0,0,0.89,0,0:0.8 0|3:0,0,1,0,0:0.8 3|0:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 3|0:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 3|3:0,0,1.59,0.41,0:1.2 0|3:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 3|3:0,0,2,0,0:1.2 0|3:0,0,1,0,0:0.8 3|0:0,0,1,0,0:0.8 3|0:0,0,0.98,0.02,0:0.8 2|4:0,1,0.02,0.98,0:1.2 0|3:0,0,0.87,0.13,0:0.8 3|0:0,0,1,0,0:0.8 3|0:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 4|0:0,0,0.01,0.99,0:1 0|0:0,0,0,0,0:0.4 0|2:0,1,0,0,0:0.6 0|2:0,1,0,0,0:0.6 0|0:0,0,0,0,0:0.4 3|0:0,0,0.81,0.19,0:0.8 0|0:0,0,0,0,0:0.4 3|0:0,0,1,0,0:0.8 3|0:0,0,1,0,0:0.8 0|2:0,1,0,0,0:0.6 0|0:0,0,0,0,0:0.4 2|2:0,1.61,0.17,0,0:0.8 0|3:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 3|2:0,1,1,0,0:1 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 3|0:0,0,1,0,0:0.8 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 0|0:0,0,0,0,0:0.4 +21 15693963 STR_869618 TTTTTTTTTTTTTG TTTTTTTTTTTTG,TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTG . PASS DR2=1,1,0,0;AF=0.19,0.0899,0,0;END=15693975;IMP;START=15693963;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 0|0:0,0,0,0:0.666667 1|2:1,1,0,0:0.666667 0|0:0,0,0,0:0.666667 0|1:1,0,0,0:0.333333 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 1|1:2,0,0,0:0 0|1:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 2|2:0,1.99,0,0:1.33333 1|1:2,0,0,0:0 0|1:1,0,0,0:0.333333 1|0:1,0,0,0:0.333333 1|0:1,0,0,0:0.333333 0|1:1,0,0,0:0.333333 2|1:1,1,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|2:0,1,0,0:1 2|0:0,1,0,0:1 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 2|0:0,1,0,0:1 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|2:0,1,0,0:1 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 2|0:0,1,0,0:1 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 +21 15699585 STR_869623 TGTTTTTTTTTTTT TGTTTTTTTTTTT,TTTTTTTTTTTTTT,TGTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT . PASS DR2=0.98,1,0,1,0;AF=0.2849,0.15,0,0.03,0;END=15699598;IMP;START=15699587;PERIOD=1;DSLEN=11.0,14.0 GT:DS:TRDS 0|1:1,0,0,0,0:0.333333 1|0:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 0|1:1,0,0,0,0:0.333333 1|2:1,1,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 2|0:0,1,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 4|0:0,0,0,1,0:1 0|2:0.01,1,0,0,0:0.666667 0|2:0,1,0,0,0:0.666667 1|1:2,0,0,0,0:0 2|4:0,1,0,1,0:1 0|0:0.05,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0.04,0,0,0,0:0.666667 1|1:2,0,0,0,0:0 0|1:1,0,0,0,0:0.333333 1|2:1,1,0,0,0:0.333333 1|0:1,0,0,0,0:0.333333 1|1:2,0,0,0,0:0 0|1:1.37,0,0,0,0:0.333333 1|0:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 0|1:1.01,0,0,0,0:0.333333 1|2:1,1,0,0,0:0.333333 1|0:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 2|1:1,1,0,0,0:0.333333 0|1:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 1|2:1,1,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 1|0:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 0|1:1,0,0,0,0:0.333333 1|2:1,1,0,0,0:0.333333 1|0:1,0,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 2|0:0,1,0,0,0:0.666667 4|1:1,0,0,1,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 2|1:1,1,0,0,0:0.333333 0|2:0.01,1,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 1|2:1,1,0,0,0:0.333333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 2|0:0.01,1,0,0,0:0.666667 +21 15701797 STR_869624 AGCAAAAAAAAAAAACAAAAAAAAAA AGAAAAAAAAAAAACAAAAAAAAA,AGCAAAAAAAAAAACAAAAAAAAA,AGCAAAAAAAAAAAACAAAAAAAAA,AGCAAAAAAAAAAACAAAAAAAAAA,AAAAAAAAAAAAAAACAAAAAAAAAA,AGAAAAAAAAAAAAAACAAAAAAAAA,AGAAAAAAAAAAAAACAAAAAAAAAA,AGCAAAAAAAAAAAAACAAAAAAAAA,AGCAAAAAAAAAAAACCAAAAAAAAA,AGAAAAAAAAAAAAAACAAAAAAAAAA,AGCAAAAAAAAAAAAACAAAAAAAAAA,AGCAAAAAAAAAAAACAAAAAAAAAAA,AGCAAACAAAAAAAAACAAAAAAAAAA,AGCAAAAAAAAAAAAAACAAAAAAAAAA . PASS DR2=0,1,0,0,0.63,0,0.64,1,0,0,1,0,0,0;AF=0,0.2004,0,0,0.0419,0,0.0076,0.07,0,0,0.03,0,0,0;END=15701822;IMP;START=15701800;PERIOD=1;DSLEN=21.0,25.0 GT:DS:TRDS 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0.01,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0.03,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0.31,0,0,0,0,0,0,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0:0 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 7|0:0,0,0,0,0,0,0.7,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0.04,0,0,0,0,0,0,0,0,0,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0:0 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 2|5:0,1,0,0,0.94,0,0,0,0,0,0,0,0,0:0.5 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 8|2:0,1,0,0,0,0,0,1,0,0,0,0,0,0:0.5 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.4,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.23,0,0,0,0,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 0|0:0,0,0,0,0.06,0,0.01,0,0,0,0,0,0,0:1 2|5:0,1,0,0,0.96,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.32,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0.01,0,0,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0.03,0,0,0,0,0,0,0:1 11|8:0,0,0,0,0,0,0,1,0,0,1,0,0,0:1.25 0|0:0,0,0,0,0.26,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0.04,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 5|0:0,0,0,0,0.65,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 +21 15712800 STR_869629 GGCAAAAAAAAAAAAA GGCAAAAAAAAAAAA,GACAAAAAAAAAAAAA,GGAAAAAAAAAAAAAA,GGCAAAAAAAAAAAAAA . PASS DR2=1,0,0,0;AF=0.12,0,0,0;END=15712815;IMP;START=15712803;PERIOD=1;DSLEN=12.0,14.0 GT:DS:TRDS 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 1|0:1,0,0,0:0.5 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 +21 15713986 STR_869630 TCTGGGTTTTTTTGTTTTTTTC TCTGGTTTTTTTTTTTTTTTTC,TCTGGTTTTTTTTTTTTTTTTT,TCTGTTTTTTTTTTTTTTTTTC,TCTGGTTTTTTTTTTTTTTTTTC,TCTGGTTTTTTTTTTTTTTTTTT,TCTGTTTTTTTTTTTTTTTTTTC,TCTGTTTTTTTTTTTTTTTTTTT,TTTGGTTTTTTTTTTTTTTTTTC,TCTGGTTTTTTTTTTTTTTTTTTC,TCTGTTTTTTTTTTTTTTTTTTTC . PASS DR2=1,0,0,1,0,1,0,0,0,0;AF=0.07,0,0,0.05,0,0.19,0,0,0,0;END=15714006;IMP;START=15713992;PERIOD=1;DSLEN=15.0,17.0 GT:DS:TRDS 0|1:1,0,0,0,0,0,0,0,0,0:0 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|4:0,0,0,1,0,0,0,0,0,0:0.5 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 6|6:0,0,0,0,0,2,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 6|6:0,0,0,0,0,2,0,0,0,0:1 0|6:0,0,0,0,0,1,0,0,0,0:0.5 6|0:0,0,0,0,0,1,0,0,0,0:0.5 6|0:0,0,0,0,0,1,0,0,0,0:0.5 1|6:1,0,0,0,0,1,0,0,0,0:0.5 0|6:0,0,0,0,0,1,0,0,0,0:0.5 6|0:0,0,0,0,0,1,0,0,0,0:0.5 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 6|0:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0,0:0 4|0:0,0,0,1,0,0,0,0,0,0:0.5 1|6:1,0,0,0,0,1,0,0,0,0:0.5 0|6:0,0,0,0,0,1,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|1:1,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|4:0,0,0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 6|0:0,0,0,0,0,1,0,0,0,0:0.5 4|0:0,0,0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0:0 +21 15723674 STR_869635 TTTTTTTTTTTTTTG TTTTTTTTTTTTTG,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTT . PASS DR2=0.99,0.85,0.89,0;AF=0.0707,0.0118,0.0651,0;END=15723687;IMP;START=15723674;PERIOD=1;DSLEN=13.0,15.0 GT:DS:TRDS 3|1:1,0,0.96,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|3:0,0,1,0:1.5 0|0:0,0,0,0:1 0|2:0,1,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 3|0:0,0,0.97,0:1.5 0|0:0.04,0,0,0:1 0|0:0,0.01,0,0:1 0|0:0.01,0.04,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.02,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 1|0:1,0,0,0:0.5 0|0:0,0.03,0,0:1 0|0:0,0.01,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0.01,0,0:1 0|0:0,0.01,0,0:1 0|0:0,0.01,0.27,0:1 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 0|0:0,0.01,0.09,0:1 0|0:0,0,0,0:1 3|0:0,0,0.98,0:1.5 0|0:0,0.06,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1.01,0,0.01,0:0.5 0|3:0,0,0.97,0:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0.26,0:1 3|0:0,0,0.99,0:1.5 0|0:0,0,0.01,0:1 +21 15724312 STR_869637 GTCTTCATATATATATATATATAATATATATATATA GTCTTCATATATATATATATAATATATATATA,GACTTCATATATATATATATAATATATATATATA,GTCTTCATATATATATACATAATATATATATATA,GTCTTCATATATATATATATAAAATATATATATA,GTCTTCATATATATATATATAATATATATATATA,GTCTTCATATATATATATATATATAATATATATATATA,GTCTTCATATATATATATATATATATAATATATATATATA . PASS DR2=0,0,0,0,0.99,0.86,0;AF=0,0,0,0,0.4515,0.0119,0;END=15724347;IMP;START=15724318;PERIOD=2;DSLEN=13.0,17.0 GT:DS:TRDS 0|5:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0,0:1 0|6:0,0,0,0,0,1,0:1.25 5|5:0,0,0,0,2,0,0:0.5 0|0:0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0:0.75 0|5:0,0,0,0,1,0,0:0.75 5|5:0,0,0,0,1.98,0,0:0.5 5|0:0,0,0,0,1.06,0,0:0.75 0|0:0,0,0,0,0.01,0.17,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0:0.5 0|5:0,0,0,0,1,0,0:0.75 5|5:0,0,0,0,2,0,0:0.5 5|0:0,0,0,0,1,0,0:0.75 5|5:0,0,0,0,2,0,0:0.5 0|5:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 0|5:0,0,0,0,1,0,0:0.75 0|5:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0:0.5 0|5:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0:0.5 0|0:0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0:0.75 0|0:0,0,0,0,0,0.02,0:1 0|5:0,0,0,0,1,0,0:0.75 5|5:0,0,0,0,2,0,0:0.5 5|5:0,0,0,0,2,0,0:0.5 0|5:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 0|5:0,0,0,0,1.1,0,0:0.75 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0:0.5 0|5:0,0,0,0,1,0,0:0.75 5|0:0,0,0,0,1,0,0:0.75 5|5:0,0,0,0,2,0,0:0.5 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0:0.75 +21 15727574 STR_869639 ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAAG,AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG,ATAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAG,AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,ATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG . PASS DR2=0,0,0,0,0,0,0,0,0.75,0,0,0,0,0,0,0,0,0,0.7,0,0,0,0.5,0,0,0,0,0,0,0.69,0.1,0,0,0.11,0,0,0,0,0,0,0,0,0,0,0.64,0,0.68,0,0,0,0,0,0.41,0,0,0,0.57,0,0,0,0,0,0.83,0,0,0,0,0,0,0;AF=0,0,0,0,0,0,0,0,0.0863,0,0,0,0,0,0,0,0,0,0.1371,0,0,0,0.0272,0,0,0,0,0,0,0.1737,0.001,0,0,0.0061,0,0,0,0,0,0,0,0,0,0,0.0149,0,0.235,0,0,0,0,0,0.0073,0,0,0,0.0577,0,0,0,0,0,0.0244,0,0,0,0,0,0,0;END=15727643;IMP;START=15727576;PERIOD=4;DSLEN=8.0,22.0 GT:DS:TRDS 47|30:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31,0,0,0,0,0,0,0.69,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.28571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.28571 47|9:0,0,0,0,0,0,0,0,0.87,0,0,0,0,0,0,0,0,0,0.12,0,0,0,0,0,0,0,0,0,0,0.21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 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30|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,1.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.21429 +21 15738706 STR_869643 TTTTTTTTTTTTTG TTTTTTTTTTTG,TTTTTTTTTTTTG,TTTTTTTTTTTTTT . PASS DR2=0,1,0;AF=0,0.2901,0;END=15738718;IMP;START=15738706;PERIOD=1;DSLEN=11.0,13.0 GT:DS:TRDS 2|0:0,1,0:1.5 0|0:0,0,0:2 2|0:0,1,0:1.5 2|2:0,2,0:1 0|0:0,0,0:2 2|0:0,1,0:1.5 0|0:0,0,0:2 0|2:0,1,0:1.5 0|2:0,1,0:1.5 0|0:0,0,0:2 2|0:0,1,0:1.5 2|0:0,1,0:1.5 0|0:0,0,0:2 2|0:0,1,0:1.5 2|0:0,1,0:1.5 0|0:0,0,0:2 0|0:0,0,0:2 0|2:0,1,0:1.5 0|0:0,0,0:2 0|2:0,1,0:1.5 0|0:0,0,0:2 2|0:0,1,0:1.5 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 2|2:0,2,0:1 0|0:0,0,0:2 2|0:0,1,0:1.5 0|0:0,0,0:2 0|2:0,1,0:1.5 2|2:0,2,0:1 0|0:0,0,0:2 2|0:0,1,0:1.5 0|2:0,1,0:1.5 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|2:0,1,0:1.5 0|0:0,0,0:2 2|0:0,1,0:1.5 2|0:0,1,0:1.5 0|0:0,0.01,0:2 0|2:0,1,0:1.5 0|2:0,1,0:1.5 0|0:0,0,0:2 0|2:0,1,0:1.5 2|0:0,1,0:1.5 0|0:0,0,0:2 +21 15739002 STR_869644 CACTCTTTTTTTTTTTTTTTTCAGAC CACTCCTTTTTTTTTTTTTTCAGAC,CACTCCTTTTTTTTTTTTTTTCAAAC,CACTCCTTTTTTTTTTTTTTTCAGAA,CACTCCTTTTTTTTTTTTTTTCAGAC,CACTCCTTTTTTTTTTTTTTTTAGAA,CACTCCTTTTTTTTTTTTTTTTAGAC,CACTCTTTTTTTTTTTTTTTTCAGAA,CACTCTTTTTTTTTTTTTTTTTAGAC,CCCTCTTTTTTTTTTTTTTTTCAGAC,CGCCCCTTTTTTTTTTTTTTTCAGAC,CACTCCTTTTTTTTTTTTTTTTCAGAC,CACTCTTTTTTTTTTTTTTTTTCAGAC,CACTCCTTTTTTTTTTTTTTTTTCAGAC,CACTCCTTTTTTTTTTTTTTTTTTCAGAC . PASS DR2=0,0,0,1,0,0,0,0,0,0,1,0,0,0;AF=0,0,0,0.5399,0,0,0,0,0,0,0.2501,0,0,0;END=15739022;IMP;START=15739007;PERIOD=1;DSLEN=15.0,19.0 GT:DS:TRDS 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.5 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0:1 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0:1 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,1.99,0,0,0,0,0,0,0.01,0,0,0:0.5 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:0.75 11|4:0,0,0,1,0,0,0,0,0,0,1,0,0,0:0.75 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.5 +21 15747813 STR_869647 TTTTTTTTTTTTTTTTTTTTTTAG TTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTTTAT,TTTTTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTTTTTTAG,TTTTTTTTTTTTTTTTTTTTTTTTTAT,TTTTTTTTTTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTTTTTTTTTAG . PASS DR2=1,0.97,0.9,0,0,0,0,0,0,0.99,0,0,0.06;AF=0.02,0.3406,0.129,0,0,0,0,0,0,0.2518,0,0,0.0006;END=15747834;IMP;START=15747813;PERIOD=1;DSLEN=19.0,26.0 GT:DS:TRDS 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:0.857143 10|3:0,0,0.99,0,0,0,0,0,0,1,0,0,0:1.14286 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.285714 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.714286 2|10:0,1,0,0,0,0,0,0,0,1,0,0,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.714286 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.285714 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0:1 1|0:1,0,0,0,0,0,0,0,0,0,0,0,0:0.428571 2|2:0,1.98,0.02,0,0,0,0,0,0,0,0,0,0:0.285714 3|0:0,0.01,0.98,0,0,0,0,0,0,0,0,0,0:0.714286 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 2|0:0,0.85,0.15,0,0,0,0,0,0,0,0,0,0:0.571429 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.714286 2|3:0,1,0.86,0,0,0,0,0,0,0,0,0,0:0.428571 2|3:0,0.99,1.01,0,0,0,0,0,0,0,0,0,0:0.428571 3|2:0,1,0.8,0,0,0,0,0,0,0,0,0,0:0.428571 0|2:0,0.97,0.03,0,0,0,0,0,0,0,0,0,0:0.571429 0|2:0,0.5,0.49,0,0,0,0,0,0,0,0,0,0:0.571429 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0:1.71429 2|0:0,0.98,0.02,0,0,0,0,0,0,0,0,0,0:0.571429 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.285714 2|10:0,1,0,0,0,0,0,0,0,1,0,0,0:1 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0:1.71429 3|0:0,0.03,0.78,0,0,0,0,0,0,0,0,0,0:0.714286 10|2:0,1,0,0,0,0,0,0,0,0.94,0,0,0.06:1 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 2|3:0,0.84,0.77,0,0,0,0,0,0,0.18,0,0,0:0.428571 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 2|10:0,0.93,0.01,0,0,0,0,0,0,1.05,0,0,0:1 1|2:1,1,0,0,0,0,0,0,0,0,0,0,0:0.142857 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 10|3:0,0,1,0,0,0,0,0,0,1,0,0,0:1.14286 2|2:0,1.99,0,0,0,0,0,0,0,0.01,0,0,0:0.285714 3|10:0,0,0.99,0,0,0,0,0,0,1,0,0,0:1.14286 2|10:0,1,0,0,0,0,0,0,0,1,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.285714 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0:1.28571 10|3:0,0,1,0,0,0,0,0,0,1,0,0,0:1.14286 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0:0.571429 +21 15750946 STR_869650 TTTTTTTTTTTTTG TTTTTTTTTTTTG,TTTTTTTTTTTTTA,TTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTT . PASS DR2=1,0,0.99,0;AF=0.04,0,0.2525,0;END=15750958;IMP;START=15750946;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 3|0:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 3|1:1,0,1,0:1 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1.33333 0|3:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 3|0:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|1:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 1|0:1,0,0,0:0.333333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 3|3:0,0,2,0:2 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1.33333 3|3:0,0,2,0:2 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 0|3:0,0,1,0:1.33333 0|0:0,0,0.18,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|3:0,0,1.05,0:1.33333 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1.33333 3|0:0,0,1,0:1.33333 0|0:0,0,0.01,0:0.666667 0|3:0,0,1,0:1.33333 0|3:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1.33333 3|0:0,0,1,0:1.33333 0|0:0,0,0,0:0.666667 +21 15762318 STR_869655 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . PASS DR2=0.98,0,0.99,0.02,0.95,0,0.9,0;AF=0.1547,0,0.0203,0.0002,0.5666,0,0.176,0;END=15762353;IMP;START=15762318;PERIOD=2;DSLEN=12.0,19.0 GT:DS:TRDS 7|0:0,0,0,0,0,0,0.95,0:1.57143 0|7:0,0,0,0,0,0,0.79,0:1.57143 5|1:1,0,0,0,1,0,0,0:0.571429 5|3:0,0,1,0,1,0,0,0:0.857143 5|5:0,0,0,0,2,0,0,0:1.14286 5|5:0,0,0,0,2,0,0,0:1.14286 7|1:1,0,0,0,0,0,1,0:0.714286 5|5:0,0,0,0,2,0,0,0:1.14286 7|5:0,0,0,0,1,0,1,0:1.28571 7|5:0,0,0,0,1,0,1,0:1.28571 5|5:0,0,0,0,2,0,0,0:1.14286 5|1:1,0,0,0,0.99,0,0.01,0:0.571429 5|5:0,0,0,0,1.85,0,0.13,0:1.14286 5|7:0,0,0,0,1,0,1,0:1.28571 5|5:0,0,0,0,2,0,0,0:1.14286 1|7:1,0,0,0,0,0,0.96,0:0.714286 5|5:0,0,0,0,1.99,0,0.01,0:1.14286 1|5:1,0,0,0,0.99,0,0.01,0:0.571429 7|7:0,0,0,0,0,0,1.98,0:1.42857 7|5:0,0,0,0,1,0,1,0:1.28571 5|0:0,0,0,0,0.99,0,0.01,0:1.42857 3|1:1,0,1,0,0,0,0,0:0.285714 5|1:1,0,0,0,0.95,0,0,0:0.571429 5|1:1,0,0,0,1,0,0,0:0.571429 1|5:1,0,0,0,1,0,0,0:0.571429 7|5:0,0,0,0,0.95,0,1.02,0:1.28571 0|1:1,0,0,0,0,0,0.25,0:0.857143 5|5:0,0,0,0,2,0,0,0:1.14286 5|7:0,0,0,0,0.85,0,1,0:1.28571 5|5:0,0,0,0,1.93,0,0.05,0:1.14286 5|5:0,0,0,0,1.84,0,0.06,0:1.14286 0|5:0,0,0,0,1.17,0,0.02,0:1.42857 5|5:0.01,0,0,0,1.99,0,0,0:1.14286 1|7:1,0,0,0,0,0,1,0:0.714286 5|0:0,0,0,0,1.26,0,0.07,0:1.42857 7|5:0,0,0,0,1,0,1,0:1.28571 5|1:1,0,0,0,0.99,0,0.01,0:0.571429 7|5:0,0,0,0,1,0,0.98,0:1.28571 7|5:0,0,0,0,1,0,0.99,0:1.28571 5|5:0,0,0,0,1.99,0,0,0:1.14286 1|5:0.44,0,0.02,0,1.15,0,0.22,0:0.571429 5|0:0,0,0,0,1,0,0.13,0:1.42857 5|1:1,0,0,0,1,0,0,0:0.571429 5|5:0,0,0,0,1.88,0,0.03,0:1.14286 1|5:1,0,0,0,1,0,0,0:0.571429 5|5:0,0,0,0,2,0,0,0:1.14286 5|5:0,0,0,0.02,1.91,0,0.02,0:1.14286 7|5:0,0,0,0,1,0,0.9,0:1.28571 5|1:1,0,0,0,1,0,0,0:0.571429 5|0:0,0,0,0,1,0,0.01,0:1.42857 +21 15763445 STR_869656 TTTGTTTGTTTGTTTG TTTGTTTGTTTG . PASS DR2=0.99;AF=0.6014;END=15763460;IMP;START=15763445;PERIOD=4;DSLEN=3.0,4.0 GT:DS:TRDS 0|0:0:2 0|0:0:2 1|0:1:1 1|0:1:1 1|1:2:0 1|1:2:0 0|0:0:2 1|1:2:0 0|1:1:1 0|1:1:1 1|1:2:0 1|0:1:1 1|1:2:0 1|0:1:1 1|1:2:0 0|0:0:2 1|1:2:0 0|1:1:1 1|0:1:1 0|1:1:1 1|0:1:1 0|0:0:2 1|0:1:1 1|0:1:1 0|1:1:1 0|1:1:1 0|0:0:2 1|1:2:0 1|0:1:1 1|1:2:0 1|1:2:0 1|1:2:0 1|1:1.99:0 0|0:0:2 1|1:2:0 0|1:1:1 1|0:1:1 0|1:1:1 0|1:1:1 1|1:2:0 0|1:1.18:1 1|0:1:1 1|0:1:1 1|1:2:0 0|1:1:1 1|1:2:0 1|1:1.99:0 0|1:1:1 1|0:1:1 1|0:1:1 +21 15764187 STR_869657 CCTTTTTTTTTTTTGA CTTTTTTTTTTGA,CTTTTTTTTCTTGA,CTTTTTTTTTTTGA,CCTTTTTTTTTTTGA,CTTTTTTTTTTTTGA,CTTTTTTTTTTTTTA,CCCTTTTTTTTTTTGA,CCTTTTTTTTTTTTGT,CCTTTTTTTTTTTTTA,CTTTTTTTTTTTTTGA,CCCTTTTTTTTTTTTGA,CCTTTTTTTTTTTTTGA . PASS DR2=0.99,0,0,0,0.99,0,0,0,0,0,0,0;AF=0.0203,0,0,0,0.7561,0,0,0,0,0,0,0;END=15764200;IMP;START=15764189;PERIOD=1;DSLEN=9.0,13.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0:1.5 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|1:1,0,0,0,1,0,0,0,0,0,0,0:0.5 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 1|5:1,0,0,0,1,0,0,0,0,0,0,0:0.5 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0.02,0,0,0,1.62,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0,0,0,0:1.25 5|5:0,0,0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0:1.25 +21 15766892 STR_869660 GGGGAGAGGGAGAGAGAGAGAGAGCAAAGTGTGTGTTTGTGTGTGTGTCTCTGTGTGTGTTTATATTAGAGAGAGAGAGAGACAGAGA GAGGAGAGGGAGAGAGAGCAAAGTGTGTGTTTGTGTGTGTGTCTCTGTGTGTGTTTATATTAGAGAGAGAGAGAGACAGAGA,GGGGAGAGGGAGAGAGAGCAAAGTGTGTGTTTGTGTGTGTGTCTCTGTGTGTGTTTATATTAGAGAGAGAGAGAGACAGAGA . PASS DR2=0,0.99;AF=0,0.7753;END=15766979;IMP;START=15766895;PERIOD=2;DSLEN=39.5,42.5 GT:DS:TRDS 0|0:0,0:2 0|0:0,0:2 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 0|2:0,1:1 2|2:0,2:0 0|2:0,1:1 0|2:0,1:1 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|0:0,1:1 2|2:0,2:0 2|0:0,1:1 2|2:0,2:0 2|2:0,2:0 2|0:0,1:1 0|2:0,1:1 2|0:0,1:1 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 0|2:0,1:1 0|2:0,1:1 2|2:0,2:0 2|0:0,1:1 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|0:0,1:1 2|2:0,2:0 0|2:0,1:1 2|2:0,2:0 0|2:0,1:1 0|2:0,1:1 2|2:0,2:0 2|2:0,1.53:0 2|0:0,1:1 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 2|2:0,2:0 0|2:0,1:1 2|2:0,2:0 2|0:0,1:1 +21 15767380 STR_869661 TTTTTTTTTTTTTTG TTTTTTTTTTTTTG,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTG . PASS DR2=0.97,0.94,0;AF=0.1641,0.0095,0;END=15767393;IMP;START=15767380;PERIOD=1;DSLEN=13.0,15.0 GT:DS:TRDS 0|0:0,0,0:1 0|0:0,0,0:1 0|1:1,0,0:0.5 0|1:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|1:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|1:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 1|0:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 1|1:2,0,0:0 0|1:1,0,0:0.5 0|1:1,0,0:0.5 1|0:1,0,0:0.5 0|0:0.04,0,0:1 0|1:1,0,0:0.5 0|0:0.03,0,0:1 0|0:0,0,0:1 0|0:0.03,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0.03,0,0:1 1|0:1,0,0:0.5 2|0:0,0.95,0:1 0|0:0.01,0,0:1 0|1:1,0,0:0.5 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0,0,0:1 0|0:0.07,0.01,0:1 0|0:0,0,0:1 0|1:1,0,0:0.5 0|0:0,0,0:1 1|0:1.11,0,0:0.5 0|0:0,0,0:1 0|0:0.08,0,0:1 0|0:0.01,0,0:1 0|1:1,0,0:0.5 0|0:0,0,0:1 +21 15768620 STR_869662 TTTTTTTTTTTTT TTTTTTTTTTT,TTTTTTTTTTTT . PASS DR2=0.98,0.94;AF=0.0204,0.3868;END=15768632;IMP;START=15768620;PERIOD=1;DSLEN=11.0,13.0 GT:DS:TRDS 0|0:0,0:2 0|0:0,0:2 2|2:0,2:1 0|1:1,0:1 0|0:0,0:2 2|0:0,0.99:1.5 0|2:0,1:1.5 0|2:0,1:1.5 0|2:0,1:1.5 0|0:0,0:2 2|0:0,1:1.5 0|2:0,1.18:1.5 0|0:0,0:2 2|0:0,1:1.5 2|0:0,1:1.5 0|0:0,0:2 0|0:0,0:2 2|0:0,1.19:1.5 0|0:0,0:2 0|2:0,1:1.5 0|0:0,0.01:2 1|2:1,1:0.5 0|2:0,1.02:1.5 0|0:0,0.04:2 2|0:0,1:1.5 0|2:0,0.93:1.5 0|2:0,1:1.5 0|2:0,0.8:1.5 0|0:0,0:2 0|2:0,1:1.5 0|0:0,0:2 0|2:0,1:1.5 2|2:0,2:1 2|0:0,1:1.5 2|0:0,1:1.5 0|0:0,0.12:2 2|2:0,1.81:1 0|0:0,0:2 0|0:0,0:2 2|2:0,1.8:1 0|0:0.02,0.09:2 2|0:0,1:1.5 2|2:0,2:1 2|0:0,0.99:1.5 2|2:0,2:1 0|2:0,1:1.5 0|2:0.02,0.72:1.5 0|2:0,1:1.5 2|2:0,2:1 0|0:0,0:2 +21 15775538 STR_869665 TGTTTTTTTTTTTTA TGTTTTTTTTTTTA,TTTTTTTTTTTTTA,TGTTTTTTTTTTTTT,TGTTTTTTTTTTTTTA,TGTTTTTTTTTTTTTTA . PASS DR2=0,0,0,1,0;AF=0,0,0,0.1004,0;END=15775551;IMP;START=15775540;PERIOD=1;DSLEN=11.0,14.0 GT:DS:TRDS 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 4|0:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|4:0,0,0,1,0:1 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 4|0:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 4|0:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0.04,0:0.666667 0|0:0,0,0,0,0:0.666667 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 4|0:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 +21 15797631 STR_869672 ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT ATGTATTTTTATTTTATTTTATTTTATTTTATTTATTTT,ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT,ACGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT,ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT,ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT,ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT,ATGTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTATTTT . PASS DR2=0,0.99,0,0.89,0.71,0.46,0;AF=0,0.1207,0,0.5651,0.0722,0.0306,0;END=15797689;IMP;START=15797637;PERIOD=5;DSLEN=6.6,12.6 GT:DS:TRDS 0|4:0,0,0,1,0,0,0:1 0|0:0,0,0,0,0,0,0:1.33333 4|2:0,1,0,0.98,0,0.02,0:0.5 4|2:0,1,0,1,0,0,0:0.5 4|4:0,0,0,2,0,0,0:0.666667 4|4:0,0,0,1.79,0.17,0.05,0:0.666667 0|2:0,1,0,0,0,0,0:0.833333 5|4:0,0,0,1.12,0.88,0,0:0.833333 0|4:0,0,0,1,0,0.24,0:1 0|4:0,0,0,1,0,0,0:1 4|4:0,0,0,1.9,0.1,0,0:0.666667 5|2:0,1,0,0.25,0.75,0,0:0.666667 4|4:0,0,0,2,0,0,0:0.666667 4|6:0,0,0,0.8,0.01,1.17,0:1.16667 4|5:0,0,0,1.05,0.93,0.02,0:0.833333 4|0:0,0,0,1,0,0.06,0:1 4|4:0,0,0,2,0,0,0:0.666667 2|5:0,1,0,0.34,0.66,0,0:0.666667 0|0:0,0,0,0,0,0.45,0:1.33333 0|4:0,0,0,1,0,0.25,0:1 4|0:0,0,0,0.99,0.01,0,0:1 2|2:0,2,0,0,0,0,0:0.333333 4|2:0,1,0,0.99,0.01,0,0:0.5 4|0:0,0,0,1.43,0,0,0:1 2|5:0,1,0,0.08,0.92,0,0:0.666667 0|4:0,0,0,0.82,0.18,0.22,0:1 0|4:0,0,0,0.98,0.02,0,0:1 4|4:0,0,0,2,0,0,0:0.666667 4|0:0,0,0,1,0,0.07,0:1 4|4:0,0,0,1.92,0.03,0.05,0:0.666667 4|0:0,0,0,1,0,0,0:1 4|5:0,0,0,1,1,0,0:0.833333 4|4:0,0,0,1.95,0.05,0,0:0.666667 2|0:0,1,0,0,0,0,0:0.833333 4|4:0,0,0,1.72,0.2,0.08,0:0.666667 4|4:0,0,0,1.85,0.15,0,0:0.666667 4|0:0,0,0,0.97,0.03,0,0:1 0|4:0,0,0,0.99,0.01,0.23,0:1 0|4:0,0,0,1,0,0.09,0:1 4|4:0,0,0,1.9,0.1,0,0:0.666667 4|4:0,0.07,0,1.74,0.03,0,0:0.666667 4|0:0,0,0,1,0,0,0:1 4|2:0,1,0,1,0,0,0:0.5 4|4:0,0,0,1.96,0.04,0,0:0.666667 2|4:0,1,0,0.82,0.13,0.05,0:0.5 4|4:0,0,0,2,0,0,0:0.666667 4|4:0,0,0,1.99,0,0.01,0:0.666667 0|4:0,0,0,1,0,0.01,0:1 5|4:0,0,0,1.18,0.81,0.01,0:0.833333 4|0:0,0,0,1,0,0,0:1 +21 15802046 STR_869673 CCAAAAAAAAAAAAAA CCAAAAAAAAAAA,CAAAAAAAAAAAAA,CCAAAAAAAAAAAA,CCAAAAAAAAAAAAA,CAAAAAAAAAAAAAAA,CCAAAAAAAAAAAAAAA . PASS DR2=0,0,0.98,0.95,0,0;AF=0,0,0.6116,0.0307,0,0;END=15802061;IMP;START=15802048;PERIOD=1;DSLEN=11.0,15.0 GT:DS:TRDS 0|3:0,0,1,0,0,0:1 0|0:0,0,0,0,0,0:1.5 3|0:0,0,1,0,0,0:1 3|0:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 3|4:0,0,1,1,0,0:0.75 0|0:0,0,0,0,0,0:1.5 3|3:0,0,2,0,0,0:0.5 0|3:0,0,1,0,0,0:1 0|3:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 3|0:0,0,0.99,0.01,0,0:1 3|4:0,0,1.04,0.96,0,0:0.75 3|0:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 3|0:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 0|3:0,0,0.99,0.01,0,0:1 0|0:0,0,0,0,0,0:1.5 0|3:0,0,1,0,0,0:1 3|0:0,0,1,0,0,0:1 0|0:0,0,0,0,0,0:1.5 3|0:0,0,0.99,0.01,0,0:1 3|0:0,0,1.42,0,0,0:1 0|3:0,0,1,0,0,0:1 0|3:0,0,0.99,0.01,0,0:1 0|3:0,0,1,0,0,0:1 3|3:0,0,1.99,0.01,0,0:0.5 3|0:0,0,1,0,0,0:1 3|3:0,0,1.97,0.03,0,0:0.5 4|0:0,0,0,1,0,0:1.25 3|3:0,0,2,0,0,0:0.5 3|3:0,0,2,0,0,0:0.5 0|0:0,0,0,0,0,0:1.5 3|3:0,0,2,0,0,0:0.5 3|3:0,0,2,0,0,0:0.5 3|0:0,0,0.97,0.03,0,0:1 0|3:0,0,1,0,0,0:1 0|3:0,0,1,0,0,0:1 3|3:0,0,1.99,0.01,0,0:0.5 3|3:0,0,1.81,0,0,0:0.5 3|0:0,0,1,0,0,0:1 3|0:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 0|3:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 3|3:0,0,2,0,0,0:0.5 0|3:0,0,1,0,0,0:1 3|3:0,0,2,0,0,0:0.5 3|0:0,0,1,0,0,0:1 +21 15806086 STR_869675 ACAAACAAACAAACAAACCC ACAAACAAACAAACAAAACCC,ACAAACAAACAAACAAAACCG . PASS DR2=1,0;AF=0.7695,0;END=15806103;IMP;START=15806086;PERIOD=4;DSLEN=4.5,4.75 GT:DS:TRDS 0|1:1,0:1 0|0:0,0:0 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 0|1:1,0:1 1|1:2,0:2 0|1:1,0:1 0|1:1,0:1 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 1|0:1,0:1 1|1:2,0:2 1|0:1,0:1 1|1:2,0:2 1|1:2,0:2 0|0:0,0:0 0|1:1,0:1 1|0:1,0:1 1|1:2,0:2 1|1:2,0:2 1|1:1.99,0:2 1|1:2,0:2 0|1:1,0:1 0|1:1,0:1 1|1:2,0:2 1|0:1,0:1 1|1:2,0:2 1|0:1,0:1 1|1:2,0:2 1|1:2,0:2 1|0:1,0:1 1|1:2,0:2 1|1:2,0:2 1|0:1,0:1 0|1:1,0:1 0|1:1,0:1 1|1:2,0:2 1|1:1.96,0:2 1|0:1,0:1 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 1|1:2,0:2 0|1:1,0:1 1|1:2,0:2 1|0:1,0:1 +21 15808066 STR_869677 TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATATATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TCGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGCATGAATGTATGTATGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0.92,0,0.66,0,0,0,0.38,0,0.83,0,0,0.55,0,0.58,0,0,0.6,0,0,0,0,0,0;AF=0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0.02,0.0891,0,0.034,0,0,0,0.0109,0,0.5038,0,0,0.0299,0,0.0397,0,0,0.0226,0,0,0,0,0,0;END=15808165;IMP;START=15808068;PERIOD=2;DSLEN=43.0,53.0 GT:DS:TRDS 0|32:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0:1.4 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 24|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0.01,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 24|15:0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 6|24:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.8 24|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 24|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07,0,0,0,0,0,1.81,0,0,0.09,0,0.03,0,0,0,0,0,0,0,0,0:1.2 0|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|29:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36,0,0,0,0,0.61,0,0,0.03,0,0,0,0,0,0:1.3 24|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81,0,0,0.02,0,0.18,0,0,0,0,0,0,0,0,0:1.2 24|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0.94,0,0,0.03,0,0,0,0,0.03,0,0,0,0,0,0:1 24|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 27|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31,0,0,0.69,0,0,0,0,0,0,0,0,0,0,0:1.3 24|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,1.94,0,0,0.02,0,0.02,0,0,0,0,0,0,0,0,0:1.2 24|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 24|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98,0,0,0.01,0,0,0,0,0.01,0,0,0,0,0,0:0.8 16|24:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0.01,0,0.95,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 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PASS DR2=0,0.91,0,0,0,0.67,0,0.95;AF=0,0.153,0,0,0,0.2072,0,0.0647;END=15825105;IMP;START=15825087;PERIOD=1;DSLEN=17.0,21.0 GT:DS:TRDS 0|6:0,0,0,0,0,1.01,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0:0.75 0|6:0,0,0,0,0,1,0,0:1.25 8|0:0,0,0,0,0,0,0,1:1.5 0|8:0,0.02,0,0,0,0.07,0,1:1.5 0|2:0,1,0,0,0,0.08,0,0:0.75 0|0:0,0.07,0,0,0,0.43,0,0:1 0|0:0,0.01,0,0,0,0.15,0,0:1 0|0:0,0,0,0,0,0.57,0,0:1 0|0:0,0.14,0,0,0,0.22,0,0:1 0|2:0,1.01,0,0,0,0.27,0,0:0.75 0|8:0,0,0,0,0,0.02,0,1:1.5 0|0:0,0,0,0,0,0.03,0,0:1 0|0:0,0.01,0,0,0,0.07,0,0:1 2|0:0,1,0,0,0,0.02,0,0:0.75 6|8:0,0,0,0,0,0.89,0,1:1.75 2|0:0,1,0,0,0,0.27,0,0:0.75 0|0:0,0,0,0,0,0.04,0,0:1 0|0:0,0,0,0,0,0,0,0:1 6|0:0,0,0,0,0,1.08,0,0:1.25 6|2:0,1,0,0,0,1,0,0:1 6|2:0,1.13,0,0,0,0.73,0,0:1 6|0:0,0.02,0,0,0,1.06,0,0.01:1.25 2|0:0,1,0,0,0,0.19,0,0:0.75 0|6:0,0.06,0,0,0,0.71,0,0:1.25 0|6:0,0.01,0,0,0,0.58,0,0:1.25 6|6:0,0.37,0,0,0,1.19,0,0:1.5 0|0:0,0,0,0,0,0.02,0,0:1 0|0:0,0.14,0,0,0,0.26,0,0:1 8|0:0,0,0,0,0,0.01,0,1:1.5 2|0:0,1,0,0,0,0,0,0:0.75 6|0:0,0,0,0,0,0.86,0,0:1.25 2|0:0,1,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0.29,0,0.08:1 2|6:0,1.01,0,0,0,0.5,0,0:1 6|0:0,0.19,0,0,0,0.61,0,0:1.25 0|6:0,0.01,0,0,0,0.97,0,0:1.25 0|6:0,0.01,0,0,0,1.02,0,0:1.25 2|0:0,1.06,0,0,0,0.34,0,0:0.75 8|6:0,0,0,0,0,1,0,1:1.75 0|0:0,0,0,0,0,0.02,0,0:1 0|2:0,1,0,0,0,0,0,0:0.75 8|0:0,0,0,0,0,0.8,0,0.38:1.5 2|0:0,1,0,0,0,0,0,0:0.75 6|0:0,0,0,0,0,1,0,0:1.25 0|6:0,0.02,0,0,0,1.27,0,0:1.25 0|0:0,0.01,0,0,0,0.04,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0.04,0,0:1 +21 15834332 STR_869688 AAACAAACAAACAAACAAACAAACAAACAAA AAACAAACAAACAAACAAACAAA,AAACAAACAAACAAACAAACAAACAAA,AAACAAACAAACAAACAAACAAACAAACAAACAAA,AAACAAACAAACAAACAAACAAACAAACAAACAAACAAA,AAACAAACAAACAAACAAACAAACAAACAAACAAAGAAA . PASS DR2=0,1,0.93,0,0;AF=0,0.02,0.1511,0,0;END=15834362;IMP;START=15834332;PERIOD=4;DSLEN=5.75,9.75 GT:DS:TRDS 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|3:0,0,1,0,0:1.25 0|2:0,1,0,0,0:0.75 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|3:0,0,1.01,0,0:1.25 0|0:0,0,0.27,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|3:0,0,1,0,0:1.25 0|0:0,0,0.07,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 3|0:0,0,1,0,0:1.25 0|3:0,0,1,0,0:1.25 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|0:0,0,0.01,0,0:1 0|0:0,0,0.05,0,0:1 2|3:0,1,1,0,0:1 0|3:0,0,1,0,0:1.25 0|0:0,0,0.07,0,0:1 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0.02,0,0:1 0|0:0,0,0.03,0,0:1 0|0:0,0,0.02,0,0:1 0|0:0,0,0.02,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0.02,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0,0,0:1 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|3:0,0,1,0,0:1.25 0|0:0,0,0.47,0,0:1 3|0:0,0,1,0,0:1.25 0|0:0,0,0,0,0:1 0|0:0,0,0.01,0,0:1 0|0:0,0,0.02,0,0:1 0|0:0,0,0,0,0:1 0|0:0,0,0.02,0,0:1 +21 15839559 STR_869690 TTTTTTTTTTTTT TTTTTTTTTTT,TTTTTTTTTTTT . PASS DR2=0,0.94;AF=0,0.1951;END=15839571;IMP;START=15839559;PERIOD=1;DSLEN=11.0,13.0 GT:DS:TRDS 0|0:0,0:2 0|0:0,0:2 0|2:0,1:1.5 0|2:0,1:1.5 2|0:0,1:1.5 0|2:0,1:1.5 0|2:0,1:1.5 0|0:0,0:2 0|0:0,0.01:2 0|0:0,0:2 0|0:0,0:2 0|2:0,1:1.5 0|2:0,1:1.5 0|0:0,0:2 0|0:0,0:2 2|0:0,1:1.5 0|2:0,0.9:1.5 2|0:0,1.05:1.5 0|0:0,0:2 0|0:0,0:2 0|0:0,0.02:2 2|2:0,2:1 0|2:0,1:1.5 0|0:0,0.05:2 2|0:0,0.87:1.5 0|0:0,0:2 0|0:0,0:2 0|0:0,0.05:2 0|0:0,0:2 0|0:0,0:2 2|0:0,0.98:1.5 0|0:0,0.02:2 0|0:0,0:2 2|0:0,0.98:1.5 0|0:0,0:2 0|0:0,0:2 0|0:0,0.07:2 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 2|0:0,0.97:1.5 0|0:0,0:2 0|2:0,1.01:1.5 0|0:0,0.49:2 2|0:0,1:1.5 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 0|0:0,0.01:2 0|0:0,0:2 +21 15851120 STR_869692 TCTCCTCTCCTCTCCTCTCCTCTTCTTTTCTTTTCTTTCTTTTC TCTCCTCTCCTCTCCTCTTCTTTTCTTTTCTTTCTTTTC,TCTCCTCTCCTCTCCTCTCCTCTTCTTTTCTTTCTTTCTTTTC,TCTCCTCTCCTCCCCTCTCCTCTTCTTTTCTTTTCTTTCTTTTC,TCTCCTCTCCTCTCCCCTCCTCTTCTTTTCTTTTCTTTCTTTTC,TCTCCTCTCGTCTCCTCTCCTCTTCTTTTCTTTTCTTTCTTTTC,TCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTTTTCTTTTCTTTCTTTTC . PASS DR2=0.94,0,0,0,0.79,0;AF=0.1233,0,0,0,0.0699,0;END=15851163;IMP;START=15851120;PERIOD=5;DSLEN=7.8,9.8 GT:DS:TRDS 0|5:0,0,0,0,1,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|1:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|1:0.58,0,0,0,0.4,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|1:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|1:1,0,0,0,0,0:0.5 0|0:0.03,0,0,0,0.23,0:1 0|0:0,0,0,0,0,0:1 0|5:0,0,0,0,0.82,0:1 0|1:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|1:0.99,0,0,0,0,0:0.5 0|1:1,0,0,0,0,0:0.5 0|0:0.01,0,0,0,0,0:1 0|5:0,0,0,0,0.66,0:1 0|0:0,0,0,0,0,0:1 0|0:0.04,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0,0,0:0.5 0|0:0.02,0,0,0,0,0:1 5|0:0,0,0,0,1,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|5:0,0,0,0,0.89,0:1 5|1:1.03,0,0,0,0.63,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0.01,0,0,0,0,0:1 0|0:0.01,0,0,0,0,0:1 0|0:0.01,0,0,0,0.33,0:1 1|0:0.99,0,0,0,0.01,0:0.5 1|0:0.61,0,0,0,0.02,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 5|0:0,0,0,0,1,0:1 0|0:0,0,0,0,0,0:1 0|1:0.99,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 +21 15852624 STR_869695 TTTTTTTTTTTT TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT . PASS DR2=0.91,0,0;AF=0.1457,0,0;END=15852635;IMP;START=15852624;PERIOD=1;DSLEN=10.0,13.0 GT:DS:TRDS 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 1|1:2,0,0:0 0|0:0,0,0:1.33333 0|1:1,0,0:0.666667 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0.46,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|1:1,0,0:0.666667 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|1:1,0,0:0.666667 0|0:0.04,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|1:1,0,0:0.666667 1|0:1,0,0:0.666667 0|1:1,0,0:0.666667 0|1:1,0,0:0.666667 0|0:0.16,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0.08,0,0:1.33333 0|0:0,0,0:1.33333 1|0:1,0,0:0.666667 0|0:0.01,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|1:1.08,0,0:0.666667 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0.23,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0.05,0,0:1.33333 1|0:1,0,0:0.666667 0|0:0.42,0,0:1.33333 0|0:0.01,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0.01,0,0:1.33333 0|0:0,0,0:1.33333 0|1:1,0,0:0.666667 0|0:0,0,0:1.33333 +21 15865893 STR_869700 ACAACACACACACACACACACACACACACACACACACACACA AACACACACACACACACACACACA,AACACACACACACACACACACACACA,AACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACG,ACAACACACACACACACACACACACACACACTCACACACACA,ACAACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACG,ACAACACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACACG,ACAACACACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACACACG,ACAACACACACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACACACACG,ACAACACACACACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACACACACACACA,ACAACACACACACACACACACACACACACACACACACACACACACACACACACACG . PASS DR2=0.85,0.56,0,0,0,0,0,0,0.69,0,0.43,0,0.56,0,0,0,0,0,0;AF=0.3831,0.0085,0,0,0,0,0,0,0.3497,0,0.0578,0,0.02,0,0,0,0,0,0;END=15865934;IMP;START=15865896;PERIOD=2;DSLEN=10.5,26.5 GT:DS:TRDS 9|9:0.32,0,0,0,0,0,0,0,1.53,0,0.03,0,0,0,0,0,0,0,0:1.25 1|1:1.76,0,0,0,0,0,0,0,0.23,0,0.01,0,0,0,0,0,0,0,0:0 1|9:1,0,0,0,0,0,0,0,0.89,0,0.1,0,0,0,0,0,0,0,0:0.625 1|1:1.44,0,0,0,0,0,0,0,0.32,0,0,0,0,0,0,0,0,0,0:0 1|9:1,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0,0,0,0,0:0.625 13|1:0.63,0,0,0,0,0,0,0,0.04,0,0,0,0.95,0,0,0,0,0,0:0.75 9|11:0,0,0,0,0,0,0,0,0.94,0,0.71,0,0,0,0,0,0,0,0:1.3125 0|9:0,0,0,0,0,0,0,0,0.91,0,0.04,0,0.01,0,0,0,0,0,0:1.1875 9|1:0.64,0,0,0,0,0,0,0,0.81,0,0.35,0,0.19,0,0,0,0,0,0:0.625 0|9:0.09,0.18,0,0,0,0,0,0,0.9,0,0,0,0,0,0,0,0,0,0:1.1875 9|0:0.01,0,0,0,0,0,0,0,0.63,0,0.09,0,0.33,0,0,0,0,0,0:1.1875 0|1:0.83,0,0,0,0,0,0,0,0.16,0,0,0,0,0,0,0,0,0,0:0.5625 9|9:0,0,0,0,0,0,0,0,1.76,0,0.24,0,0,0,0,0,0,0,0:1.25 0|0:0.11,0,0,0,0,0,0,0,0.53,0,0.12,0,0,0,0,0,0,0,0:1.125 0|0:0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0:1.125 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 9|9:0.05,0,0,0,0,0,0,0,1.54,0,0.14,0,0.27,0,0,0,0,0,0:1.25 9|9:0,0,0,0,0,0,0,0,1.69,0,0.07,0,0,0,0,0,0,0,0:1.25 9|0:0,0,0,0,0,0,0,0,0.81,0,0.18,0,0,0,0,0,0,0,0:1.1875 2|1:1.14,0.67,0,0,0,0,0,0,0.03,0,0.16,0,0,0,0,0,0,0,0:0.0625 9|9:0.18,0,0,0,0,0,0,0,1.73,0,0.01,0,0.08,0,0,0,0,0,0:1.25 1|0:1.31,0,0,0,0,0,0,0,0.21,0,0.01,0,0,0,0,0,0,0,0:0.5625 0|0:0.05,0,0,0,0,0,0,0,0.37,0,0.01,0,0.01,0,0,0,0,0,0:1.125 9|9:0,0,0,0,0,0,0,0,1.86,0,0,0,0.11,0,0,0,0,0,0:1.25 1|11:1,0,0,0,0,0,0,0,0.23,0,0.73,0,0,0,0,0,0,0,0:0.6875 1|9:0.89,0,0,0,0,0,0,0,1,0,0.06,0,0,0,0,0,0,0,0:0.625 1|0:1,0,0,0,0,0,0,0,0.17,0,0.09,0,0,0,0,0,0,0,0:0.5625 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 1|1:1.98,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0:0 9|9:0,0,0,0,0,0,0,0,1.78,0,0.06,0,0.01,0,0,0,0,0,0:1.25 0|9:0.04,0,0,0,0,0,0,0,1.02,0,0.01,0,0,0,0,0,0,0,0:1.1875 0|1:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.5625 1|9:1.36,0,0,0,0,0,0,0,0.57,0,0.05,0,0,0,0,0,0,0,0:0.625 1|1:1.43,0,0,0,0,0,0,0,0.29,0,0.08,0,0,0,0,0,0,0,0:0 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 1|1:1.86,0,0,0,0,0,0,0,0.11,0,0,0,0.03,0,0,0,0,0,0:0 9|1:1,0,0,0,0,0,0,0,0.58,0,0.01,0,0,0,0,0,0,0,0:0.625 9|1:1,0,0,0,0,0,0,0,0.94,0,0.06,0,0,0,0,0,0,0,0:0.625 9|9:0.01,0,0,0,0,0,0,0,1.43,0,0.24,0,0,0,0,0,0,0,0:1.25 1|1:1.93,0,0,0,0,0,0,0,0.07,0,0,0,0,0,0,0,0,0,0:0 9|0:0.09,0,0,0,0,0,0,0,0.82,0,0.05,0,0,0,0,0,0,0,0:1.1875 0|9:0.02,0,0,0,0,0,0,0,0.96,0,0.17,0,0,0,0,0,0,0,0:1.1875 11|9:0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0:1.3125 9|1:1.09,0,0,0,0,0,0,0,0.88,0,0,0,0,0,0,0,0,0,0:0.625 1|9:1,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0,0,0,0,0:0.625 9|1:1,0,0,0,0,0,0,0,0.88,0,0,0,0,0,0,0,0,0,0:0.625 9|1:1.01,0,0,0,0,0,0,0,0.69,0,0.04,0,0,0,0,0,0,0,0:0.625 1|9:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.625 0|9:0.03,0,0,0,0,0,0,0,0.63,0,0.86,0,0,0,0,0,0,0,0:1.1875 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 +21 15871808 STR_869703 TTAACAAAAAAAAAAAAAAAAA TTAACAAAAAAAAAAAAA,TTAACAAAAAAAAAAAAAA,TTAAAAAAAAAAAAAAAAAA,TTAACAAAAAAAAAAAAAAA,TTAAAAAAAAAAAAAAAAAAA,TTAACAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAAAAAA,TTAAAAAAAAAAAAAAAAAAAA,TTAAAAAAAAAAAAAAAAAAAAA,TTAACAAAAAAAAAAAAAAAAAA,TTAACAAAAAAAAAAAAAAAAAAA . PASS DR2=0,0,0.68,0.87,0,0.96,0,0,0,0,0.52;AF=0,0,0.0604,0.6824,0,0.1546,0,0,0,0,0.0104;END=15871829;IMP;START=15871813;PERIOD=1;DSLEN=13.0,19.0 GT:DS:TRDS 4|4:0,0,0.02,1.97,0,0,0,0,0,0,0:0.666667 4|6:0,0,0,1.01,0,0.99,0,0,0,0,0:0.833333 4|4:0,0,0,1.9,0,0.1,0,0,0,0,0:0.666667 0|6:0,0,0,0.04,0,1.01,0,0,0,0,0:1.16667 4|4:0,0,0,1.95,0,0,0,0,0,0,0:0.666667 4|0:0,0,0.01,1,0,0.01,0,0,0,0,0.08:1 4|3:0,0,0.86,1.12,0,0,0,0,0,0,0:0.666667 4|4:0,0,0,2,0,0,0,0,0,0,0:0.666667 4|6:0,0,0,1.01,0,0.99,0,0,0,0,0:0.833333 4|4:0,0,0,1.82,0,0.1,0,0,0,0,0:0.666667 4|4:0,0,0.06,1.94,0,0,0,0,0,0,0:0.666667 4|4:0,0,0.07,1.93,0,0.01,0,0,0,0,0:0.666667 4|4:0,0,0.01,1.99,0,0,0,0,0,0,0:0.666667 3|4:0,0,0.95,1.05,0,0,0,0,0,0,0:0.666667 4|4:0,0,0,2,0,0,0,0,0,0,0:0.666667 4|6:0,0,0,1,0,1,0,0,0,0,0:0.833333 4|4:0,0,0,2,0,0,0,0,0,0,0:0.666667 4|4:0,0,0,1.97,0,0.03,0,0,0,0,0:0.666667 4|4:0,0,0,1.98,0,0,0,0,0,0,0:0.666667 0|6:0,0,0,0.02,0,1,0,0,0,0,0:1.16667 4|4:0,0,0.02,1.97,0,0,0,0,0,0,0:0.666667 6|4:0,0,0.42,0.58,0,1,0,0,0,0,0:0.833333 3|3:0,0,1.58,0.39,0,0.01,0,0,0,0,0:0.666667 4|4:0,0,0,1.99,0,0,0,0,0,0,0:0.666667 6|4:0,0,0,0.99,0,1,0,0,0,0,0:0.833333 4|4:0,0,0.01,1.66,0,0,0,0,0,0,0:0.666667 0|4:0,0,0.36,0.77,0,0.02,0,0,0,0,0:1 4|0:0,0,0,1,0,0,0,0,0,0,0:1 6|4:0,0,0,1,0,1,0,0,0,0,0:0.833333 4|4:0,0,0,1.99,0,0,0,0,0,0,0:0.666667 4|4:0,0,0.01,1.99,0,0,0,0,0,0,0:0.666667 4|6:0,0,0,1,0,1,0,0,0,0,0:0.833333 4|4:0,0,0.01,1.99,0,0,0,0,0,0,0:0.666667 4|0:0,0,0,0.95,0,0.08,0,0,0,0,0:1 6|6:0,0,0,0,0,2,0,0,0,0,0:1 4|6:0,0,0.01,0.95,0,1.03,0,0,0,0,0:0.833333 4|0:0,0,0,1.05,0,0,0,0,0,0,0.26:1 4|11:0,0,0,1.01,0,0,0,0,0,0,0.69:1.33333 4|4:0,0,0.07,1.93,0,0,0,0,0,0,0:0.666667 4|0:0,0,0,0.95,0,0.05,0,0,0,0,0:1 4|4:0,0,0.07,1.93,0,0,0,0,0,0,0:0.666667 4|4:0,0,0,2,0,0,0,0,0,0,0:0.666667 3|4:0,0,0.96,1.04,0,0,0,0,0,0,0:0.666667 4|0:0,0,0.02,0.95,0,0.02,0,0,0,0,0:1 6|4:0,0,0,0.99,0,1,0,0,0,0,0:0.833333 4|6:0,0,0,1,0,1,0,0,0,0,0:0.833333 4|4:0,0,0,1.99,0,0,0,0,0,0,0.01:0.666667 4|4:0,0,0.02,1.97,0,0.01,0,0,0,0,0:0.666667 4|4:0,0,0.49,1.51,0,0,0,0,0,0,0:0.666667 4|6:0,0,0,1,0,1,0,0,0,0,0:0.833333 +21 15880160 STR_869705 AAAAAAAAAAAAAA AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA . PASS DR2=0,0.54,0.97,0,0;AF=0,0.0107,0.2544,0,0;END=15880173;IMP;START=15880160;PERIOD=1;DSLEN=12.0,17.0 GT:DS:TRDS 0|0:0,0,0,0,0:0.8 0|3:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 0|0:0,0,0,0,0:0.8 0|0:0,0,0,0,0:0.8 0|0:0,0.07,0,0,0:0.8 0|0:0,0,0,0,0:0.8 3|0:0,0,1,0,0:1 0|3:0,0,1,0,0:1 0|0:0,0,0.05,0,0:0.8 0|0:0,0,0,0,0:0.8 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 3|0:0,0,0.85,0,0:1 0|3:0,0,1,0,0:1 0|3:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 0|3:0,0,0.73,0,0:1 0|3:0,0,1,0,0:1 0|3:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 0|3:0,0,1,0,0:1 3|3:0,0,1.91,0,0:1.2 0|0:0,0,0,0,0:0.8 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 0|3:0,0,0.93,0,0:1 0|0:0,0,0,0,0:0.8 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 0|0:0,0,0,0,0:0.8 3|3:0,0,2,0,0:1.2 0|0:0,0,0,0,0:0.8 0|0:0,0,0,0,0:0.8 3|3:0,0,2,0,0:1.2 0|3:0,0,1,0,0:1 0|0:0,0.27,0,0,0:0.8 0|2:0,0.71,0,0,0:0.6 0|0:0,0,0,0,0:0.8 0|0:0,0,0,0,0:0.8 0|3:0,0,1,0,0:1 0|0:0,0,0,0,0:0.8 3|0:0,0,0.93,0,0:1 0|0:0,0,0.01,0,0:0.8 3|0:0,0,1,0,0:1 0|3:0,0,1,0,0:1 0|0:0,0.02,0.01,0,0:0.8 0|0:0,0,0,0,0:0.8 0|0:0,0,0.01,0,0:0.8 0|3:0,0,1,0,0:1 +21 15885818 STR_869709 TTAGCTGTGTGTGTTTGTGTGTGCGTGTGTGTGTGTCTGTGT TCAGCTGTGTGTGTTTGTGTGTGCGTGTGTGTGTCTGTGT,TCAGCTGTGTGTGTTTGTGTGTGCGTGTGTGTGTGTCTGTGT . PASS DR2=1,0;AF=0.3701,0;END=15885859;IMP;START=15885823;PERIOD=2;DSLEN=17.5,18.5 GT:DS:TRDS 1|1:2,0:0 0|0:0,0:2 0|1:1,0:1 0|0:0,0:2 0|1:1,0:1 1|0:1,0:1 1|0:1,0:1 0|1:1,0:1 1|0:1,0:1 0|1:1,0:1 1|0:1,0:1 0|1:1,0:1 1|1:2,0:0 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 1|1:2,0:0 1|0:1.01,0:1 1|0:1,0:1 0|0:0,0:2 1|1:2,0:0 0|0:0,0:2 0|0:0,0:2 1|1:2,0:0 0|1:1,0:1 0|1:1,0:1 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 1|1:2,0:0 0|1:1,0:1 0|0:0,0:2 0|1:1,0:1 0|0:0,0:2 0|0:0,0:2 1|0:1,0:1 0|0:0,0:2 1|0:1,0:1 0|1:1,0:1 0|0:0,0:2 1|0:1,0:1 0|1:1,0:1 0|1:1,0:1 0|0:0,0:2 0|1:1,0:1 1|0:1,0:1 0|0:0,0:2 0|0:0,0:2 0|1:1,0:1 1|0:1,0:1 +21 15894222 STR_869715 AAAAAAAAAAAAA AAAAAAAAAAAA,AAAATAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA . PASS DR2=0.6,0,1,0;AF=0.0158,0,0.361,0;END=15894234;IMP;START=15894222;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 3|3:0,0,2,0:1.33333 0|0:0,0,0.02,0:0.666667 0|3:0,0,1,0:1 0|0:0.04,0,0,0:0.666667 0|3:0,0,1,0:1 3|0:0,0,1,0:1 3|0:0,0,1,0:1 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|3:0,0,1,0:1 3|3:0,0,2,0:1.33333 0|0:0.01,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 3|3:0,0,2,0:1.33333 3|0:0,0,1,0:1 3|0:0,0,1,0:1 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1 0|0:0,0,0.02,0:0.666667 0|0:0.01,0,0,0:0.666667 3|3:0,0,2,0:1.33333 0|3:0,0,1,0:1 0|3:0,0,1,0:1 0|0:0,0,0,0:0.666667 0|0:0.01,0,0,0:0.666667 0|0:0,0,0,0:0.666667 3|3:0,0,2,0:1.33333 0|3:0.01,0,1,0:1 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1 1|1:1.34,0,0.01,0:0 3|0:0.15,0,1,0:1 0|3:0,0,1,0:1 0|0:0,0,0,0:0.666667 3|0:0,0,1,0:1 0|3:0.01,0,1.01,0:1 0|3:0,0,1,0:1 0|0:0,0,0.02,0:0.666667 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|0:0,0,0.02,0:0.666667 0|0:0,0,0,0:0.666667 0|3:0,0,1,0:1 3|0:0,0,1,0:1 +21 15906838 STR_869723 TTTTTTTCTTTTTTTTTTT TTTTTTCTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTCTTCTTTTTTTTT,TTTTTTTCTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTCTTTTTTTTTTTTT . PASS DR2=0,0,0,0,0.96,0,0;AF=0,0,0,0,0.5355,0,0;END=15906856;IMP;START=15906838;PERIOD=1;DSLEN=18.0,21.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0:0.666667 5|0:0,0,0,0,1.05,0,0:1 5|0:0,0,0,0,1.01,0,0:1 0|5:0,0,0,0,1,0,0:1 5|5:0,0,0,0,2,0,0:1.33333 0|0:0,0,0,0,0,0,0:0.666667 5|5:0,0,0,0,1.95,0,0:1.33333 5|0:0,0,0,0,1.01,0,0:1 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,1,0,0:1 0|0:0,0,0,0,0,0,0:0.666667 5|5:0,0,0,0,2,0,0:1.33333 5|5:0,0,0,0,2,0,0:1.33333 5|0:0,0,0,0,1.4,0,0:1 5|0:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 0|0:0,0,0,0,0,0,0:0.666667 5|0:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,0.96,0,0:1 5|0:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,0.96,0,0:1 5|5:0,0,0,0,2,0,0:1.33333 5|0:0,0,0,0,1,0,0:1 5|0:0,0,0,0,1,0,0:1 5|5:0,0,0,0,2,0,0:1.33333 5|0:0,0,0,0,1,0,0:1 5|0:0,0,0,0,1,0,0:1 5|5:0,0,0,0,2,0,0:1.33333 0|5:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,0.97,0,0:1 5|0:0,0,0,0,1.02,0,0:1 0|0:0,0,0,0,0.01,0,0:0.666667 0|5:0,0,0,0,1,0,0:1 5|0:0,0,0,0,0.77,0,0:1 5|5:0,0,0,0,2,0,0:1.33333 5|0:0,0,0,0,1,0,0:1 0|0:0,0,0,0,0.05,0,0:0.666667 0|0:0,0,0,0,0.4,0,0:0.666667 5|5:0,0,0,0,1.99,0,0:1.33333 5|5:0,0,0,0,2,0,0:1.33333 5|0:0,0,0,0,1,0,0:1 0|5:0,0,0,0,1,0,0:1 +21 15913645 STR_869727 AAAAAAAAAAAAAAA AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA . PASS DR2=0,0.99,0,0,0;AF=0,0.5079,0,0,0;END=15913659;IMP;START=15913645;PERIOD=1;DSLEN=12.0,17.0 GT:DS:TRDS 0|0:0,0,0,0,0:1.2 2|0:0,1,0,0,0:0.8 2|0:0,1.01,0,0,0:0.8 0|2:0,1,0,0,0:0.8 2|2:0,2,0,0,0:0.4 0|0:0,0,0,0,0:1.2 2|2:0,2,0,0,0:0.4 2|0:0,1,0,0,0:0.8 0|0:0,0,0,0,0:1.2 2|0:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 0|0:0,0,0,0,0:1.2 2|2:0,2,0,0,0:0.4 2|2:0,2,0,0,0:0.4 2|0:0,1.01,0,0,0:0.8 2|0:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 2|0:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 2|2:0,2,0,0,0:0.4 2|0:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 2|2:0,2,0,0,0:0.4 2|0:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 2|2:0,2,0,0,0:0.4 0|2:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 2|0:0,1,0,0,0:0.8 0|0:0,0,0,0,0:1.2 0|2:0,1,0,0,0:0.8 2|0:0,0.72,0,0,0:0.8 2|2:0,2,0,0,0:0.4 2|0:0,1,0,0,0:0.8 0|0:0,0.04,0,0,0:1.2 0|0:0,0.01,0,0,0:1.2 2|2:0,2,0,0,0:0.4 2|2:0,2,0,0,0:0.4 2|0:0,1,0,0,0:0.8 0|2:0,1,0,0,0:0.8 +21 15917858 STR_869730 TTTTTTTTTTTA TTTTTTTTTA,TTTTTTTTTT,TTTTTTTTTTA,TTTTTTTTTTT,TTTTTTTTTTTT . PASS DR2=0.98,0,0,0.99,0;AF=0.2149,0,0,0.2818,0;END=15917868;IMP;START=15917858;PERIOD=1;DSLEN=9.0,11.0 GT:DS:TRDS 0|0:0,0,0,0,0:2 1|0:1,0,0,0,0:1 1|0:1,0,0,0,0:1 0|1:1,0,0,0,0:1 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:2 4|1:1,0,0,1,0:0.5 4|0:0,0,0,1,0:1.5 0|0:0,0,0,0,0:2 1|0:1,0,0,0,0:1 0|1:1,0,0,0,0:1 4|0:0,0,0,1,0:1.5 0|0:0,0,0,0,0:2 4|1:1,0,0,1,0:0.5 1|4:1,0,0,1,0:0.5 1|0:1,0,0,0,0:1 0|0:0,0,0,0,0:2 0|1:1,0,0,0,0:1 0|4:0,0,0,1,0:1.5 0|0:0.01,0,0,0,0:2 0|0:0,0,0,0,0:2 1|0:1,0,0,0,0:1 0|4:0,0,0,1,0:1.5 0|4:0,0,0,1,0:1.5 4|0:0,0,0,1,0:1.5 1|0:1,0,0,0,0:1 0|4:0,0,0,1,0:1.5 1|0:1,0,0,0,0:1 4|1:1,0,0,1,0:0.5 4|0:0,0,0,1,0:1.5 1|0:1,0,0,0,0:1 4|4:0,0,0,2,0:1 1|0:1,0,0,0,0:1 1|0:1,0,0,0,0:1 4|4:0,0,0,2,0:1 0|4:0,0,0,1,0:1.5 0|4:0,0,0,1,0:1.5 4|0:0,0,0,1,0:1.5 1|0:1,0,0,0,0:1 0|0:0,0,0,0,0:2 0|4:0,0,0,1,0:1.5 1|0:0.46,0,0,0.18,0:1 4|4:0,0,0,2,0:1 4|0:0,0,0,1,0:1.5 0|0:0.02,0,0,0,0:2 0|0:0,0,0,0,0:2 4|1:1,0,0,1,0:0.5 1|1:2,0,0,0,0:0 4|0:0,0,0,1,0:1.5 0|4:0,0,0,1,0:1.5 +21 15922250 STR_869732 AAAAAAAAAAACTCTT AAAAAAAAAAAC,AAAAAAAAAACTCTT,AAAAAAAAAACCTCTT,AAAAAAAAAAAACTCTT,AAAAAAAAAAAAACTCTT,AAAAAAAAAAAAAACTCTT . PASS DR2=0,0,0.11,0,0.98,0;AF=0,0,0.0012,0,0.2943,0;END=15922260;IMP;START=15922250;PERIOD=1;DSLEN=7.0,14.0 GT:DS:TRDS 0|0:0,0,0,0,0.01,0:1.14286 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0.01,0:1.14286 0|0:0,0,0,0,0,0:1.14286 5|5:0,0,0,0,2,0:1.71429 0|0:0,0,0,0,0.01,0:1.14286 5|0:0,0,0,0,1,0:1.42857 5|0:0,0,0,0,1.01,0:1.42857 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0:1.14286 5|0:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0.01,0:1.14286 5|0:0,0,0,0,1,0:1.42857 0|5:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0.01,0:1.14286 0|5:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0.01,0:1.14286 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0.01,0:1.14286 0|5:0,0,0,0,1,0:1.42857 0|5:0,0,0,0,1,0:1.42857 5|0:0,0,0,0,1,0:1.42857 0|0:0,0,0.12,0,0,0:1.14286 0|5:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0.01,0:1.14286 5|0:0,0,0,0,1,0:1.42857 5|0:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0,0:1.14286 5|5:0,0,0,0,2,0:1.71429 0|0:0,0,0,0,0.02,0:1.14286 0|0:0,0,0,0,0.01,0:1.14286 5|5:0,0,0,0,2,0:1.71429 0|5:0,0,0,0,1.02,0:1.42857 0|5:0,0,0,0,1,0:1.42857 5|0:0,0,0,0,1.01,0:1.42857 0|0:0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0:1.14286 0|5:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0.21,0:1.14286 5|5:0,0,0,0,2,0:1.71429 5|0:0,0,0,0,1.05,0:1.42857 5|0:0,0,0,0,0.99,0:1.42857 0|0:0,0,0,0,0,0:1.14286 5|0:0,0,0,0,1,0:1.42857 0|0:0,0,0,0,0,0:1.14286 5|0:0,0,0,0,1.01,0:1.42857 0|5:0,0,0,0,1,0:1.42857 +21 15927004 STR_869734 TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGAGA TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTGAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTGAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGTGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGTGG,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTGA,TTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGAGA,TTTTGTTTTCTTTTTCTTTCTTTTTTTTTTTTTTTGAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTGAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTAGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTGA,TTTTGTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTGAGA . PASS DR2=0,0.97,0,0,0,0,0.05,0,0,0,0.99,0,0,0;AF=0,0.2198,0,0,0,0,0.0032,0,0,0,0.2819,0,0,0;END=15927037;IMP;START=15927004;PERIOD=1;DSLEN=32.0,36.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 2|0:0,1,0,0,0,0,0.01,0,0,0,0,0,0,0:0.75 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 11|2:0,1,0,0,0,0,0,0,0,0,1,0,0,0:1 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0,0,0,0.02,0,0,0,0.01,0,0,0:1 11|2:0,1,0,0,0,0,0,0,0,0,1,0,0,0:1 2|11:0,1,0,0,0,0,0,0,0,0,1,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0.01,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 2|0:0,0.56,0,0,0,0,0.01,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0.02,0,0,0,0,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 2|0:0,1,0,0,0,0,0.05,0,0,0,0,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 2|0:0,0.99,0,0,0,0,0,0,0,0,0,0,0,0:0.75 11|2:0,1,0,0,0,0,0,0,0,0,1,0,0,0:1 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 2|0:0,1,0,0,0,0,0.04,0,0,0,0,0,0,0:0.75 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.5 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 11|11:0,0.01,0,0,0,0,0,0,0,0,1.99,0,0,0:1.5 0|11:0,0,0,0,0,0,0.03,0,0,0,1,0,0,0:1.25 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0.4,0,0,0,0,0,0,0,0,0.18,0,0,0:1 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0:1.5 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0.02,0,0,0,0,0.04,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0.11,0,0,0,0,0,0,0:1 11|2:0,1,0,0,0,0,0,0,0,0,1,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0,0:0.5 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0:1.25 +21 15937604 STR_869737 ATCCAAAAAAAAAAAAAAAAACA ATCCAAAAAAAAAAAAAAAACA,ACCAAAAAAAAAAAAAAAAAACA,ACCCAAAAAAAAAAAAAAAAACA,ATCAAAAAAAAAAAAAAAAAACA,ATCCAAAAAAAAAAAAAAAAACT,ATCCAAAAAACAAAAAAAAAACA,AACCAAAAAAAAAAAAAAAAAACA,ACCCAAAAAAAAAAAAAAAAAACA,ATCAAAAAAAAAAAAAAAAAAACA,ATCCAAAAAAAAAAAAAAAAAACA,ATCCAAAAAAAAAAAAAAAAAAACA . PASS DR2=0,0,0,0,0.2,0,0,0,0,0.95,0;AF=0,0,0,0,0.002,0,0,0,0,0.3704,0;END=15937624;IMP;START=15937608;PERIOD=1;DSLEN=16.0,19.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|10:0,0,0,0,0,0,0,0,0,2,0:1.33333 10|10:0,0,0,0,0,0,0,0,0,2,0:1.33333 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|10:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|10:0,0,0,0,0,0,0,0,0,1.61,0:1.33333 0|10:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,0.64,0:1 0|10:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|10:0,0,0,0,0.2,0,0,0,0,0.7,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|10:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|0:0,0,0,0,0,0,0,0,0,0.58,0:1 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0.41,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0.1,0:0.666667 0|10:0,0,0,0,0,0,0,0,0,1,0:1 10|10:0,0,0,0,0,0,0,0,0,2,0:1.33333 10|0:0,0,0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:0.666667 +21 15939618 STR_869739 TTGAAAAAAAAAAAAACAC TTGAAAAAAAAAAAACAC,TTGAAAAAAAAAACACAC,TGGAAAAAAAAAAAAACAC,TTAAAAAAAAAAAAAACAC,TTGAAAAAAAAAAAAAAAA,TGAAAAAAAAAAAAAAACAC,TGGAAAAAAAAAAAAAACAC,TTGAAAAAAAAAAAAAACAC,TGGAAAAAAAAAAAAAAACAC . PASS DR2=0.97,0,0,0,0,0,0.97,1,0;AF=0.3206,0,0,0,0,0,0.1541,0.01,0;END=15939633;IMP;START=15939621;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|1:1,0,0,0,0,0,0,0,0:0.333333 7|7:0,0,0,0,0,0,2,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0:1 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|1:1,0,0,0,0,0,0,0,0:0.333333 1|1:2,0,0,0,0,0,0,0,0:0 1|1:2,0,0,0,0,0,0,0,0:0 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0:0.666667 0|1:1,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|8:0,0,0,0,0,0,0,1,0:1 1|1:1.51,0,0,0,0,0,0.03,0,0:0 0|1:1,0,0,0,0,0,0,0,0:0.333333 0|7:0,0,0,0,0,0,1,0,0:1 7|0:0,0,0,0,0,0,1,0,0:1 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|1:1,0,0,0,0,0,0,0,0:0.333333 0|0:0.14,0,0,0,0,0,0.07,0,0:0.666667 7|1:1,0,0,0,0,0,1,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0:1 1|0:1,0,0,0,0,0,0,0,0:0.333333 1|7:1,0,0,0,0,0,1,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 1|0:1,0,0,0,0,0,0,0,0:0.333333 7|1:0.98,0,0,0,0,0,1.01,0,0:0.666667 0|7:0,0,0,0,0,0,1,0,0:1 0|1:1,0,0,0,0,0,0,0,0:0.333333 7|0:0,0,0,0,0,0,1,0,0:1 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0,0,0,0,0,0,0:0.666667 0|1:1,0,0,0,0,0,0,0,0:0.333333 0|0:0.31,0,0,0,0,0,0.14,0,0:0.666667 1|7:1,0,0,0,0,0,1,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0:1 0|0:0.02,0,0,0,0,0,0.13,0,0:0.666667 0|0:0.09,0,0,0,0,0,0.04,0,0:0.666667 7|1:1,0,0,0,0,0,1,0,0:0.666667 1|0:1,0,0,0,0,0,0,0,0:0.333333 1|0:1,0,0,0,0,0,0,0,0:0.333333 0|7:0,0,0,0,0,0,1,0,0:1 +21 15941450 STR_869740 TAAAAAAAAAAATAAAAATAGC TAAAAAAAAATAAAAATAGC,TAAAAAAAAAATAAAAATAGC,TTAAAAAAAAATAAAAATAGC,TTAAAAAAAAATAAAAATAGG,TAAAAATAAAAATAAAAATAGC . PASS DR2=0,0.94,0.96,0,0;AF=0,0.2079,0.3215,0,0;END=15941467;IMP;START=15941451;PERIOD=1;DSLEN=15.0,17.0 GT:DS:TRDS 0|0:0,0,0,0,0:2 3|0:0,0,1,0,0:1.5 3|0:0,0,1,0,0:1.5 0|3:0,0,1,0,0:1.5 2|2:0,2,0,0,0:1 0|0:0,0,0,0,0:2 2|2:0,2,0,0,0:1 3|0:0,0,1,0,0:1.5 0|0:0,0,0,0,0:2 3|0:0,0,1,0,0:1.5 0|2:0,1,0,0,0:1.5 3|0:0,0,1,0,0:1.5 0|3:0,0,1,0,0:1.5 3|3:0,0,2,0,0:1 3|3:0,0,2,0,0:1 3|0:0,0,1,0,0:1.5 0|0:0,0,0,0,0:2 0|3:0,0,1,0,0:1.5 0|0:0,0,0,0,0:2 3|0:0,0,1,0,0:1.5 0|2:0,1,0,0,0:1.5 3|3:0,0.24,1.53,0,0:1 0|3:0,0,1,0,0:1.5 0|2:0,1,0,0,0:1.5 2|0:0,1,0,0,0:1.5 3|0:0,0,1,0,0:1.5 0|3:0,0,1,0,0:1.5 0|0:0,0.36,0.18,0,0:2 2|3:0,1,1,0,0:1 2|0:0,1,0,0,0:1.5 3|0:0,0,1,0,0:1.5 3|2:0,1,1,0,0:1 3|0:0,0,1,0,0:1.5 3|0:0,0,1,0,0:1.5 2|3:0,1.02,0.98,0,0:1 0|2:0,1,0,0,0:1.5 0|3:0,0,1,0,0:1.5 2|0:0,1,0,0,0:1.5 3|0:0,0,1,0,0:1.5 0|0:0,0,0,0,0:2 0|3:0,0,1,0,0:1.5 2|0:0,0.44,0.34,0,0:1.5 3|2:0,1,1,0,0:1 2|0:0,1,0,0,0:1.5 0|2:0,0.67,0.02,0,0:1.5 0|0:0,0.07,0.11,0,0:2 2|3:0,1,1,0,0:1 3|2:0,1,0.98,0,0:1 3|0:0,0,1,0,0:1.5 0|2:0,1,0,0,0:1.5 +21 15956321 STR_869749 TTTTTTTTTTTT TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTCTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT . PASS DR2=0,0,0.64,0.81,0.06,0.76,0;AF=0,0,0.1716,0.0102,0.0024,0.608,0;END=15956332;IMP;START=15956321;PERIOD=1;DSLEN=9.0,16.0 GT:DS:TRDS 6|6:0,0,0.07,0,0,1.93,0:1.71429 6|6:0,0,0.03,0,0,1.97,0:1.71429 6|6:0,0,0.49,0.01,0.02,1.48,0:1.71429 6|0:0,0,0,0,0,1,0:1.28571 3|0:0,0,0.87,0,0,0.13,0:1 6|3:0,0,1.21,0,0,0.78,0:1.42857 6|0:0,0,0.49,0,0,0.51,0:1.28571 6|3:0,0,0.63,0,0,1.37,0:1.42857 6|6:0,0,0.03,0,0.01,1.96,0:1.71429 6|6:0,0,0.22,0,0.02,1.76,0:1.71429 6|0:0,0,0.02,0,0,0.98,0:1.28571 6|3:0,0,1.03,0,0,0.97,0:1.42857 3|6:0,0,0.98,0,0,1.02,0:1.42857 6|6:0,0,0.46,0,0,1.54,0:1.71429 6|3:0,0,0.55,0,0.01,1.44,0:1.42857 0|3:0,0,0.78,0,0,0.22,0:1 6|4:0,0,0,0.91,0.04,1.05,0:1.57143 6|6:0,0,0.14,0,0.01,1.5,0:1.71429 6|6:0,0,0,0,0,2,0:1.71429 6|6:0,0,0.02,0,0,1.98,0:1.71429 3|0:0,0,0.87,0,0,0.13,0:1 0|0:0,0,0,0,0,0,0:0.857143 6|0:0,0,0.01,0,0,0.99,0:1.28571 3|6:0,0,0.91,0,0,1.09,0:1.42857 6|6:0,0,0.03,0,0,1.97,0:1.71429 6|6:0,0,0.19,0,0,1.8,0:1.71429 6|3:0,0,0.92,0,0,1.08,0:1.42857 6|0:0,0,0,0,0,1,0:1.28571 6|6:0,0,0.01,0,0,1.99,0:1.71429 6|6:0,0,0.01,0,0,1.9,0:1.71429 6|6:0,0,0.02,0,0,1.98,0:1.71429 6|6:0,0,0,0,0,2,0:1.71429 6|6:0,0,0.09,0.06,0,1.84,0:1.71429 6|3:0,0,0.64,0,0,0.94,0:1.42857 6|6:0,0,0,0,0,2,0:1.71429 6|6:0,0,0.08,0.01,0.03,1.88,0:1.71429 3|0:0,0,0.99,0,0,0.01,0:1 6|6:0,0,0.33,0,0,1.67,0:1.71429 0|3:0,0,0.93,0,0,0.07,0:1 6|6:0,0,0.02,0.02,0,1.96,0:1.71429 3|6:0,0,0.76,0.01,0,1.18,0:1.42857 0|3:0,0,0.97,0,0,0.03,0:1 0|6:0,0,0,0,0,1,0:1.28571 6|0:0,0,0.02,0,0,0.98,0:1.28571 6|0:0,0,0.1,0,0,1.06,0:1.28571 6|3:0,0,0.8,0.02,0.11,1.07,0:1.42857 0|0:0,0,0,0,0,0,0:0.857143 0|0:0,0,0,0,0,0,0:0.857143 6|6:0,0,0.24,0,0,1.76,0:1.71429 6|6:0,0,0.18,0,0,1.82,0:1.71429 +21 15960066 STR_869751 TTATTTATTTATTTATTTATTTTTTAAA TTATTTATTTATTTATTTATTTATTAAA,TTATTTATTTATTTATTTATTTATTTAA,TTATTTATTTATTTATTTATTTTTTTAA,TTATTTATTTATTTATTTATTTTTTTAT,TTATTTATTTATTTATTTATTTTTTTTA,TTATTTATTTATTTATTTTTTTTTTAAA,TTATTTATTTATTTATTTTTTTTTTTAA,TTATTTATTTATTTATTTATTTTTTTAAT,TTATTTATTTATTTATTTATTTATTTTTTAAA,TTATTTATTTATTTATTTATTTATTTTTTTAA,TTATTTATTTATTTATTTATTTTTTTTTTTAA . PASS DR2=0,0,0.85,0,0,0,0,0,0,0.62,0.14;AF=0,0,0.6146,0,0,0,0,0,0,0.0681,0.0029;END=15960091;IMP;START=15960066;PERIOD=4;DSLEN=6.5,7.5 GT:DS:TRDS 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,1.92,0,0,0,0,0,0,0,0:0 3|0:0,0,0.64,0,0,0,0,0,0,0,0:0 3|3:0,0,1.94,0,0,0,0,0,0,0.03,0.03:0 3|0:0,0,0.51,0,0,0,0,0,0,0.44,0:0 3|3:0,0,1.74,0,0,0,0,0,0,0.06,0.2:0 3|3:0,0,1.99,0,0,0,0,0,0,0.01,0:0 3|3:0,0,1.98,0,0,0,0,0,0,0,0.02:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 3|3:0,0,1.76,0,0,0,0,0,0,0.01,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 0|3:0,0,0.99,0,0,0,0,0,0,0.01,0:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 10|3:0,0,1.32,0,0,0,0,0,0,0.66,0:1 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|0:0,0,0.97,0,0,0,0,0,0,0.01,0:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 3|0:0,0,0.55,0,0,0,0,0,0,0.45,0:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 3|3:0,0,1.98,0,0,0,0,0,0,0,0:0 3|3:0,0,1.99,0,0,0,0,0,0,0.01,0:0 3|10:0,0,1.06,0,0,0,0,0,0,0.91,0:1 10|0:0,0,0.21,0,0,0,0,0,0,0.75,0.03:1 0|3:0,0,1.01,0,0,0,0,0,0,0,0:0 0|3:0,0,0.48,0,0,0,0,0,0,0.18,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 3|0:0,0,1.35,0,0,0,0,0,0,0,0:0 3|0:0,0,1.14,0,0,0,0,0,0,0,0:0 0|3:0,0,1,0,0,0,0,0,0,0,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 10|0:0,0,0,0,0,0,0,0,0,0.75,0:1 10|0:0,0,0.08,0,0,0,0,0,0,0.93,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0:0 3|3:0,0,1.58,0,0,0,0,0,0,0.42,0:0 3|3:0,0,1.66,0,0,0,0,0,0,0.18,0:0 0|3:0,0,1,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0,0:0 3|0:0,0,1,0,0,0,0,0,0,0,0:0 0|10:0,0,0.03,0,0,0,0,0,0,0.49,0:1 10|3:0,0,1.42,0,0,0,0,0,0,0.51,0:1 0|0:0,0,0.18,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0.02,0:0 3|3:0,0,2,0,0,0,0,0,0,0,0:0 +21 15974571 STR_869756 TTTTTCTTTTTTTTTA TTTTTCTTTTTTTTA,TTTTTCTTTTTTTTT,TTTTTCTTTTTTTTAA,TTTTTCTTTTTTTTTTA . PASS DR2=0,0,0,0.64;AF=0,0,0,0.0161;END=15974585;IMP;START=15974571;PERIOD=1;DSLEN=14.0,16.0 GT:DS:TRDS 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 4|0:0,0,0,0.71:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0.01:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0.02:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 4|0:0,0,0,0.72:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0.16:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 +21 15978129 STR_869758 ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT ATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTA,ATTTATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTAATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTTTTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT . PASS DR2=0,0,0,0,0,0.6,0.78,0,0.7,0,0;AF=0,0,0,0,0,0.032,0.023,0,0.1272,0,0;END=15978176;IMP;START=15978129;PERIOD=4;DSLEN=8.0,15.0 GT:DS:TRDS 9|9:0,0,0,0,0,0,0,0,1.35,0,0:1.42857 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0.37,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.1,0,0:1.14286 7|7:0,0,0,0,0,0,1.88,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.19,0,0:1.14286 6|0:0,0,0,0,0,0.61,0,0,0.28,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|9:0,0,0,0,0,0,0,0,1,0,0:1.28571 6|0:0,0,0,0,0,0.66,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0.05,0,0.02,0,0:1.14286 9|0:0,0,0,0,0,0,0.01,0,0.99,0,0:1.28571 0|0:0,0,0,0,0,0,0.02,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0.02,0,0.05,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.02,0,0:1.14286 0|9:0,0,0,0,0,0,0,0,1,0,0:1.28571 0|0:0,0,0,0,0,0,0.03,0,0.25,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|9:0,0,0,0,0,0,0.02,0,1.01,0,0:1.28571 0|0:0,0,0,0,0,0,0,0,0.21,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.4,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.02,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.06,0,0:1.14286 0|0:0,0,0,0,0,0,0.07,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 6|0:0,0,0,0,0,0.71,0,0,0.2,0,0:1 0|0:0,0,0,0,0,0,0,0,0.02,0,0:1.14286 9|0:0,0,0,0,0,0,0,0,1.04,0,0:1.28571 0|0:0,0,0,0,0,0,0.01,0,0,0,0:1.14286 6|0:0,0,0,0,0,0.7,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0.03,0,0.02,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.01,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.24,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.01,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.04,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0.14,0,0,0,0:1.14286 9|0:0,0,0,0,0,0,0,0,0.72,0,0:1.28571 0|0:0,0,0,0,0,0,0,0,0.38,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.26,0,0:1.14286 0|0:0,0,0,0,0,0.16,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0.16,0,0:1.14286 9|0:0,0,0,0,0,0,0,0,0.93,0,0:1.28571 9|0:0,0,0,0,0,0,0,0,0.72,0,0:1.28571 0|9:0,0,0,0,0,0,0,0,1.02,0,0:1.28571 0|0:0,0,0,0,0,0,0.02,0,0,0,0:1.14286 +21 15987635 STR_869764 AAAAAAGAAAAAAAAA AAAAAAGAAAAAAAAAA,AAAAAAGAAAAAAAAAAA . PASS DR2=0.99,0;AF=0.6415,0;END=15987650;IMP;START=15987635;PERIOD=1;DSLEN=16.0,18.0 GT:DS:TRDS 0|0:0,0:0 0|0:0,0:0 1|1:1.98,0:1 0|1:1,0:0.5 0|0:0,0:0 1|1:1.97,0:1 1|1:2,0:1 0|1:1,0:0.5 0|1:1.01,0:0.5 1|0:1,0:0.5 0|1:1,0:0.5 0|0:0,0:0 1|0:1,0:0.5 1|0:1,0:0.5 0|0:0.01,0:0 1|1:2,0:1 0|1:1,0:0.5 1|0:1,0:0.5 0|1:1,0:0.5 0|1:1,0:0.5 1|1:2,0:1 1|1:2,0:1 1|1:1.98,0:1 1|1:2,0:1 0|0:0.18,0:0 1|0:1,0:0.5 0|1:1,0:0.5 1|1:1.99,0:1 0|0:0,0:0 1|1:2,0:1 0|0:0,0:0 1|1:2,0:1 1|0:1,0:0.5 0|1:1.01,0:0.5 1|1:2,0:1 1|1:2,0:1 1|1:2,0:1 1|1:2,0:1 1|0:1,0:0.5 0|1:1,0:0.5 1|1:2,0:1 1|0:1,0:0.5 1|1:2,0:1 1|1:2,0:1 1|1:2,0:1 1|1:2,0:1 0|1:1,0:0.5 1|1:2,0:1 1|1:2,0:1 1|0:1.02,0:0.5 +21 15990972 STR_869767 TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGCGCGCGTGCGCGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCGCGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGCGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGCGCGCGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGCGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCACGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGTGT,TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0,0,0,0,1,0,0,0,0,0,0,0.76,0,0,0,0,0.89,0,0,0.91,0,0,0,0.98,0,0,0.25,0,0,0,0,0.88,0.47,0,0.99,0,0,0.7,0,0,0.16,0,0,0,0,0.03,0,0,0,0.5,0,0.78,0,0,0,0,0,0;AF=0,0,0,0,0,0,0,0.1198,0,0,0,0,0,0,0.0121,0,0,0,0,0.0226,0,0,0.0327,0,0,0,0.0714,0,0,0.0144,0,0,0,0,0.4371,0.0247,0,0.0707,0,0,0.0181,0,0,0.0041,0,0,0,0,0.0014,0,0,0,0.0221,0,0.0804,0,0,0,0,0,0;END=15991048;IMP;START=15990972;PERIOD=2;DSLEN=18.5,39.5 GT:DS:TRDS 27|27:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.52381 0|20:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.08,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07,0,0,0,0,0,0:1.66667 35|35:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0.01,0,0,0.03,0,0,0,0,0,0,0.34,0,0,0,0,1.59,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.52381 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PASS DR2=0,0,0,0,0.98,0.89,0.29,0,0,0,0.98,0.94,0.01,0.77,0,0.05,0,0;AF=0,0,0,0,0.5255,0.0445,0.0031,0,0,0,0.1167,0.2656,0.0002,0.0427,0,0.0017,0,0;END=16022138;IMP;START=16022094;PERIOD=2;DSLEN=19.5,30.5 GT:DS:TRDS 14|12:0,0,0,0,0,0,0,0,0,0,0,0.75,0,1.25,0,0,0,0:1.18182 12|5:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 5|12:0,0,0,0,0.96,0.04,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 12|5:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 12|12:0,0,0,0,0,0,0,0,0,0,0,1.97,0,0,0,0.03,0,0:1.09091 12|5:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 11|5:0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0:0.727273 12|12:0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0:1.09091 12|11:0,0,0,0,0,0,0,0,0,0,1,0.97,0,0,0,0.03,0,0:1.09091 12|5:0,0,0,0,1,0,0,0,0,0,0,0.96,0,0,0,0.04,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 12|12:0,0,0,0,0,0,0,0,0,0,0,1.88,0,0.12,0,0,0,0:1.09091 5|12:0,0,0,0,0.99,0.01,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 5|12:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 12|12:0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0:1.09091 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 12|5:0,0,0,0,1,0,0,0,0,0,0,0.98,0,0.02,0,0,0,0:0.727273 5|12:0,0,0,0,1,0,0,0,0,0,0,0.7,0,0.22,0,0.08,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 12|11:0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0:1.09091 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 11|5:0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 5|12:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 14|5:0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,0:0.818182 12|11:0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0:1.09091 11|5:0,0,0,0,1,0,0,0,0,0,0.99,0,0.01,0,0,0,0,0:0.727273 5|12:0,0,0,0,1,0,0,0,0,0,0,0.97,0,0.03,0,0,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 12|5:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 6|6:0,0,0,0,0.28,1.72,0,0,0,0,0,0,0,0,0,0,0,0:0.545455 6|12:0,0,0,0,0.01,0.99,0,0,0,0,0,1,0,0,0,0,0,0:0.818182 5|11:0,0,0,0,1,0,0.3,0,0,0,0.7,0,0,0,0,0,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 11|5:0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0:0.727273 11|5:0,0,0,0,1,0,0.01,0,0,0,0.99,0,0,0,0,0,0,0:0.727273 5|12:0,0,0,0,1,0,0,0,0,0,0,0.65,0,0.35,0,0,0,0:0.727273 12|11:0,0,0,0,0,0,0,0,0,0,1,0.72,0,0.28,0,0,0,0:1.09091 5|11:0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0:0.727273 5|12:0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0:0.727273 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 6|5:0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0:0.454545 5|11:0,0,0,0,1,0,0,0,0,0,0.99,0,0.01,0,0,0,0,0:0.727273 6|5:0,0,0,0,1.31,0.69,0,0,0,0,0,0,0,0,0,0,0,0:0.454545 14|5:0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,0:0.818182 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.363636 +21 16026172 STR_869777 ACACACACACACACACACA ACACACACACACA . PASS DR2=1;AF=0.81;END=16026190;IMP;START=16026172;PERIOD=2;DSLEN=6.5,9.5 GT:DS:TRDS 0|0:0:2 1|1:2:0 1|1:2:0 1|1:2:0 1|1:2:0 0|1:1:1 0|1:1:1 1|1:2:0 1|0:1:1 1|1:2:0 1|1:2:0 1|1:2:0 1|1:2:0 1|0:1:1 1|1:2:0 1|1:2:0 0|1:1:1 1|1:2:0 1|1:2:0 1|0:1:1 1|1:2:0 1|1:2:0 0|1:1:1 1|1:2:0 1|1:2:0 1|1:2:0 1|0:1:1 0|1:1:1 1|0:1:1 1|1:2:0 1|1:2:0 1|1:2:0 1|1:2:0 1|0:1:1 1|1:2:0 1|1:2:0 0|1:1:1 0|1:1:1 1|1:2:0 1|0:1:1 1|0:1:1 1|1:2:0 1|1:2:0 1|1:2:0 1|0:1:1 1|1:2:0 0|1:1:1 1|1:2:0 1|1:2:0 1|1:2:0 +21 16032496 STR_869779 TCAAAAAAAAAAAAATTTG TCAAAAAAAAAAATTTG,TCAAAAAAAAAAAATTTG,TCAAAAAAAAAAAAAATTT,TCAAAAAAAAAAAAAATTTG,TAAAAAAAAAAAAAAAATTTG,TCAAAAAAAAAAAAAAATTTG,TCAAAAAAAAAAAAAATTTTG,TCAAAAAAAAAAAAAAAATTTG . PASS DR2=0,0,0,1,0,1,0,0;AF=0,0,0,0.57,0,0.31,0,0;END=16032510;IMP;START=16032498;PERIOD=1;DSLEN=11.0,16.0 GT:DS:TRDS 6|6:0,0,0,0,0,2,0,0:1.6 6|4:0,0,0,1,0,1,0,0:1.4 4|6:0,0,0,1,0,1,0,0:1.4 6|4:0,0,0,1,0,1,0,0:1.4 6|6:0,0,0,0,0,2,0,0:1.6 6|4:0,0,0,1,0,1,0,0:1.4 0|4:0,0,0,1,0,0,0,0:1 6|6:0,0,0,0,0,2,0,0:1.6 6|0:0,0,0,0,0,1,0,0:1.2 6|4:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 6|6:0,0,0,0,0,2,0,0:1.6 4|6:0,0,0,1,0,1,0,0:1.4 4|6:0,0,0,1,0,1,0,0:1.4 6|6:0,0,0,0,0,2,0,0:1.6 4|4:0,0,0,2,0,0,0,0:1.2 6|4:0,0,0,1,0,1,0,0:1.4 4|6:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 6|0:0,0,0,0,0,1,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 0|4:0,0,0,1,0,0,0,0:1 4|4:0,0,0,2,0,0,0,0:1.2 4|6:0,0,0,1,0,1,0,0:1.4 6|4:0,0,0,1,0,1,0,0:1.4 6|0:0,0,0,0,0,1,0,0:1.2 0|4:0,0,0,1,0,0,0,0:1 4|6:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 6|4:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 4|6:0,0,0,1,0,1,0,0:1.4 4|0:0,0,0,1,0,0,0,0:1 4|4:0,0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 0|4:0,0,0,1,0,0,0,0:1 0|4:0,0,0,1,0,0,0,0:1 4|6:0,0,0,1,0,1,0,0:1.4 6|0:0,0,0,0,0,1,0,0:1.2 4|0:0,0,0,1,0,0,0,0:1 4|6:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 4|0:0,0,0,1,0,0,0,0:1 4|4:0,0,0,2,0,0,0,0:1.2 6|4:0,0,0,1,0,1,0,0:1.4 4|4:0,0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 4|4:0,0,0,2,0,0,0,0:1.2 +21 16044472 STR_869788 TTTTTTTTTTTTTTTTG TTTTTTTTTTTG,TTTTTTTTTTTTG,TTTTTTTTTTTTTG,TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTG . PASS DR2=0,0,1,0.01,0.94,0.45,0,0;AF=0,0,0.2395,0.001,0.6276,0.0154,0,0;END=16044487;IMP;START=16044472;PERIOD=1;DSLEN=11.0,17.0 GT:DS:TRDS 5|5:0,0,0,0,2,0,0,0:1.33333 3|5:0,0,1,0,1,0,0,0:1 5|3:0,0,0.98,0.02,1,0,0,0:1 3|5:0,0,1,0,1,0,0,0:1 3|3:0,0,2,0,0,0,0,0:0.666667 5|5:0,0,0,0,2,0,0,0:1.33333 0|5:0,0,0,0,1,0,0,0:1.5 3|3:0,0,1.99,0.01,0,0,0,0:0.666667 3|0:0,0,1,0,0,0,0,0:1.16667 3|5:0,0,1,0,1,0,0,0:1 5|6:0,0,0,0,1.36,0.64,0,0:1.33333 3|3:0,0,2,0,0,0,0,0:0.666667 5|3:0,0,1,0,0.97,0.02,0,0:1 5|5:0,0,0,0,1.99,0,0,0:1.33333 3|3:0,0,2,0,0,0,0,0:0.666667 5|5:0,0,0,0,1.84,0.16,0,0:1.33333 5|5:0,0,0,0,2,0,0,0:1.33333 5|3:0,0,1,0,1,0,0,0:1 5|5:0,0,0,0,2,0,0,0:1.33333 3|0:0,0,1,0,0,0,0,0:1.16667 5|5:0,0,0,0,1.99,0.01,0,0:1.33333 5|5:0,0,0,0,1.98,0.02,0,0:1.33333 0|5:0,0,0,0,1,0,0,0:1.5 5|5:0,0,0,0,2,0,0,0:1.33333 5|3:0,0,1,0,1,0,0,0:1 3|5:0,0,1,0,1,0,0,0:1 3|0:0,0,1,0,0,0,0,0:1.16667 0|5:0,0,0,0,1,0,0,0:1.5 5|5:0,0,0,0,2,0,0,0:1.33333 5|5:0,0,0,0,2,0,0,0:1.33333 3|5:0,0,1,0,1,0,0,0:1 5|5:0,0,0,0,2,0,0,0:1.33333 5|3:0,0,1,0,1,0,0,0:1 5|0:0,0,0,0,1,0,0,0:1.5 5|5:0,0,0,0.02,1.98,0,0,0:1.33333 5|5:0,0,0,0,2,0,0,0:1.33333 0|5:0,0,0,0,1,0,0,0:1.5 0|5:0,0,0,0,1.3,0,0,0:1.5 5|3:0,0,0.99,0.01,1,0,0,0:1 3|0:0,0,1,0,0.16,0,0,0:1.16667 5|0:0,0,0,0,0.99,0,0,0:1.5 5|3:0,0,1,0.01,0.99,0,0,0:1 5|5:0,0,0,0,2,0,0,0:1.33333 5|5:0,0,0,0,2,0,0,0:1.33333 5|0:0,0,0,0,1,0,0,0:1.5 5|5:0,0,0,0.02,1.98,0,0,0:1.33333 5|5:0,0,0,0,1.74,0.2,0,0:1.33333 5|5:0,0,0,0,1.52,0.48,0,0:1.33333 5|5:0,0,0,0.01,1.97,0.01,0,0:1.33333 5|5:0,0,0,0,2,0,0,0:1.33333 +21 16049408 STR_869789 AAAAAAAAAAA AAAAAAAAAA,AAAACAAAAAA,AAAAAAAAAAAA,AAAAAAATAAAA . PASS DR2=0.76,0,0.98,0;AF=0.1413,0,0.0102,0;END=16049418;IMP;START=16049408;PERIOD=1;DSLEN=10.0,12.0 GT:DS:TRDS 0|0:0,0,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0.04,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.04,0,0,0:1 0|0:0.02,0,0,0:1 0|0:0,0,0,0:1 0|0:0.1,0,0,0:1 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 1|0:0.95,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|1:1.16,0,0,0:0.5 0|0:0.2,0,0,0:1 0|0:0.02,0,0,0:1 1|0:1.01,0,0,0:0.5 0|0:0.39,0,0,0:1 0|0:0,0,0,0:1 0|3:0,0,1,0:1.5 0|0:0.01,0,0,0:1 0|0:0.43,0,0,0:1 1|1:1.81,0,0,0:0 0|0:0,0,0,0:1 0|0:0.11,0,0,0:1 0|0:0,0,0,0:1 0|0:0.35,0,0,0:1 0|0:0.23,0,0,0:1 0|1:1,0,0,0:0.5 0|0:0.02,0,0,0:1 0|0:0.07,0,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 0|0:0.24,0,0,0:1 0|0:0.19,0,0,0:1 0|0:0.01,0,0,0:1 0|1:0.88,0,0,0:0.5 1|0:0.99,0,0,0:0.5 0|0:0.15,0,0,0:1 0|0:0,0,0.02,0:1 0|0:0.01,0,0,0:1 0|1:0.7,0,0,0:0.5 0|0:0,0,0,0:1 +21 16065430 STR_869794 TTTTTTTTTTTTTG TTTTTTTTTTTTG,TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTG . PASS DR2=0,1,0,0;AF=0,0.6892,0,0;END=16065442;IMP;START=16065430;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 0|0:0,0,0,0:0.666667 2|2:0,1.99,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 0|2:0,1,0,0:1 0|0:0,0,0,0:0.666667 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 0|2:0,0.98,0,0:1 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 2|2:0,2,0,0:1.33333 0|2:0,1,0,0:1 0|2:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 0|2:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|2:0,1.99,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 0|2:0,1,0,0:1 0|0:0,0,0,0:0.666667 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 0|2:0,1,0,0:1 2|2:0,1.97,0,0:1.33333 0|0:0,0,0,0:0.666667 2|2:0,2,0,0:1.33333 0|2:0,1,0,0:1 2|0:0,1,0,0:1 0|0:0,0,0,0:0.666667 2|0:0,1,0,0:1 0|0:0,0,0,0:0.666667 0|2:0,1,0,0:1 0|2:0,1,0,0:1 2|2:0,2,0,0:1.33333 +21 16066276 STR_869795 ATAACACACACACACACACACACACACACACACACACAGGCA ATAACACACACACACACACACACACACACACACAGGCC,ATAACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACAGGCC,AACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACAGGCC,ATAACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACAGGCC,ATAACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACACACACACACACAGGCA,ATAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGGCA . PASS DR2=0.97,0,0,0,0,0.74,0,0.66,0.77,0.58,0.87,0.77,0,0,0;AF=0.3091,0,0,0,0,0.0575,0,0.0232,0.2704,0.0953,0.0585,0.0362,0,0,0;END=16066313;IMP;START=16066279;PERIOD=2;DSLEN=15.5,28.5 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0.09,0,0,0,0,0:0.307692 1|12:0.94,0,0,0,0,0,0,0,0.08,0.04,0,0.93,0,0,0:0.615385 9|1:1,0,0,0,0,0,0,0,0.75,0.01,0.24,0,0,0,0:0.384615 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 1|8:0.98,0,0,0,0,0,0,1,0.02,0,0,0,0,0,0:0.307692 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.538462 0|6:0,0,0,0,0,0.95,0,0,0.05,0,0,0,0,0,0:0.384615 10|1:1,0,0,0,0,0,0,0,0.24,0.76,0,0,0,0,0:0.461538 9|0:0,0,0,0,0,0,0,0,0.83,0.17,0,0,0,0,0:0.538462 1|9:1,0,0,0,0,0,0,0,0.74,0.26,0,0,0,0,0:0.384615 12|6:0,0,0,0,0,0.88,0,0.11,0.01,0,0,1,0,0,0:0.846154 1|1:1.21,0,0,0,0,0.02,0,0.01,0.43,0.31,0,0,0,0,0:0 10|9:0,0,0,0,0,0,0,0,0.94,0.85,0.01,0.2,0,0,0:0.846154 9|0:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.538462 9|9:0,0,0,0,0,0,0,0,1.63,0.37,0,0,0,0,0:0.769231 8|9:0,0,0,0,0,0.42,0,0.57,1.01,0,0,0,0,0,0:0.692308 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.538462 9|1:1,0,0,0,0,0,0,0,0.97,0.03,0,0,0,0,0:0.384615 1|9:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.384615 1|0:1,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.153846 12|10:0,0,0,0,0,0,0,0,0.41,1.05,0,0.54,0,0,0:1.07692 1|1:1.97,0,0,0,0,0,0,0,0,0,0,0.03,0,0,0:0 0|11:0,0,0,0,0,0,0,0,0.21,0,0.79,0,0,0,0:0.692308 9|1:1,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.384615 10|1:0.95,0,0,0,0,0,0,0,0.51,0.54,0,0,0,0,0:0.461538 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 10|9:0,0,0,0,0,0,0,0,1.43,0.57,0,0,0,0,0:0.846154 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0,0,0.19,0,0,0,0,0:0.307692 9|1:0.92,0,0,0,0,0,0,0,1.08,0,0,0,0,0,0:0.384615 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 11|11:0,0,0,0,0,0,0,0,0.3,0,1.7,0,0,0,0:1.07692 11|10:0,0,0,0,0,0,0,0,0.14,0.77,0.97,0.12,0,0,0:1 10|9:0,0,0,0,0,0,0,0,1.25,0.75,0,0,0,0,0:0.846154 1|9:1,0,0,0,0,0,0,0,0.87,0.13,0,0,0,0,0:0.384615 9|9:0,0,0,0,0,0,0,0,2,0,0,0,0,0,0:0.769231 9|1:1,0,0,0,0,0,0,0,0.86,0,0.14,0,0,0,0:0.384615 9|6:0,0,0,0,0,0.65,0,0.18,1.16,0,0,0,0,0,0:0.615385 6|1:1,0,0,0,0,0.87,0,0,0.13,0,0,0,0,0,0:0.230769 1|12:0.93,0,0,0,0,0.01,0,0,0.12,0.15,0,0.79,0,0,0:0.615385 0|9:0,0,0,0,0,0,0,0,1,0.15,0,0,0,0,0:0.538462 9|1:1,0,0,0,0,0,0,0,0.64,0.36,0,0,0,0,0:0.384615 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.692308 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.538462 11|0:0,0,0,0,0,0,0,0.04,0,0,1,0,0,0,0:0.692308 6|6:0,0,0,0,0,1.15,0,0.4,0.01,0,0,0,0,0,0:0.461538 1|1:2,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0 6|10:0,0,0,0,0,0.8,0,0,0.22,0.97,0,0.01,0,0,0:0.692308 10|9:0,0,0,0,0,0,0,0,1,1,0,0,0,0,0:0.846154 +21 16066942 STR_869796 AAAAAAAAAAAA AAAAAAAAAAA,AAAAATACAAAAA . PASS DR2=0.15,0.99;AF=0.0056,0.8386;END=16066953;IMP;START=16066942;PERIOD=1;DSLEN=11.0,13.0 GT:DS:TRDS 0|0:0.09,0:1 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 0|2:0,1:1.5 0|2:0,1:1.5 2|2:0,2:2 2|0:0,1:1.5 2|2:0,2:2 2|2:0,2:2 2|2:0.13,1.83:2 2|2:0,2:2 2|0:0,1:1.5 2|2:0,2:2 2|2:0,2:2 0|2:0,1:1.5 2|2:0,2:2 2|2:0,2:2 2|0:0,1:1.5 2|2:0,2:2 2|2:0,2:2 0|2:0,1:1.5 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 0|0:0.19,0:1 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 2|2:0,1.99:2 0|2:0.15,1:1.5 2|2:0,2:2 2|2:0,2:2 2|0:0,1:1.5 0|2:0,1:1.5 2|0:0,1.04:1.5 0|2:0,1:1.5 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 +21 16074189 STR_869799 TGTGTGTGTGTGTGTGTGTGTGTGTGT TGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGT,TATGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0.85,0.99,0,1,0;AF=0,0,0.0841,0.4425,0,0.04,0;END=16074215;IMP;START=16074189;PERIOD=2;DSLEN=8.5,16.5 GT:DS:TRDS 0|0:0,0,0,0,0,0,0:1.25 3|4:0,0,0.55,1.02,0,0,0:0.75 4|3:0,0,0.76,1.01,0,0,0:0.75 0|0:0,0,0,0,0,0,0:1.25 0|0:0,0,0.49,0,0,0,0:1.25 0|4:0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 4|0:0,0,0,1,0,0,0:1.125 4|0:0,0,0,1,0,0,0:1.125 0|4:0,0,0,1,0,0,0:1.125 4|0:0,0,0,1,0,0,0:1.125 6|0:0,0,0.09,0.06,0,1,0:1.375 4|4:0,0,0,2,0,0,0:1 4|0:0,0,0,1,0,0,0:1.125 4|4:0,0,0,2,0,0,0:1 0|4:0,0,0,1,0,0,0:1.125 0|4:0,0,0,1,0,0,0:1.125 4|0:0,0,0.01,1.01,0,0,0:1.125 0|4:0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 4|4:0,0,0,2,0,0,0:1 0|0:0,0,0.42,0.03,0,0,0:1.25 0|4:0,0,0,1,0,0,0:1.125 4|3:0,0,1,1,0,0,0:0.75 4|0:0,0,0,1.03,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 4|6:0,0,0,1,0,1,0:1.25 4|3:0,0,1,1,0,0,0:0.75 0|0:0,0,0,0,0,0,0:1.25 4|0:0,0,0.09,1.03,0,0,0:1.125 0|0:0,0,0.01,0,0,0,0:1.25 4|4:0,0,0,2,0,0,0:1 4|4:0,0,0,2,0,0,0:1 4|4:0,0,0,2,0,0,0:1 3|4:0,0,1,1,0,0,0:0.75 4|4:0,0,0,2,0,0,0:1 4|3:0,0,1,1,0,0,0:0.75 4|0:0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 0|4:0,0,0,1.07,0,0,0:1.125 0|6:0,0,0,0,0,1,0:1.375 4|0:0,0,0,1,0,0,0:1.125 4|3:0,0,1,0.99,0,0,0:0.75 4|0:0,0,0,1,0,0,0:1.125 0|6:0,0,0,0,0,1,0:1.375 4|0:0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0,0,0:1.25 4|3:0,0,0.99,1,0,0,0:0.75 0|4:0,0,0,1,0,0,0:1.125 4|4:0,0,0,2,0,0,0:1 +21 16074845 STR_869800 TTTTTTTGTTTTTTGTTTTTTTTTGTATTTTTTTTT TTTTTTTGTTTTTTTTTTTTTTTGTATTTTTTTTTT,TTTTTCTGTTTTTTGTTTTTTTTTTGTATTTTTTTTT,TTTTTTTGTTTTTTGTTTTTTTTTGTATTTTTTTTTT,TTTTTTTGTTTTTTGTTTTTTTTTTGTATTTTTTTTT,TTTTTTTGTTTTTTGTTTTTTTTTTTGTATTTTTTTTT . PASS DR2=0,0,0,1,0;AF=0,0,0,0.31,0;END=16074880;IMP;START=16074845;PERIOD=1;DSLEN=36.0,38.0 GT:DS:TRDS 0|0:0,0,0,0,0:0 4|0:0,0,0,1,0:0.5 0|4:0,0,0,1,0:0.5 4|4:0,0,0,2,0:1 4|0:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 4|0:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 4|0:0,0,0,1,0:0.5 4|0:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 0|4:0,0,0,1,0:0.5 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 4|0:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 4|0:0,0,0,1,0:0.5 0|0:0,0,0,0,0:0 0|4:0,0,0,1,0:0.5 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 4|4:0,0,0,2,0:1 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 +21 16078988 STR_869803 GAATTAATGAATGAATGAATT GAATTAATGAATGAATGAATG,GAATTAATGAATGACTGAATGAATT . PASS DR2=0,0.99;AF=0,0.533;END=16079007;IMP;START=16078988;PERIOD=4;DSLEN=5.0,6.0 GT:DS:TRDS 0|0:0,0:0 0|2:0,1:1 2|0:0,1:1 0|0:0,0:0 0|2:0,1:1 0|2:0,1:1 0|2:0,1:1 2|0:0,1:1 2|0:0,1:1 0|2:0,1:1 2|2:0,2:2 2|0:0,1:1 2|2:0,2:2 2|0:0,1:1 2|2:0,2:2 2|2:0,2:2 0|2:0,1:1 2|0:0,1:1 0|2:0,1:1 0|0:0,0:0 2|2:0,2:2 0|0:0,0:0 0|2:0,1:1 2|0:0,1:1 2|0:0,1:1 0|0:0,0:0 2|2:0,2:2 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 2|2:0,2:2 2|2:0,2:2 2|2:0,2:2 0|2:0,1:1 2|2:0,2:2 2|0:0,1:1 2|2:0,2:2 2|0:0,1:1 0|2:0,1:1 0|2:0,1:1 2|0:0,0.99:1 0|0:0,0:0 2|0:0,1:1 0|2:0,1:1 2|0:0,1.31:1 0|2:0,1.01:1 0|0:0,0:0 2|2:0,2:2 2|2:0,2:2 +21 16090570 STR_869805 AAACAAACAAACAAACAAACAAACA AAACAAACAAACAAACAAACA,AAACAAACAAACAAACAAACAAACAAACA,AAACAAACAAACAAACAAACAAACAAACAAACA,AAACAAACAAACAAACAAACAAACAAACAAACAAACA . PASS DR2=0,0,0.96,0.83;AF=0,0,0.4126,0.0138;END=16090594;IMP;START=16090570;PERIOD=4;DSLEN=5.25,9.25 GT:DS:TRDS 0|0:0,0,0,0:0.5 0|3:0,0,0.88,0:1 3|0:0,0,1.16,0:1 0|0:0,0,0,0:0.5 0|4:0,0,0,1:1.25 0|3:0,0,1,0:1 0|0:0,0,0,0:0.5 3|0:0,0,1.04,0:1 3|0:0,0,1,0:1 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|0:0,0,0.03,0:0.5 3|3:0,0,2,0:1.5 3|0:0,0,1,0:1 3|3:0,0,1.67,0:1.5 0|3:0,0,1,0:1 0|3:0,0,1,0:1 3|0:0,0,1,0:1 0|3:0,0,1,0:1 0|0:0,0,0,0:0.5 3|3:0,0,1.97,0:1.5 0|0:0,0,0,0:0.5 0|3:0,0,1.01,0:1 3|0:0,0,1,0:1 3|0:0,0,1,0:1 0|0:0,0,0,0:0.5 3|0:0,0,1,0:1 0|0:0,0,0,0:0.5 0|0:0,0,0,0:0.5 3|0:0,0,0.96,0:1 0|0:0,0,0,0:0.5 3|3:0,0,2,0:1.5 3|3:0,0,2,0:1.5 3|3:0,0,2,0:1.5 0|3:0,0,1,0:1 3|3:0,0,2,0:1.5 3|0:0,0,1,0:1 3|0:0,0,1,0:1 0|0:0,0,0,0:0.5 0|3:0,0,1.02,0:1 0|0:0,0,0,0:0.5 3|0:0,0,0.96,0:1 0|0:0,0,0,0:0.5 3|0:0,0,1,0:1 0|0:0,0,0,0:0.5 3|0:0,0,1.01,0.37:1 3|0:0,0,0.56,0:1 0|0:0,0,0,0:0.5 0|3:0,0,1,0:1 3|3:0,0,2,0:1.5 +21 16096717 STR_869808 TGTCTCAAAAAAAAAAAAAAAAAAAAAA TGTCTCAAAAAAAAAAAAAAAAAAAAA,TATCTAAAAAAAAAAAAAAAAAAAAAAA,TGTCAAAAAAAAAAAAAAAAAAAAAAAA,TGTCCAAAAAAAAAAAAAAAAAAAAAAA,TGTCTAAAAAAAAAAAAAAAAAAAAAAA,TTTCTAAAAAAAAAAAAAAAAAAAAAAA,TGTCTAAAAAAAAAAAAAAAAAAAAAAAA,TGTCTCAAAAAAAAAAAAAAAAAAAAAAA,TGTCTCAAAAAAAAAAAAAAAAAAAAAAAA,TGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA . PASS DR2=0,0,0,0,0.7,0,0,0.75,0,0;AF=0,0,0,0,0.1169,0,0,0.101,0,0;END=16096744;IMP;START=16096723;PERIOD=1;DSLEN=21.0,25.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.01,0,0,0.28,0,0:0.5 0|0:0,0,0,0,0,0,0,0.18,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|5:0,0,0,0,1,0,0,0,0,0:0.5 0|8:0,0,0,0,0,0,0,1.03,0,0:0.75 0|0:0,0,0,0,0,0,0,0.04,0,0:0.5 0|0:0,0,0,0,0.28,0,0,0.02,0,0:0.5 0|0:0,0,0,0,0.28,0,0,0.03,0,0:0.5 5|8:0,0,0,0,1,0,0,1,0,0:0.75 5|0:0,0,0,0,0.64,0,0,0,0,0:0.5 0|0:0,0,0,0,0.11,0,0,0.41,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0.01,0,0:0.5 8|5:0,0,0,0,0.97,0,0,0.99,0,0:0.75 0|0:0,0,0,0,0,0,0,0.01,0,0:0.5 8|0:0,0,0,0,0.02,0,0,1,0,0:0.75 0|0:0,0,0,0,0.01,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0.02,0,0:0.5 0|0:0,0,0,0,0.15,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.45,0,0,0.01,0,0:0.5 0|0:0,0,0,0,0.75,0,0,0.32,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|5:0,0,0,0,0.98,0,0,0.01,0,0:0.5 0|0:0,0,0,0,0,0,0,0.21,0,0:0.5 0|0:0,0,0,0,0.03,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0.01,0,0:0.5 0|5:0,0,0,0,0.54,0,0,0.18,0,0:0.5 0|0:0,0,0,0,0.29,0,0,0.05,0,0:0.5 0|0:0,0,0,0,0.44,0,0,0.02,0,0:0.5 0|5:0,0,0,0,0.94,0,0,0,0,0:0.5 0|5:0,0,0,0,0.75,0,0,0.02,0,0:0.5 0|8:0,0,0,0,0,0,0,0.54,0,0:0.75 8|0:0,0,0,0,0,0,0,1.01,0,0:0.75 0|5:0,0,0,0,0.96,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.15,0,0,0.22,0,0:0.5 0|0:0,0,0,0,0,0,0,0.01,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.01,0,0,0.29,0,0:0.5 0|8:0,0,0,0,0.07,0,0,1.09,0,0:0.75 0|0:0,0,0,0,0.01,0,0,0.15,0,0:0.5 8|5:0,0,0,0,0.83,0,0,0.96,0,0:0.75 0|0:0,0,0,0,0.05,0,0,0,0,0:0.5 +21 16103845 STR_869810 TTTTCTTTTTTTTTTTTTTTTTTTGAGA TTTTCTTTTTTTTTTTTTTTTGAGA,TTTTCTTTTTTTTTTTTTTTTTGAGA,TTTTCTTTTTTTTTTTTTTTTTTAGA,TTTTCTTTTCTTTTTTTTTTTTTGAGA,TTTTCTTTTTTTTTTTTTTTTTTGAGA,TTTTCTTTTTTTTTTTTTTTTTTTAGA,TTTTCTTTTTTTTTTTTTTTTTTTAGG,TTTTCTTTTTTTTTTTTTTTTTTTATA,TTTTCTTTTTTTTTTTTTTTTTTTGGA,TTTTCTTTTTTTTTTTTTTTTTTTTGA,TTTTCTTTTTTTTTTTTTTTTTTTTAGA,TTTTCTTTTTTTTTTTTTTTTTTTTTGA,TTTTCTTTTTTTTTTTTTTTTTTTTGAGA . PASS DR2=0,0.94,0,0,0.83,0.69,0,0,0,0.3,0,0,0;AF=0,0.2622,0,0,0.5352,0.1027,0,0,0,0.0129,0,0,0;END=16103868;IMP;START=16103845;PERIOD=1;DSLEN=21.0,25.0 GT:DS:TRDS 0|0:0,0,0,0,0.24,0,0,0,0,0,0,0,0:1.5 2|2:0,1.59,0,0,0.39,0.01,0,0,0,0,0,0,0:0.5 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.5 0|5:0,0,0,0,1.06,0,0,0,0,0,0,0,0:1.25 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0:1.25 6|5:0,0,0,0,1.26,0.69,0,0,0,0.06,0,0,0:1 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 5|6:0,0,0,0,1.38,0.62,0,0,0,0,0,0,0:1 2|5:0,1,0,0,0.98,0.02,0,0,0,0,0,0,0:0.75 6|5:0,0,0,0,0.5,1.44,0,0,0,0.06,0,0,0:1 5|2:0,1,0,0,0.94,0.06,0,0,0,0,0,0,0:0.75 5|5:0,0,0,0,1.98,0.02,0,0,0,0,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0:1 5|5:0,0,0,0,1.98,0.02,0,0,0,0,0,0,0:1 10|5:0,0,0,0,1.29,0.21,0,0,0,0.49,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1.5 5|2:0,0.71,0,0,1.19,0.09,0,0,0,0,0,0,0:0.75 2|5:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 2|6:0,1,0,0,0.23,0.77,0,0,0,0,0,0,0:0.75 0|5:0,0,0,0,1,0,0,0,0,0,0,0,0:1.25 2|5:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 2|5:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 5|5:0,0,0,0,1.62,0.28,0,0,0,0.11,0,0,0:1 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.5 5|2:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 5|5:0,0.2,0,0,1.73,0.07,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0,0,0,0,0,0,0,0:1.25 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0:1 2|2:0,2,0,0,0,0,0,0,0,0,0,0,0:0.5 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0:1 5|5:0,0,0,0,1.83,0.17,0,0,0,0,0,0,0:1 5|6:0,0,0,0,1.12,0.88,0,0,0,0,0,0,0:1 5|5:0,0,0,0,1.95,0.04,0,0,0,0.01,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0:1 5|5:0,0,0,0,1.82,0.15,0,0,0,0.03,0,0,0:1 5|5:0,0.1,0,0,1.82,0.04,0,0,0,0.03,0,0,0:1 5|2:0,1,0,0,0.87,0.03,0,0,0,0.09,0,0,0:0.75 2|6:0,1,0,0,0.06,0.94,0,0,0,0,0,0,0:0.75 5|2:0,1,0,0,0.97,0.03,0,0,0,0,0,0,0:0.75 5|6:0,0.13,0,0,0.84,1.02,0,0,0,0.01,0,0,0:1 2|5:0,1,0,0,1,0,0,0,0,0,0,0,0:0.75 5|6:0,0,0,0,1,1,0,0,0,0,0,0,0:1 6|2:0,1,0,0,0.06,0.94,0,0,0,0,0,0,0:0.75 5|5:0,0.25,0,0,1.44,0.32,0,0,0,0,0,0,0:1 5|5:0,0.12,0,0,1.18,0.33,0,0,0,0.36,0,0,0:1 2|5:0,1,0,0,0.97,0.03,0,0,0,0,0,0,0:0.75 5|5:0,0.11,0,0,1.83,0.03,0,0,0,0.03,0,0,0:1 5|5:0,0,0,0,2,0,0,0,0,0,0,0,0:1 +21 16104681 STR_869811 TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGGAGC TTTTTTTTTCTTTTCTTTTTTTGGAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGTGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGT,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGGGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGTGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGGGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGTGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGTGT,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTAGC,TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTGGAGC,TTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGGAGC . PASS DR2=0,0.98,0,0.94,0,0,0.84,0.61,0,0,0.74,0.96,0,0,0,0,0,0,0,0;AF=0,0.0102,0,0.231,0,0,0.5465,0.077,0,0,0.0171,0.0312,0,0,0,0,0,0,0,0;END=16104713;IMP;START=16104681;PERIOD=1;DSLEN=22.0,34.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0.2,0.02,0,0,0.02,0,0,0,0,0,0,0,0,0:1.83333 4|4:0,0,0,1.58,0,0,0.38,0.03,0,0,0,0.01,0,0,0,0,0,0,0,0:1.66667 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 0|8:0,0,0,0,0,0,0.06,1,0,0,0,0,0,0,0,0,0,0,0,0:1.75 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.75 7|7:0,0,0,0,0,0,1.98,0.02,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.84,0.16,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.93,0.07,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|11:0,0,0,0,0,0,1.29,0.19,0,0,0.52,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.98,0.01,0,0,0.01,0,0,0,0,0,0,0,0,0:1.66667 8|7:0,0,0,0,0,0,1.5,0.5,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.83333 11|4:0,0,0,0.71,0,0,0.19,0.1,0,0,1,0,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,0.82,0.18,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.75 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.47,0.53,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 8|12:0,0,0,0,0,0,0.16,0.81,0,0,0.03,1,0,0,0,0,0,0,0,0:1.75 7|7:0,0,0,0.2,0,0,1.8,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.75 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.75 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.99,0.01,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.81,0.19,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.83,0.17,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.56,0.44,0,0,0.01,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|8:0,0,0,0,0,0,1.32,0.68,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0.02,0,0.1,0,0,1.83,0.05,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|4:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,0.99,0.01,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|12:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0:1.75 7|2:0,1,0,0.13,0,0,0.6,0.15,0,0,0.12,0,0,0,0,0,0,0,0,0:1.58333 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|8:0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 8|12:0,0,0,0,0,0,0.06,0.94,0,0,0,1,0,0,0,0,0,0,0,0:1.75 7|7:0,0,0,0.25,0,0,1.74,0.01,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0.01,0,0,1.5,0.38,0,0,0,0.11,0,0,0,0,0,0,0,0:1.66667 4|7:0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0.11,0,0,1.84,0.05,0,0,0,0,0,0,0,0,0,0,0,0:1.66667 7|7:0,0,0,0,0,0,1.98,0.01,0,0,0.01,0,0,0,0,0,0,0,0,0:1.66667 +21 16106690 STR_869813 TTTTTTTTTTTTTT TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT . PASS DR2=0,0.99,0;AF=0,0.9295,0;END=16106703;IMP;START=16106690;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 2|2:0,1.96,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 0|2:0,1.01,0:1 0|2:0,1,0:1 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 0|0:0,0,0:1.33333 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 0|2:0,1,0:1 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,1.99,0:0.666667 2|0:0,1,0:1 0|2:0,1,0:1 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 2|2:0,2,0:0.666667 +21 16113113 STR_869816 TTTTTTTTTTT TTTTTTTTT,TATTTTTTTT,TTTTTTTTTT . PASS DR2=0.99,0,0.99;AF=0.0101,0,0.9299;END=16113123;IMP;START=16113113;PERIOD=1;DSLEN=9.0,11.0 GT:DS:TRDS 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 0|3:0,0,1.01:1.5 0|3:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 0|0:0,0,0:2 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 0|3:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,1.99:1 3|3:0,0,1.99:1 3|0:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0.01,0,1.99:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|1:1,0,1:0.5 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 +21 16116734 STR_869817 AAAACAAAACAAAACAAAACAAAACAAAACAAAAAAT AAAACAAAACAAAACAAAACAAAACAAAAAAC,AAAACAAAACAAAACAAAACAAAACGAAAAAC,AAAACAAAACAAAACAAAACAAAACAAAACAAAAAAC,AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAT . PASS DR2=0.96,0,0,0;AF=0.7181,0,0,0;END=16116767;IMP;START=16116734;PERIOD=5;DSLEN=5.8,7.8 GT:DS:TRDS 1|1:2,0,0,0:0 0|1:0.65,0,0,0:0.5 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|1:1.19,0,0,0:0.5 0|1:1,0,0,0:0.5 1|1:2,0,0,0:0 1|0:1,0,0,0:0.5 1|1:2,0,0,0:0 0|1:1,0,0,0:0.5 1|1:2,0,0,0:0 1|0:1.24,0,0,0:0.5 1|1:2,0,0,0:0 1|1:2,0,0,0:0 1|1:2,0,0,0:0 1|1:2,0,0,0:0 0|0:0,0,0,0:1 1|1:2,0,0,0:0 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 0|1:1,0,0,0:0.5 1|1:2,0,0,0:0 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 1|1:1.96,0,0,0:0 1|1:1.97,0,0,0:0 1|0:1,0,0,0:0.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 1|1:2,0,0,0:0 1|1:2,0,0,0:0 1|1:2,0,0,0:0 1|1:1.97,0,0,0:0 1|1:2,0,0,0:0 1|1:2,0,0,0:0 1|1:1.99,0,0,0:0 1|0:1,0,0,0:0.5 0|1:1.04,0,0,0:0.5 1|1:2,0,0,0:0 1|1:1.85,0,0,0:0 0|1:1,0,0,0:0.5 1|1:2,0,0,0:0 1|1:1.99,0,0,0:0 1|1:2,0,0,0:0 1|1:1.99,0,0,0:0 0|1:1.01,0,0,0:0.5 1|1:2,0,0,0:0 1|1:1.96,0,0,0:0 +21 16129848 STR_869821 ACACGCACACACACACACACACACA ACACGCACACACACACACACACACACA,ACATGCACACACACACACACACACACACACA,ACACGCACACACACACACACACACACACACACA,ACACGCACACACACGCACACACACACACACACA,ACATGCACACACACACACACACACACACACACA,ACACGCACACACACACACACACACACACACACACA,ACATGCACACACACACACACACACACACACACACA,ACACGCACACACACACACACACACACACACACACACA . PASS DR2=0.29,0,0.99,0,0.97,0,0.09,0;AF=0.005,0,0.0101,0,0.3132,0,0.0027,0;END=16129872;IMP;START=16129848;PERIOD=2;DSLEN=12.5,18.5 GT:DS:TRDS 5|5:0,0,0,0,2,0,0,0:1.33333 0|0:0.08,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 5|0:0,0,0,0,1,0,0,0:0.666667 5|0:0,0,0,0,0.98,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0:0.666667 5|0:0,0,0,0,0.94,0,0.06,0:0.666667 5|5:0,0,0,0,1.98,0,0.02,0:1.33333 0|5:0,0,0,0,0.98,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0:0.666667 0|5:0,0,0,0,0.98,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 5|5:0,0,0,0,1.81,0,0.14,0:1.33333 0|5:0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0.01,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 5|0:0,0,0,0,0.98,0,0.02,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 5|0:0.01,0,0.01,0,1,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|5:0.37,0,0,0,1,0,0,0:0.666667 5|5:0,0,0,0,1.95,0,0.02,0:1.33333 0|0:0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 0|5:0,0,0,0,1,0,0,0:0.666667 0|3:0,0,1,0,0,0,0,0:0.666667 5|5:0.01,0,0,0,1.64,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 5|0:0,0,0,0,1.08,0,0.01,0:0.666667 0|0:0,0,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:0 0|0:0.02,0,0,0,0,0,0,0:0 0|5:0,0,0,0,1,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0:0.666667 +21 16132900 STR_869824 AAATAAATAAATAAAAAAAT AAATAAATAAAAAAAAAAT,AAATAAATAAAAAAAAAAAT . PASS DR2=0.95,0;AF=0.3124,0;END=16132919;IMP;START=16132900;PERIOD=4;DSLEN=4.75,5.0 GT:DS:TRDS 1|1:1.99,0:0 0|0:0.01,0:2 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 0|1:1,0:1 0|0:0,0:2 1|0:1.01,0:1 0|0:0.4,0:2 0|1:1,0:1 1|0:1,0:1 1|0:0.98,0:1 1|1:2,0:0 0|1:0.95,0:1 0|1:0.98,0:1 0|0:0.4,0:2 0|0:0,0:2 1|1:1.94,0:0 0|1:1,0:1 0|0:0.01,0:2 0|1:1,0:1 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 1|0:1,0:1 0|0:0,0:2 1|0:0.98,0:1 1|0:1,0:1 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 0|1:0.99,0:1 1|1:1.92,0:0 0|0:0,0:2 0|1:1,0:1 0|0:0,0:2 0|0:0,0:2 0|1:0.98,0:1 0|1:1,0:1 0|1:1,0:1 1|1:1.68,0:0 0|0:0,0:2 0|1:1,0:1 1|0:1,0:1 0|0:0,0:2 0|0:0,0:2 0|0:0,0:2 0|1:1,0:1 1|0:1,0:1 +21 16137897 STR_869826 ACACACACACACACACACACACACACACACACACA ACACACACACACACACACACACA,ACACACACACACACACACACACACA,ACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACA,ACACACACACACACACACTCACACACACACA,ACACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACACACACACACACA . PASS DR2=0,0,0,0.7,0.8,0,0.81,0.68,0,0,0;AF=0,0,0,0.0892,0.4838,0,0.2858,0.0159,0,0,0;END=16137931;IMP;START=16137897;PERIOD=2;DSLEN=11.5,22.5 GT:DS:TRDS 4|5:0,0,0,0.62,1.27,0,0.07,0,0,0,0:0.636364 7|5:0,0,0,0.01,0.75,0,1.16,0,0,0,0:0.818182 5|0:0,0,0,0,1,0,0,0,0,0,0:0.909091 7|5:0,0,0,0.02,1,0,0.98,0,0,0,0:0.818182 7|0:0,0,0,0.45,0,0,0.55,0,0,0,0:1 5|5:0,0,0,0,1.98,0,0,0,0,0,0:0.727273 7|7:0,0,0,0.01,0,0,1.97,0,0,0,0:0.909091 5|5:0,0,0,0.02,1.72,0,0,0,0,0,0:0.727273 5|7:0,0,0,0.01,0.99,0,0.99,0,0,0,0:0.818182 7|5:0,0,0,0.04,1.22,0,0.73,0,0,0,0:0.818182 5|7:0,0,0,0,1,0,1,0,0,0,0:0.818182 5|4:0,0,0,0.9,1.06,0,0,0,0,0,0:0.636364 5|5:0,0,0,0.01,1.9,0,0.03,0.01,0,0,0:0.727273 7|7:0,0,0,0.01,0,0,1.98,0,0,0,0:0.909091 5|5:0,0,0,0.02,1.57,0,0.38,0,0,0,0:0.727273 7|7:0,0,0,0,0.01,0,1.65,0,0,0,0:0.909091 7|4:0,0,0,1.02,0.04,0,0.88,0,0,0,0:0.727273 5|7:0,0,0,0.22,1.19,0,0.29,0,0,0,0:0.818182 7|4:0,0,0,1,0,0,0.99,0,0,0,0:0.727273 5|0:0,0,0,0.24,0.65,0,0.27,0.03,0,0,0:0.909091 0|5:0,0,0,0.07,0.8,0,0,0,0,0,0:0.909091 5|7:0,0,0,0,0.99,0,1,0,0,0,0:0.818182 0|5:0,0,0,0.01,1,0,0,0.28,0,0,0:0.909091 5|0:0,0,0,0,1.45,0,0.05,0,0,0,0:0.909091 5|5:0,0,0,0,1.87,0,0.02,0.11,0,0,0:0.727273 8|0:0,0,0,0,0,0,0,0.99,0,0,0:1.18182 7|0:0,0,0,0.01,0.03,0,0.75,0.03,0,0,0:1 5|5:0,0,0,0.33,1.62,0,0.04,0.01,0,0,0:0.727273 5|5:0,0,0,0,1.82,0,0.02,0.04,0,0,0:0.727273 4|5:0,0,0,1,0.96,0,0.03,0,0,0,0:0.636364 7|0:0,0,0,0,0,0,1.02,0,0,0,0:1 7|5:0,0,0,0,1.03,0,0.97,0,0,0,0:0.818182 5|5:0,0,0,0,1.85,0,0.15,0,0,0,0:0.727273 7|5:0,0,0,0.02,0.91,0,1.07,0,0,0,0:0.818182 4|5:0,0,0,0.57,1.32,0,0.07,0,0,0,0:0.636364 5|5:0,0,0,0,1.99,0,0.01,0,0,0,0:0.727273 0|5:0,0,0,0.02,0.97,0,0.25,0,0,0,0:0.909091 5|7:0,0,0,0.02,0.98,0,0.95,0,0,0,0:0.818182 7|5:0,0,0,0.25,0.74,0,1.01,0,0,0,0:0.818182 7|5:0,0,0,0.14,0.72,0,1,0.06,0,0,0:0.818182 7|5:0,0,0,0.01,1.01,0,0.98,0,0,0,0:0.818182 5|5:0,0,0,0.02,1.6,0,0.04,0.01,0,0,0:0.727273 7|5:0,0,0,0,1,0,1,0,0,0,0:0.818182 5|5:0,0,0,0,2,0,0,0,0,0,0:0.727273 0|4:0,0,0,0.98,0.02,0,0,0,0,0,0:0.818182 0|7:0,0,0,0.02,0.48,0,0.97,0,0,0,0:1 5|7:0,0,0,0,0.62,0,1.38,0,0,0,0:0.818182 4|7:0,0,0,0.86,0.24,0,0.87,0,0,0,0:0.727273 7|5:0,0,0,0,1,0,0.99,0,0,0,0:0.818182 5|5:0,0,0,0,1.99,0,0,0.01,0,0,0:0.727273 +21 16140765 STR_869827 ACACACACACACACACACACACACAA ACACACACACACACACAC,ACACACACACACACACACAA,ACACACACACACACACACAC,ACACACACACACACACACACACAA,ACACACACACACACACACACACAC,ACACACACACACACACACACACACACAA,ACACACACACACACACACGCACACACAA,ACACACACACACACACACACACACACACAA,ACACACACACACACACACACACACACACACAA,ACACACACACACACACACACACACATACACAA,ACACACACACACACACACACACACACACACACAA,ACACACACACACACACACACACACACACACACACAA . PASS DR2=0.46,0,0,0,0,0.63,0,0.67,0.63,0,0.45,0;AF=0.0631,0,0,0,0,0.1219,0,0.191,0.474,0,0.0476,0;END=16140789;IMP;START=16140765;PERIOD=2;DSLEN=8.5,17.5 GT:DS:TRDS 8|1:0.61,0,0,0,0,0,0,0.77,0.51,0,0.1,0:0.666667 9|9:0.15,0,0,0,0,0,0,0.04,1.76,0,0.01,0:1.55556 8|9:0,0,0,0,0,0,0,0.68,1.32,0,0,0:1.44444 0|9:0.01,0,0,0,0,0.12,0,0.01,0.89,0,0,0:1.22222 8|8:0.01,0,0,0,0,0,0,1.96,0,0,0.03,0:1.33333 8|9:0.07,0,0,0,0,0.03,0,0.7,1.06,0,0.03,0:1.44444 0|9:0,0,0,0,0,0,0,0.01,1.02,0,0,0:1.22222 0|8:0.26,0,0,0,0,0.31,0,0.49,0.6,0,0.01,0:1.11111 9|6:0.07,0,0,0,0,0.63,0,0.45,0.8,0,0.03,0:1.33333 9|0:0,0,0,0,0,0.4,0,0.05,1.01,0,0.01,0:1.22222 1|9:0.86,0,0,0,0,0,0,0,1.14,0,0,0:0.777778 9|9:0.02,0,0,0,0,0.48,0,0.07,1.38,0,0,0:1.55556 6|6:0.28,0,0,0,0,1.7,0,0,0.02,0,0,0:1.11111 8|9:0,0,0,0,0,0,0,1.01,0.99,0,0,0:1.44444 6|9:0.04,0,0,0,0,0.74,0,0,0.84,0,0.35,0:1.33333 9|0:0.05,0,0,0,0,0.13,0,0.37,0.99,0,0.1,0:1.22222 9|8:0.2,0,0,0,0,0,0,0.47,0.99,0,0.3,0:1.44444 9|11:0.37,0,0,0,0,0,0,0.36,0.63,0,0.65,0:1.66667 9|0:0,0,0,0,0,0,0,0,1,0,0,0:1.22222 8|0:0.15,0,0,0,0,0.33,0,0.39,0.56,0,0.06,0:1.11111 6|6:0,0,0,0,0,1.5,0,0.03,0.36,0,0.05,0:1.11111 9|9:0.01,0,0,0,0,0,0,0.08,1.89,0,0.01,0:1.55556 9|1:0.4,0,0,0,0,0.24,0,0.32,1.01,0,0,0:0.777778 9|9:0.01,0,0,0,0,0,0,0.12,1.78,0,0.09,0:1.55556 9|9:0,0,0,0,0,0,0,0,2,0,0,0:1.55556 6|9:0,0,0,0,0,1,0,0,1,0,0,0:1.33333 0|9:0,0,0,0,0,0.01,0,0.44,0.8,0,0.22,0:1.22222 6|11:0,0,0,0,0,0.79,0,0.02,0.54,0,0.65,0:1.44444 6|9:0,0,0,0,0,0.66,0,0,1,0,0,0:1.33333 8|9:0.02,0,0,0,0,0.32,0,0.73,0.91,0,0.02,0:1.44444 0|8:0,0,0,0,0,0.01,0,1.29,0.02,0,0.01,0:1.11111 8|8:0,0,0,0,0,0,0,2,0,0,0,0:1.33333 0|9:0.15,0,0,0,0,0.01,0,0.27,0.62,0,0.22,0:1.22222 0|9:0.3,0,0,0,0,0,0,0.02,1.03,0,0.28,0:1.22222 9|9:0.02,0,0,0,0,0.37,0,0.22,1.07,0,0.31,0:1.55556 9|9:0.09,0,0,0,0,0.01,0,0.01,1.87,0,0.02,0:1.55556 9|9:0,0,0,0,0,0.19,0,0.03,1.76,0,0,0:1.55556 8|9:0,0,0,0,0,0,0,0.97,0.99,0,0.04,0:1.44444 1|9:0.68,0,0,0,0,0,0,0.29,1.03,0,0,0:0.777778 9|6:0.01,0,0,0,0,0.96,0,0,0.87,0,0,0:1.33333 9|9:0.02,0,0,0,0,0,0,0.01,1.76,0,0,0:1.55556 9|1:1.2,0,0,0,0,0.04,0,0.04,0.68,0,0.02,0:0.777778 0|11:0,0,0,0,0,0,0,0,0,0,1,0:1.33333 8|9:0,0,0,0,0,0,0,1,1,0,0,0:1.44444 9|9:0.17,0,0,0,0,0.01,0,0,1.46,0,0.06,0:1.55556 8|0:0,0,0,0,0,0,0,0.94,0.22,0,0,0:1.11111 8|8:0,0,0,0,0,0,0,1.51,0.47,0,0.01,0:1.33333 9|8:0,0,0,0,0,0.01,0,0.93,1.06,0,0,0:1.44444 9|9:0,0,0,0,0,0.29,0,0,1.71,0,0,0:1.55556 6|9:0.07,0,0,0,0,0.88,0,0,0.99,0,0.05,0:1.33333 +21 16140810 STR_869828 CGTGCACACACACACACACACT CATGCACACACACACACACACT,CGTGCACACACACACACACACA,CGTGCACACACACACACACACACA,CGTGCACACACACACACACACACT,CGTGCACACACACACACACACACACA . PASS DR2=0,0,0.75,0.01,0;AF=0,0,0.1737,0.0001,0;END=16140830;IMP;START=16140814;PERIOD=2;DSLEN=8.5,10.5 GT:DS:TRDS 0|0:0,0,0.04,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.03,0,0:0 0|0:0,0,0,0,0:0 3|3:0,0,1.99,0,0:1 0|0:0,0,0.3,0,0:0 0|0:0,0,0.01,0,0:0 0|3:0,0,0.71,0,0:0.5 0|0:0,0,0.54,0,0:0 0|3:0,0,0.76,0,0:0.5 0|0:0,0,0,0,0:0 0|0:0,0,0.05,0,0:0 0|0:0,0,0,0,0:0 3|0:0,0,1,0,0:0.5 0|0:0,0,0,0,0:0 3|0:0,0,0.8,0,0:0.5 0|0:0,0,0,0,0:0 0|3:0,0,1,0,0:0.5 0|0:0,0,0,0,0:0 3|0:0,0,0.7,0,0:0.5 0|0:0,0,0.01,0,0:0 0|0:0,0,0.08,0,0:0 0|0:0,0,0.32,0,0:0 0|0:0,0,0.17,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.47,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.02,0,0:0 3|3:0,0,1.69,0,0:1 3|3:0,0,2,0,0:1 0|0:0,0,0.26,0,0:0 0|0:0,0,0.11,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.01,0,0:0 0|0:0,0,0.27,0.01,0:0 0|0:0,0,0.03,0.01,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.01,0,0:0 0|0:0,0,0.02,0,0:0 0|0:0,0,0,0,0:0 3|0:0,0,1,0,0:0.5 0|0:0,0,0,0,0:0 3|0:0,0,0.96,0,0:0.5 3|3:0,0,1.76,0,0:1 0|0:0,0,0.04,0,0:0 0|0:0,0,0,0,0:0 0|0:0,0,0.21,0,0:0 +21 16150024 STR_869829 AATTAAAAAAAAAAAAAAAA AATTAAAAAAAAAAAAA,AATTAAAAAAAAAAAAAAA,AGTTAAAAAAAAAAAAAAAA,AATTAAAAAAAAAAAAAAAAA,AATTAAAAAAAAAAAAAAAAAA . PASS DR2=0.97,0.14,0,0.14,0;AF=0.2347,0.0022,0,0.0069,0;END=16150043;IMP;START=16150028;PERIOD=1;DSLEN=13.0,18.0 GT:DS:TRDS 0|1:0.93,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|1:0.76,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0,0:0.6 1|0:0.79,0,0,0.26,0:0.6 1|0:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0.12,0:1.2 1|1:2,0,0,0,0:0 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0.07,0:0.6 0|1:1,0,0,0,0:0.6 0|0:0,0,0,0.01,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 1|1:2,0,0,0,0:0 0|0:0,0,0,0,0:1.2 0|0:0.02,0.01,0,0.01,0:1.2 0|1:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0,0:0.6 1|0:1,0,0,0.02,0:0.6 0|0:0,0.17,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 1|0:1,0,0,0,0:0.6 0|0:0,0,0,0.12,0:1.2 0|1:1,0.04,0,0,0:0.6 0|0:0,0,0,0,0:1.2 0|1:1,0,0,0.01,0:0.6 0|1:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 0|1:1,0,0,0,0:0.6 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0.06,0:1.2 0|0:0,0,0,0,0:1.2 0|0:0,0,0,0,0:1.2 0|1:1,0,0,0,0:0.6 0|1:1,0,0,0,0:0.6 1|0:0.97,0,0,0,0:0.6 +21 16157769 STR_869834 AAAAAAAAAAAA AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA . PASS DR2=0,0.89,0.84,0;AF=0,0.5335,0.1276,0;END=16157780;IMP;START=16157769;PERIOD=1;DSLEN=11.0,15.0 GT:DS:TRDS 0|0:0,0.14,0.02,0:0.5 2|2:0,2,0,0:1 3|2:0,1.02,0.98,0:1.25 0|0:0,0.01,0,0:0.5 3|2:0,0.93,1.07,0:1.25 0|2:0,0.77,0.23,0:0.75 2|2:0,1.99,0,0:1 0|3:0,0.01,0.99,0:1 0|2:0,0.99,0,0:0.75 0|3:0,0,1,0:1 2|2:0,2,0,0:1 0|0:0,0.01,0,0:0.5 0|0:0,0,0,0:0.5 3|2:0,1,1,0:1.25 0|2:0,1,0,0:0.75 3|0:0,0.33,0.67,0:1 2|2:0,1.99,0.01,0:1 2|2:0,2,0,0:1 2|0:0,1,0,0:0.75 2|2:0,1.63,0.36,0:1 0|0:0,0,0,0:0.5 2|3:0,1.03,0.97,0:1.25 2|2:0,1.62,0.02,0:1 2|0:0,1,0,0:0.75 2|2:0,2,0,0:1 0|2:0,1,0,0:0.75 2|2:0,1.58,0.42,0:1 0|2:0,1,0,0:0.75 0|2:0,1,0,0:0.75 0|2:0,1,0,0:0.75 3|2:0,1.45,0.55,0:1.25 3|2:0,1,1,0:1.25 2|2:0,2,0,0:1 2|2:0,2,0,0:1 0|3:0,0,1,0:1 2|2:0,2,0,0:1 2|0:0,1,0,0:0.75 3|2:0,0.53,1.47,0:1.25 0|0:0,0,0,0:0.5 2|0:0,1,0,0:0.75 0|2:0,1,0,0:0.75 2|0:0,0.91,0,0:0.75 0|2:0,1,0,0:0.75 2|2:0,2,0,0:1 2|2:0,1.99,0,0:1 2|0:0,1,0,0:0.75 2|2:0,1.88,0.12,0:1 3|0:0,0.11,0.89,0:1 2|0:0,1,0,0:0.75 0|2:0,1.42,0.01,0:0.75 +21 16161663 STR_869837 TCAAAAAAAAAAAAAAA TCAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAA . PASS DR2=0.15,0.61,0,0.97;AF=0.0065,0.012,0,0.0675;END=16161679;IMP;START=16161665;PERIOD=1;DSLEN=14.0,16.0 GT:DS:TRDS 0|4:0,0.01,0,0.75:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 4|0:0.02,0,0,1:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.11,0,0,0:1 0|4:0,0,0,1:1.5 0|0:0.3,0,0,0:1 0|0:0,0,0,0:1 0|2:0.01,0.74,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.02,0.02,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0.01,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|4:0,0,0,1:1.5 0|0:0.03,0,0,0:1 0|0:0,0.44,0,0:1 0|4:0,0,0,1:1.5 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|0:0,0,0,0:1 0|4:0,0,0,1:1.5 0|4:0.01,0,0,1:1.5 0|0:0.11,0,0,0:1 +21 16162294 STR_869838 TATATATATATATATATATATAAAAAATATATATA TATATATATATATATATAAAATATATATA,TATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATATATAATATATATA,TATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATATAAAAAAAATATATATA,TATATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATATATAAAAAAAATATATATA,TATATATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATAAAAATATATATA,TATATATATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATAAAAAATATATATA,TATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATGTATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATATATATA,TATATACATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATACATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATA,TATATACATATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATA . PASS DR2=0,0,0,0,0,0.07,0,0.38,0,0.81,0.8,0,0.82,0.93,0,0.98,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0.99,0,0,0,0.8,0,0.94,0,0.01,0,0.99;AF=0,0,0,0,0,0.0022,0,0.0276,0,0.1023,0.2368,0,0.2017,0.0186,0,0.0803,0,0,0,0.0002,0,0,0,0,0,0,0,0,0,0,0.0101,0,0,0,0.0206,0,0.0368,0,0.0003,0,0.1609;END=16162328;IMP;START=16162294;PERIOD=2;DSLEN=14.5,35.0 GT:DS:TRDS 0|35:0,0,0,0,0,0,0,0.01,0,0.04,0.08,0,0.07,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75,0,0,0,0,0,0:0.97561 16|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 13|16:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.731707 0|41:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.14634 13|11:0,0,0,0,0,0,0,0,0,0,0.91,0,1.09,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.634146 41|13:0,0,0,0,0,0,0,0.01,0,0.33,0.01,0,0.63,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.34146 10|8:0,0,0,0,0,0.01,0,0.56,0,0.83,0.43,0,0.17,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.536585 41|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.34146 37|11:0,0,0,0,0,0.01,0,0,0,0,0.98,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0.99,0,0,0,0:1.17073 41|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.34146 11|11:0,0,0,0,0,0,0,0.03,0,0,1.97,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.292683 41|41:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,1.99:2 13|10:0,0,0,0,0,0,0,0,0,0.99,0,0,1.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.634146 41|11:0,0,0,0,0,0,0,0.11,0,0.14,0.67,0,0.08,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.29268 13|35:0,0,0,0,0,0,0,0,0,0,0.32,0,0.68,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.17073 11|11:0,0,0,0,0,0,0,0.1,0,0,1.9,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 10|11:0,0,0,0,0,0,0,0.01,0,0.94,0.99,0,0.06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 8|0:0,0,0,0,0,0,0,0.59,0,0,0.41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.390244 11|11:0,0,0,0,0,0,0,0.03,0,0.07,1.47,0,0.43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 41|41:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2:2 10|13:0,0,0,0,0,0,0,0,0,0.97,0,0,1.03,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.634146 11|13:0,0,0,0,0,0.03,0,0.03,0,0.28,1.08,0,0.38,0,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.03:0.634146 11|41:0,0,0,0,0,0,0,0.4,0,0,0.59,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.29268 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.780488 41|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.29268 11|11:0,0,0,0,0,0,0,0.01,0,0.02,1.55,0,0.42,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 41|16:0,0,0,0,0,0,0,0,0,0,0,0,0.03,0,0,0.97,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.39024 41|10:0,0,0,0,0,0,0,0,0,0.96,0,0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0.99:1.29268 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.536585 13|13:0,0,0,0,0,0,0,0,0,0,0.69,0,1.31,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 11|10:0,0,0,0,0,0,0,0,0,0.74,1,0,0.26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 11|11:0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 41|13:0,0,0,0,0,0,0,0,0,0,0.01,0,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.34146 10|11:0,0,0,0,0,0,0,0.32,0,0.79,0.68,0,0.21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.585366 16|41:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.39024 13|13:0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 0|37:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31,0,0.69,0,0,0,0:1.02439 11|41:0,0,0,0,0,0,0,0.34,0,0,0.66,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1:1.29268 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.439024 11|37:0,0,0,0,0,0.09,0,0.12,0,0.05,0.74,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0:1.17073 0|13:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.487805 13|10:0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.634146 16|10:0,0,0,0,0,0,0,0,0,0.85,0,0,0.15,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 13|0:0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.487805 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0.14,1.86,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.682927 13|37:0,0,0,0,0,0,0,0,0,0.06,0,0,0.94,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0:1.21951 11|31:0,0,0,0,0,0,0,0,0,0.01,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:1.02439 11|11:0,0,0,0,0,0.09,0,0.1,0,0.16,1.53,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.08:0.585366 +21 16163138 STR_869840 ATTTTTTTTCTTTTTTTTTTT ATTTTTTTTCTTTTTTTTT,AATTTTTTTCTTTTTTTTTT,ATTTTTTTTCTTTTTTTTTT . PASS DR2=0,0,0.98;AF=0,0,0.6708;END=16163158;IMP;START=16163139;PERIOD=1;DSLEN=18.0,20.0 GT:DS:TRDS 0|0:0,0,0.27:2 3|3:0,0,2:1 3|3:0,0,2:1 0|0:0,0,0:2 3|3:0,0,2:1 0|3:0,0,1:1.5 3|3:0,0,2:1 0|3:0,0,1:1.5 0|3:0,0,1:1.5 0|3:0,0,1:1.5 3|3:0,0,2:1 0|0:0,0,0:2 0|0:0,0,0:2 3|3:0,0,2:1 0|3:0,0,1:1.5 3|0:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|0:0,0,1:1.5 3|3:0,0,2:1 0|0:0,0,0:2 3|3:0,0,2:1 3|3:0,0,1.82:1 3|0:0,0,1:1.5 3|3:0,0,2:1 0|3:0,0,1:1.5 3|3:0,0,2:1 0|3:0,0,1:1.5 0|3:0,0,1:1.5 0|3:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 3|3:0,0,2:1 0|3:0,0,1:1.5 3|3:0,0,2:1 3|0:0,0,1:1.5 3|3:0,0,2:1 0|0:0,0,0:2 3|0:0,0,1:1.5 0|3:0,0,1:1.5 3|0:0,0,1:1.5 0|3:0,0,1:1.5 3|3:0,0,2:1 3|3:0,0,2:1 3|0:0,0,1:1.5 3|3:0,0,2:1 3|0:0,0,1:1.5 3|0:0,0,1:1.5 3|3:0,0,2:1 +21 16167484 STR_869842 AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA AAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAA,ATATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA,AAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA . PASS DR2=0,0,0,0,0.82,0.71,0.81,0.8,0,0.76,0,0,0,0.74,0.7,0;AF=0,0,0,0,0.0148,0.0268,0.0936,0.1996,0,0.2589,0,0,0,0.1637,0.0451,0;END=16167534;IMP;START=16167485;PERIOD=3;DSLEN=7.666666666666667,19.666666666666668 GT:DS:TRDS 10|10:0,0,0,0,0,0.01,0.02,0.07,0,1.78,0,0,0,0.03,0.03,0:1.33333 0|10:0,0,0,0,0,0,0,0,0,0.85,0,0,0,0.08,0,0:1.41667 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.41667 14|8:0,0,0,0,0,0.04,0,0.96,0,0,0,0,0,1,0,0:1.41667 14|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0.82,0.22,0:1.58333 8|10:0,0,0,0,0,0,0.01,1.02,0,0.57,0,0,0,0.23,0.14,0:1.25 10|0:0,0,0,0,0,0,0.14,0.28,0,0.86,0,0,0,0.08,0.02,0:1.41667 6|0:0,0,0,0,0,0.79,0,0.21,0,0.06,0,0,0,0.08,0.01,0:1.16667 0|0:0,0,0,0,0,0,0.01,0,0,0,0,0,0,0.38,0,0:1.5 10|15:0,0,0,0,0,0,0,0.01,0,0.99,0,0,0,0.04,0.94,0:1.58333 7|7:0,0,0,0,0,0,1.94,0.04,0,0,0,0,0,0.02,0,0:1 0|10:0,0,0,0,0,0,0,0.43,0,0.84,0,0,0,0.16,0,0:1.41667 10|10:0,0,0,0,0,0.01,0,0.43,0,1.56,0,0,0,0,0,0:1.33333 14|8:0,0,0,0,0,0,0,1,0,0,0,0,0,1,0,0:1.41667 10|8:0,0,0,0,0,0.1,0.31,0.34,0,1.23,0,0,0,0,0,0:1.25 0|10:0,0,0,0,0,0,0,0,0,1,0,0,0,0.3,0.09,0:1.41667 7|14:0,0,0,0,0,0,1.01,0,0,0.09,0,0,0,0.78,0,0:1.33333 10|7:0,0,0,0,0,0,1.02,0.08,0,0.9,0,0,0,0,0,0:1.16667 7|10:0,0,0,0,0,0,0.5,0.55,0,0.75,0,0,0,0.14,0,0:1.16667 0|14:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0.99,0.49,0:1.58333 8|8:0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0:1.16667 10|14:0,0,0,0,0,0,0.03,0.03,0,0.94,0,0,0,0.99,0.01,0:1.5 8|10:0,0,0,0,0,0.02,0.18,1.04,0,0.57,0,0,0,0.03,0.04,0:1.25 14|8:0,0,0,0,0,0,0,1,0,0.04,0,0,0,0.64,0,0:1.41667 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1.9,0,0:1.66667 8|7:0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0:1.08333 0|7:0,0,0,0,0,0,0.96,0.04,0,0.4,0,0,0,0,0.03,0:1.25 8|14:0,0,0,0,0,0,0,1,0,0,0,0,0,1,0,0:1.41667 5|10:0,0,0,0,0.99,0.03,0.01,0.03,0,0.94,0,0,0,0,0,0:1 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0.05,0:1.33333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.53,0.06,0:1.5 14|10:0,0,0,0,0,0,0,0,0,1,0,0,0,0.99,0.01,0:1.5 8|7:0,0,0,0,0,0,0.73,1.2,0,0.04,0,0,0,0,0,0:1.08333 8|8:0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0:1.16667 6|15:0,0,0,0,0.49,0.51,0,0,0,0,0,0,0,0,0.99,0:1.33333 10|14:0,0,0,0,0,0,0,0.03,0,1.03,0,0,0,0.66,0,0:1.5 14|10:0,0,0,0,0,0.02,0,0.33,0,0.65,0,0,0,0.84,0.04,0:1.5 15|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.44,1.06,0:1.66667 10|0:0,0,0,0,0,0,0,0,0,1.25,0,0,0,0,0,0:1.41667 14|6:0,0,0,0,0,1,0.15,0,0,0.01,0,0,0,0.67,0.01,0:1.25 10|8:0,0,0,0,0,0,0,0.97,0,1.03,0,0,0,0,0,0:1.25 10|0:0,0,0,0,0,0,0.04,0.03,0,0.65,0,0,0,0.09,0.01,0:1.41667 10|8:0,0,0,0,0,0,0,0.99,0,0.94,0,0,0,0.07,0,0:1.25 10|8:0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0:1.25 0|10:0,0,0,0,0,0,0.03,0.46,0,0.51,0,0,0,0.01,0,0:1.41667 0|14:0,0,0,0,0,0,0,0.03,0,0.03,0,0,0,0.9,0.01,0:1.58333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.03,0.13,0:1.5 10|0:0,0,0,0,0,0,0,0,0,0.44,0,0,0,0.43,0.12,0:1.41667 7|10:0,0,0,0,0,0,0.99,0.01,0,1,0,0,0,0,0,0:1.16667 8|10:0,0,0,0,0,0.15,0.3,0.34,0,0.92,0,0,0,0.02,0.01,0:1.25 +21 16179938 STR_869845 AAAAAAAAAAAACT AAAAAAAAAAACT,AAAAAAAAACAACT,AAAAAAAAAAAAACT,AAAAAAAAAAAAAACG,AAAAAAAAAAAAAACT . PASS DR2=0,0,0,0,1;AF=0,0,0,0,0.1604;END=16179949;IMP;START=16179938;PERIOD=1;DSLEN=11.0,14.0 GT:DS:TRDS 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|5:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 5|5:0,0,0,0,2:2 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 5|5:0,0,0,0,2:2 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0.04:0.666667 0|5:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|5:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|5:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 +21 16184196 STR_869847 TTTTTTTTTTTTTTTTTTTGAGAC TTTTTTTTTTTTTTTTTTGAGAC,TTTTTTTTTTTTTTTTTTGAGAT,TTTTTTTTTTTTTTTTTTTAGAC,TTTTTTTTTTTTTTTTTTTTAGAC,TTTTTTTTTTTTTTTTTTTTGAGAC,TTTTTTTTTTTTTTTTTTTTTAGAC . PASS DR2=0.76,0,0,0.69,0.96,0;AF=0.0152,0,0,0.145,0.0656,0;END=16184214;IMP;START=16184196;PERIOD=1;DSLEN=18.0,20.0 GT:DS:TRDS 0|5:0,0,0,0.14,0.56,0:1.5 0|4:0,0,0,0.93,0,0:1 0|0:0,0,0,0,0,0:1 4|0:0,0,0,1.03,0,0:1 4|0:0,0,0,0.52,0,0:1 0|0:0,0,0,0.04,0,0:1 0|0:0,0,0,0.14,0,0:1 4|0:0,0,0,0.79,0,0:1 5|0:0,0,0,0.01,1,0:1.5 0|4:0,0,0,0.86,0,0:1 4|0:0,0,0,0.65,0,0:1 0|0:0.39,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0.12,0,0:1 0|5:0,0,0,0.2,1,0:1.5 0|0:0,0,0,0.05,0,0:1 0|4:0,0,0,1.01,0,0:1 0|0:0.04,0,0,0.17,0,0:1 4|0:0,0,0,0.56,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0.02,0,0:1 0|0:0.04,0,0,0.13,0,0:1 0|0:0,0,0,0.02,0,0:1 0|4:0,0,0,0.99,0,0:1 0|0:0,0,0,0,0,0:1 0|4:0,0,0,0.91,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0.09,0,0:0.5 0|0:0,0,0,0.06,0,0:1 0|0:0,0,0,0.01,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0.3,0,0:1 0|0:0,0,0,0.03,0,0:1 0|0:0,0,0,0.01,0,0:1 4|0:0,0,0,1.02,0,0:1 0|5:0,0,0,0,1,0:1.5 0|4:0,0,0,1.06,0,0:1 0|0:0,0,0,0,0,0:1 4|5:0,0,0,0.5,1,0:1.5 0|0:0.01,0,0,0.1,0,0:1 0|0:0,0,0,0,0,0:1 0|4:0,0,0,0.56,0,0:1 0|4:0.04,0,0,0.86,0,0:1 0|0:0,0,0,0.12,0,0:1 0|5:0,0,0,0.08,1,0:1.5 0|5:0,0,0,0.03,1,0:1.5 0|0:0,0,0,0.4,0,0:1 +21 16193255 STR_869851 TTGGCAAAAAAAAAAAAAAAAAAAAT TTGGCAAAAAAAAAAAAAAAAAAAT,TTGGAAAAAAAAAAAAAAAAAAAAAT,TTGGCAAAAAAAAAAAAAAAAAAAAAT,TGGGAAAAAAAAAAAAAAAAAAAAAAAT,TTGGAAAAAAAAAAAAAAAAAAAAAAAT,TTGGCAAAAAAAAAAAAAAAAAAAAAAA,TTGGCAAAAAAAAAAAAAAAAAAAAAAT,TTGGAAAAAAAAAAAAAAAAAAAAAAAAT,TTGGCAAAAAAAAAAAAAAAAAAAAAAAA,TTGGCAAAAAAAAAAAAAAAAAAAAAAAT,TTGGAAAAAAAAAAAAAAAAAAAAAAAAAT,TTGGCAAAAAAAAAAAAAAAAAAAAAAAAT . PASS DR2=0,0,0.19,0,0.69,0,0.87,0.02,0,0.88,0,0;AF=0,0,0.003,0,0.043,0,0.5275,0.0003,0,0.3265,0,0;END=16193279;IMP;START=16193260;PERIOD=1;DSLEN=19.0,24.0 GT:DS:TRDS 0|10:0,0,0.01,0,0.01,0,0.17,0.01,0,0.74,0,0:1 10|7:0,0,0,0,0,0,0.95,0,0,1.05,0,0:1.4 7|10:0,0,0,0,0,0,1,0,0,1,0,0:1.4 0|7:0,0,0,0,0,0,1,0,0,0,0,0:0.8 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 7|10:0,0,0,0,0,0,0.57,0,0,1.43,0,0:1.4 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 10|10:0,0,0,0,0,0,0.06,0,0,1.94,0,0:1.6 7|7:0,0,0,0,0.01,0,1.99,0,0,0,0,0:1.2 7|7:0,0,0,0,0,0,1.91,0,0,0.09,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0:0.4 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 7|10:0,0,0,0,0.03,0,1,0,0,0.97,0,0:1.4 7|7:0,0,0,0,0,0,1.58,0,0,0.42,0,0:1.2 7|10:0,0,0,0,0,0,1,0,0,1,0,0:1.4 10|10:0,0,0,0,0,0,0.33,0,0,1.67,0,0:1.6 5|7:0,0,0,0,0.7,0,1.23,0,0,0.07,0,0:1.2 7|0:0,0,0.04,0,0,0,0.92,0.02,0,0.06,0,0:0.8 7|10:0,0,0,0,0,0,1,0,0,1,0,0:1.4 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 5|7:0,0,0,0,0.76,0,1.02,0,0,0.23,0,0:1.2 10|7:0,0,0.02,0,0,0,0.4,0,0,1.39,0,0:1.4 10|7:0,0,0,0,0,0,1.01,0,0,0.99,0,0:1.4 10|10:0,0,0,0,0,0,0.01,0,0,1.99,0,0:1.6 7|7:0,0,0,0,0.01,0,1.99,0,0,0,0,0:1.2 7|7:0,0,0,0,0,0,1.96,0,0,0.04,0,0:1.2 7|10:0,0,0,0,0,0,1.02,0,0,0.98,0,0:1.4 5|7:0,0,0,0,0.98,0,1.02,0,0,0,0,0:1.2 0|10:0,0,0,0,0,0,0.16,0,0,0.84,0,0:1 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 7|7:0,0,0,0,0.01,0,1.98,0,0,0.01,0,0:1.2 10|7:0,0,0,0,0,0,1,0,0,1,0,0:1.4 10|10:0,0,0,0,0,0,0.01,0,0,1.99,0,0:1.6 5|7:0,0,0,0,0.8,0,1.2,0,0,0,0,0:1.2 5|10:0,0,0,0,0.52,0,0.47,0,0,1.01,0,0:1.4 10|7:0,0,0,0,0.01,0,1.05,0,0,0.94,0,0:1.4 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 0|10:0,0,0,0,0,0,0,0,0,1,0,0:1 10|7:0,0,0,0,0,0,1.01,0,0,0.99,0,0:1.4 0|7:0,0,0.24,0,0,0,0.97,0,0,0.03,0,0:0.8 10|10:0,0,0,0,0,0,0.16,0,0,1.84,0,0:1.6 0|7:0,0,0,0,0,0,1,0,0,0,0,0:0.8 7|10:0,0,0,0,0,0,0.98,0,0,1.02,0,0:1.4 10|10:0,0,0,0,0,0,0.08,0,0,1.92,0,0:1.6 7|0:0,0,0,0,0,0,1,0,0,0,0,0:0.8 7|7:0,0,0,0,0,0,2,0,0,0,0,0:1.2 7|10:0,0,0,0,0,0,1,0,0,1,0,0:1.4 7|10:0,0,0,0,0,0,0.97,0,0,1.03,0,0:1.4 5|10:0,0,0,0,0.47,0,0.56,0,0,0.97,0,0:1.4 +21 16197777 STR_869853 AAAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAAGCATC AAAAAAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC,AAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAGCATC,AAAAAAAAAATAAAAAGAAAAGAAAAATAAACAAGAAAAAAAAAAGCATC,AAAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAGCATC,AAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAACATC,AAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC,AAAAAAAAAAGAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC,AAAAAAAAAATAAAAAGAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC,AAAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCAAC,AAAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATA,AAAAAAAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC,AAAAATAAAATAAAAATAAAAGAAAAATAAACAAGAAAAAAAAAAAGCATC . PASS DR2=0,0,0,0.62,0,1,0,0,0,0,0.91,0;AF=0,0,0,0.0466,0,0.1603,0,0,0,0,0.6903,0;END=16197823;IMP;START=16197777;PERIOD=1;DSLEN=40.0,47.0 GT:DS:TRDS 0|11:0,0,0,0,0,0,0,0,0,0,0.94,0:1.85714 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 0|6:0,0,0,0,0,1,0,0,0,0,0,0:1.71429 11|4:0,0,0,0.77,0,0,0,0,0,0,1.23,0:1.57143 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0,0:2 6|6:0,0,0,0,0,2,0,0,0,0,0,0:1.42857 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 11|11:0,0,0,0.23,0,0,0,0,0,0,1.77,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|0:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 11|11:0,0,0,0.33,0,0,0,0,0,0,1.67,0:1.71429 6|6:0,0,0,0,0,2,0,0,0,0,0,0:1.42857 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0.03,0,0.03,0,0,0,0,1.73,0:1.71429 11|6:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 4|11:0,0,0,0.51,0,0,0,0,0,0,1.49,0:1.57143 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 6|11:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 0|11:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 11|4:0,0,0,1.07,0,0,0,0,0,0,0.93,0:1.57143 11|11:0,0,0,0.1,0,0,0,0,0,0,1.9,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 6|11:0,0,0,0.01,0,1,0,0,0,0,0.99,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|6:0,0,0,0,0,1,0,0,0,0,0.99,0:1.57143 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 0|11:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 11|6:0,0,0,0,0,1,0,0,0,0,1,0:1.57143 0|11:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 0|11:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|0:0,0,0,0,0,0,0,0,0,0,1,0:1.85714 4|4:0,0,0,1.61,0,0,0,0,0,0,0.39,0:1.42857 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 11|11:0,0,0,0,0,0,0,0,0,0,2,0:1.71429 +21 16208752 STR_869857 TTTTTTTTTTTTTTTG TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTG . PASS DR2=1,0.94,0,0;AF=0.16,0.653,0,0;END=16208766;IMP;START=16208752;PERIOD=1;DSLEN=14.0,17.0 GT:DS:TRDS 0|0:0,0.38,0,0:0.666667 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 0|1:1,0,0,0:0.333333 2|2:0,2,0,0:1.33333 1|2:1,0.88,0,0:0.666667 2|2:0,2,0,0:1.33333 1|2:1,0.99,0,0:0.666667 0|2:0,0.99,0,0:1 1|2:1,1,0,0:0.666667 2|2:0,2,0,0:1.33333 0|0:0,0,0,0:0.666667 1|1:1.99,0,0,0:0 2|2:0,2,0,0:1.33333 1|2:1,1,0,0:0.666667 2|0:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 2|2:0,1.95,0,0:1.33333 1|1:2,0,0,0:0 2|2:0,2,0,0:1.33333 2|2:0.02,1.71,0,0:1.33333 2|1:1,1,0,0:0.666667 2|2:0,2,0,0:1.33333 1|2:1,1,0,0:0.666667 2|2:0,1.9,0,0:1.33333 1|2:1,1,0,0:0.666667 1|2:1,1,0,0:0.666667 0|2:0,0.96,0,0:1 2|2:0,1.91,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 1|0:0.99,0.01,0,0:0.333333 2|2:0,2,0,0:1.33333 2|1:1,1,0,0:0.666667 2|2:0,1.69,0,0:1.33333 0|0:0,0.11,0,0:0.666667 2|1:1,1,0,0:0.666667 0|2:0,1,0,0:1 2|0:0,1,0,0:1 0|2:0,1,0,0:1 2|2:0,2,0,0:1.33333 2|2:0,2,0,0:1.33333 2|0:0,1,0,0:1 2|2:0,1.94,0,0:1.33333 2|0:0,0.85,0,0:1 2|0:0,1.01,0,0:1 2|2:0,2,0,0:1.33333 +21 16244063 STR_869862 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0.86,0.58,0.83,0,0,0.93,0.9,0.83,0.89,0.87,0.74,0.36,0,0;AF=0,0.0244,0.0727,0.0497,0,0,0.1204,0.0232,0.0132,0.0215,0.0504,0.0183,0.0041,0,0;END=16244098;IMP;START=16244063;PERIOD=2;DSLEN=16.0,31.0 GT:DS:TRDS 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 7|0:0,0,0,0,0,0,0.98,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 8|0:0,0.02,0.11,0,0,0,0,1,0,0,0,0,0,0,0:0.666667 0|0:0,0,0.18,0.07,0,0,0.05,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0.26,0.01,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.03,0.47,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 4|0:0,0,0.12,1,0,0,0,0,0,0,0,0,0,0,0:0.4 12|0:0,0,0.01,0,0,0,0,0,0,0,0,0.99,0,0,0:0.933333 0|0:0,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0.35,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.01,0.46,0.05,0,0,0,0.32,0,0,0,0,0,0,0:0.266667 0|0:0,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0.04,0.01,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.01,0.12,0.01,0,0,0.36,0,0,0,0,0,0,0,0:0.266667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.01,0.03,0.05,0,0,0,0,0,0.01,0.01,0,0.01,0,0:0.266667 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0,0,0:0.866667 0|0:0,0,0.28,0.07,0,0,0,0,0,0,0,0,0,0,0:0.266667 2|10:0,1,0,0,0,0,0,0,0,0.96,0.04,0,0,0,0:0.733333 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0,0:0.933333 0|0:0,0,0.01,0.02,0,0,0,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.02,0,0.16,0,0,0,0.01,0,0,0,0,0,0,0:0.266667 0|0:0,0.31,0.03,0.01,0,0,0,0,0.31,0,0,0,0,0,0:0.266667 12|0:0,0,0.01,0,0,0,0.03,0,0.01,0.01,0.01,0.52,0.02,0,0:0.933333 9|11:0,0,0,0.02,0,0,0,0,1,0.03,0.64,0.32,0,0,0:1.33333 0|0:0,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 3|0:0,0,0.95,0.01,0,0,0,0,0,0,0,0,0,0,0:0.333333 0|0:0,0,0.45,0,0,0,0.02,0,0,0,0,0,0,0,0:0.266667 0|0:0,0.01,0.02,0,0,0,0,0,0,0,0,0,0.38,0,0:0.266667 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 7|0:0,0,0,0.01,0,0,1,0,0,0,0,0,0,0,0:0.6 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.4 11|10:0,0,0,0,0,0,0,0,0,1.07,0.93,0,0,0,0:1.4 0|0:0,0.02,0.09,0,0,0,0.1,0,0,0,0,0,0,0,0:0.266667 4|2:0,1,0,1,0,0,0,0,0,0,0,0,0,0,0:0.333333 7|8:0,0,0,0,0,0,1,0.99,0,0,0,0,0,0,0:1 0|3:0,0,0.9,0,0,0,0,0,0,0,0,0,0,0,0:0.333333 7|11:0,0,0,0,0,0,1,0,0,0,1,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.266667 4|11:0,0,0,1,0,0,0,0,0,0,1,0,0,0,0:1 7|0:0,0,0.01,0,0,0,0.5,0,0,0.08,0.42,0,0,0,0:0.6 3|3:0,0,1.87,0.04,0,0,0,0,0,0,0,0,0,0,0:0.4 0|7:0,0,0.18,0,0,0,1,0,0,0,0,0,0,0,0:0.6 0|7:0,0.01,0.01,0.02,0,0,1.03,0,0,0.01,0,0,0.01,0,0:0.6 7|0:0,0,0.1,0.06,0,0,0.97,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0.35,0,0,0,0,0,0,0,0,0,0,0:0.266667 +21 16245299 STR_869864 TCTCAAAAAAAAAAAACAAGAAAAAA TCTCAAAAAAAAAAAAAAGAAAAAA,TCTCAAAAAAAAAAACAAGAAAAAA,TATAAAAAAAAAAAAACAAGAAAAAA,TCTAAAAAAAAAAAAACAAGAAAAAA,TCTCAAAAAAAAAAAAAAAGAAAAAA,TCTAAAAAAAAAAAAAAAAAGAAAAAA,TCTCAAAAAAAAAAAAAAAAGAAAAAA,TCTCAAAAAAAAAAAAACAAGAAAAAA . PASS DR2=0,0.96,0,0.54,0,0,0.97,0;AF=0,0.0851,0,0.025,0,0,0.039,0;END=16245324;IMP;START=16245303;PERIOD=1;DSLEN=21.0,23.0 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0:1 4|0:0,0,0,0.83,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 7|0:0,0,0,0,0,0,1,0:1.5 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.09,0,0,0,0:1 0|0:0,0,0,0.05,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.02,0,0,0.01,0:1 0|4:0,0,0,0.68,0,0,0,0:1 0|7:0,0,0,0.04,0,0,0.9,0:1.5 0|0:0,0,0,0.01,0,0,0,0:1 0|0:0,0,0,0.15,0,0,0,0:1 0|0:0,0,0,0.03,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.01,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.01,0,0,0,0:1 0|0:0,0,0,0.01,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0.01,0,0,0,0,0,0:1 7|2:0,1,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.11,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 2|2:0,2,0,0,0,0,0,0:0 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|7:0,0,0,0,0,0,1,0:1.5 0|0:0,0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0:0.5 0|0:0,0,0,0.43,0,0,0,0:1 0|2:0,1,0,0,0,0,0,0:0.5 0|0:0,0.47,0,0,0,0,0,0:1 0|0:0,0,0,0.01,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0.03,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.03,0,0,0,0:1 +21 16249380 STR_869868 AAAAAAAAAAAAAAGAAAAAAAAA AAAAAAAAAAAAAGAAAAAAAAA,AAAAAAAAAGAAAAGAAAAAAAAA,AAAAAAAAAAAAAAAGAAAAAAAAA,AAAAAAAAAAAAAAGAAAAAAAAAA,AAAAAAAAAAAAAAGAAAAAAAAAAA . PASS DR2=0.89,0,0,1,0.94;AF=0.0432,0,0,0.01,0.1296;END=16249403;IMP;START=16249380;PERIOD=1;DSLEN=23.0,26.0 GT:DS:TRDS 0|4:0,0,0,1,0:1 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0.01,0,0,0,0:0.666667 1|0:1.28,0,0,0,0:0.333333 0|0:0,0,0,0,0.07:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0.01,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|1:0.9,0,0,0,0:0.333333 0|0:0.01,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|5:0,0,0,0,0.99:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0.03,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 5|5:0,0,0,0,2:2 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0.03,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 1|0:1,0,0,0,0:0.333333 0|0:0.01,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0.04:0.666667 5|0:0,0,0,0,0.99:1.33333 5|0:0,0,0,0,0.99:1.33333 0|0:0,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0.29:0.666667 0|0:0,0,0,0,0:0.666667 5|1:1,0,0,0,1:1 0|0:0.04,0,0,0,0:0.666667 5|0:0,0,0,0,1:1.33333 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 5|0:0.01,0,0,0,0.51:1.33333 0|0:0,0,0,0,0:0.666667 0|5:0,0,0,0,1:1.33333 0|5:0.01,0,0,0,1.09:1.33333 5|0:0.01,0,0,0,0.98:1.33333 0|0:0,0,0,0,0:0.666667 +21 16251006 STR_869869 GCAAAAAAAAAAAAA GCAAAAAAAAAAAA,GAAAAAAAAAAAAAA,GCAAAAAAAAAAAAAA . 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PASS DR2=0,0,0,0,0,0,0,0.96,0;AF=0,0,0,0,0,0,0,0.5526,0;END=16271555;IMP;START=16271541;PERIOD=1;DSLEN=14.0,18.0 GT:DS:TRDS 8|0:0,0,0,0,0,0,0,1,0:1 8|0:0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0.12,0:0.5 8|8:0,0,0,0,0,0,0,2,0:1.5 8|8:0,0,0,0,0,0,0,2,0:1.5 8|0:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,1,0:1 8|0:0,0,0,0,0,0,0,1,0:1 8|0:0,0,0,0,0,0,0,1.03,0:1 0|0:0,0,0,0,0,0,0,0.12,0:0.5 0|0:0,0,0,0,0,0,0,0.39,0:0.5 8|8:0,0,0,0,0,0,0,2,0:1.5 8|0:0,0,0,0,0,0,0,1,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 0|8:0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0:0.5 0|8:0,0,0,0,0,0,0,1.11,0:1 0|8:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,1.23,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 8|8:0,0,0,0,0,0,0,2,0:1.5 0|0:0,0,0,0,0,0,0,0,0:0.5 8|0:0,0,0,0,0,0,0,1,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 0|0:0,0,0,0,0,0,0,0,0:0.5 0|8:0,0,0,0,0,0,0,1.25,0:1 0|0:0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0,0,0.01,0:0.5 8|8:0,0,0,0,0,0,0,2,0:1.5 0|0:0,0,0,0,0,0,0,0.01,0:0.5 8|8:0,0,0,0,0,0,0,2,0:1.5 8|8:0,0,0,0,0,0,0,2,0:1.5 0|8:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,1.02,0:1 8|0:0,0,0,0,0,0,0,1,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 8|0:0,0,0,0,0,0,0,1,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 0|8:0,0,0,0,0,0,0,1,0:1 8|0:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,1,0:1 8|8:0,0,0,0,0,0,0,2,0:1.5 8|0:0,0,0,0,0,0,0,1,0:1 0|8:0,0,0,0,0,0,0,0.99,0:1 0|8:0,0,0,0,0,0,0,1,0:1 8|0:0,0,0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0,0,0:0.5 8|8:0,0,0,0,0,0,0,2,0:1.5 8|0:0,0,0,0,0,0,0,1,0:1 +21 16319166 STR_869896 AAATAAATAAATAAATAAATAAATAAATAAATAAA AAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAA,AAATAATAAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA . PASS DR2=0,0.97,0,0.93,0.97,0.79,0.7,0;AF=0,0.338,0,0.4857,0.0103,0.102,0.0388,0;END=16319200;IMP;START=16319166;PERIOD=4;DSLEN=6.75,13.75 GT:DS:TRDS 2|4:0,1,0,1,0,0,0,0:0.571429 2|5:0,1,0,0,1,0,0,0:0.714286 2|7:0,1,0,0.07,0,0.08,0.86,0:1 2|4:0,1,0,1,0,0,0,0:0.571429 4|2:0,1,0,0.71,0,0.26,0.03,0:0.571429 2|4:0,0.64,0,1,0,0,0,0:0.571429 7|2:0,0.99,0,0.03,0,0.24,0.74,0:1 2|4:0,1,0,1,0,0,0,0:0.571429 2|4:0,1.01,0,0.98,0,0.01,0,0:0.571429 4|4:0,0,0,2,0,0,0,0:0.857143 4|4:0,0,0,2,0,0,0,0:0.857143 6|4:0,0.31,0,0.93,0.01,0.75,0,0:1.14286 4|2:0,0.99,0,1,0,0,0,0:0.571429 2|6:0,1,0,0.43,0,0.57,0,0:0.857143 4|2:0,1,0,0.82,0,0,0.18,0:0.571429 6|2:0,0.99,0,0.11,0,0.5,0.38,0:0.857143 4|4:0,0,0,1.99,0,0.01,0,0:0.857143 4|4:0,0,0,1.66,0,0.34,0,0:0.857143 4|2:0,1,0,1,0,0,0,0:0.571429 2|2:0,2,0,0,0,0,0,0:0.285714 2|4:0,1,0,0.99,0,0,0.01,0:0.571429 4|4:0,0,0,2,0,0,0,0:0.857143 4|4:0,0,0,2,0,0,0,0:0.857143 2|2:0,1.99,0,0.01,0,0,0,0:0.285714 2|2:0,2,0,0,0,0,0,0:0.285714 4|4:0,0.01,0,1.98,0,0.01,0.01,0:0.857143 2|4:0,1,0,1,0,0,0,0:0.571429 4|2:0,0.98,0,0.98,0,0.02,0,0:0.571429 4|4:0,0,0,2,0,0,0,0:0.857143 0|2:0,0.99,0,0,0,0,0,0:0.428571 4|6:0,0,0,1,0,1,0,0:1.14286 4|4:0,0,0,1.99,0,0,0.01,0:0.857143 4|4:0,0,0,2,0,0,0,0:0.857143 4|2:0,1,0,1,0,0,0,0:0.571429 4|4:0,0,0,1.99,0,0,0.01,0:0.857143 4|2:0,0.98,0,0.98,0,0,0.02,0:0.571429 4|4:0,0,0,1.98,0,0,0.02,0:0.857143 2|2:0,1.96,0,0,0,0,0,0:0.285714 4|4:0,0,0,1.93,0.02,0.02,0.03,0:0.857143 4|7:0,0,0,1,0,0,1,0:1.28571 4|4:0,0,0,2,0,0,0,0:0.857143 6|2:0,1,0,0,0,1,0,0:0.857143 2|6:0,1,0,0,0,1,0,0:0.857143 4|2:0,1,0,1,0,0,0,0:0.571429 4|4:0,0,0,1.98,0,0.01,0.01,0:0.857143 2|0:0,1,0,0,0,0,0,0:0.428571 2|6:0,0.96,0,0,0,0.99,0.01,0:0.857143 2|6:0,1,0,0,0,1,0,0:0.857143 6|7:0,0,0,0.03,0,1.4,0.56,0:1.57143 4|6:0,0,0,1,0,1,0,0:1.14286 +21 16319719 STR_869897 TTTTTTTTTTT TTTTTTTTTT,TTTTTTTTTTTT . PASS DR2=0,0.68;AF=0,0.0741;END=16319729;IMP;START=16319719;PERIOD=1;DSLEN=10.0,12.0 GT:DS:TRDS 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0.01:1 0|0:0,0.27:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|2:0,0.82:1.5 2|0:0,0.89:1.5 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0.06:1 0|0:0,0.1:1 0|0:0,0:1 0|0:0,0.01:1 2|0:0,0.82:1.5 0|0:0,0.02:1 0|0:0,0:1 0|0:0,0.15:1 2|0:0,1:1.5 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 2|0:0,0.61:1.5 0|0:0,0:1 0|0:0,0.16:1 0|0:0,0:1 0|0:0,0:1 2|0:0,1:1.5 0|0:0,0.07:1 2|0:0,0.53:1.5 0|0:0,0:1 0|0:0,0.03:1 0|0:0,0:1 0|0:0,0.04:1 0|0:0,0:1 0|0:0,0.43:1 0|0:0,0:1 0|0:0,0.02:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0.36:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 +21 16320646 STR_869898 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0,0.91,0.82,0.95,0.93,0.88,0.33,0,0.16,0,0,0;AF=0,0,0,0,0.011,0.072,0.0105,0.4534,0.1145,0.0203,0,0.0056,0,0,0;END=16320686;IMP;START=16320646;PERIOD=2;DSLEN=15.5,24.5 GT:DS:TRDS 0|8:0,0,0,0,0,0,0,1,0,0.05,0,0,0,0,0:1 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.11111 0|6:0,0,0,0,0,0.93,0.03,0.07,0,0.02,0,0.02,0,0,0:0.888889 0|8:0,0,0,0,0,0,0,0.98,0.02,0.38,0,0,0,0,0:1 8|5:0,0,0,0,1,0.05,0,0.9,0.05,0,0,0,0,0,0:0.777778 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 6|0:0,0,0,0,0,0.79,0.01,0.21,0,0.25,0,0,0,0,0:0.888889 0|8:0,0,0,0,0,0.26,0,0.74,0,0,0,0,0,0,0:1 0|8:0,0,0,0,0.02,0,0,0.95,0.05,0,0,0,0,0,0:1 8|9:0,0,0,0,0,0,0,1,1,0,0,0,0,0,0:1 9|8:0,0,0,0,0,0,0,1.33,0.67,0,0,0,0,0,0:1 6|8:0,0,0,0,0,0.93,0,0.98,0.08,0,0,0,0,0,0:0.777778 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 10|6:0,0,0,0,0,0.5,0,0.38,0.12,0.59,0,0,0,0,0:1 8|0:0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,0:1 6|0:0,0,0,0,0,0.57,0,0.02,0.42,0.01,0,0.01,0,0,0:0.888889 8|8:0,0,0,0,0,0,0,1.96,0.04,0,0,0,0,0,0:0.888889 8|8:0,0,0,0,0,0.01,0,1.94,0.06,0,0,0,0,0,0:0.888889 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11111 0|8:0,0,0,0,0,0.02,0,0.94,0.04,0,0,0,0,0,0:1 8|6:0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:0.777778 8|8:0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.888889 0|0:0,0,0,0,0,0,0,0,0,0.29,0,0.05,0,0,0:1.11111 0|0:0,0,0,0,0,0,0,0,0,0.14,0,0.27,0,0,0:1.11111 8|8:0,0,0,0,0,0.02,0,1.98,0,0,0,0,0,0,0:0.888889 0|8:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 8|0:0,0,0,0,0,0,0,1,0,0,0,0.02,0,0,0:1 8|8:0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.888889 0|0:0,0,0,0,0,0,0,0,0,0.29,0,0.05,0,0,0:1.11111 8|9:0,0,0,0,0,0,0,1,1,0,0,0,0,0,0:1 9|8:0,0,0,0,0,0.03,0,1.17,0.8,0,0,0,0,0,0:1 8|8:0,0,0,0,0,0.01,0,1.99,0,0,0,0,0,0,0:0.888889 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 8|8:0,0,0,0,0,0,0,1.97,0.03,0,0,0,0,0,0:0.888889 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 8|8:0,0,0,0,0,0.01,0,1.99,0.01,0,0,0,0,0,0:0.888889 0|0:0,0,0,0,0,0,0.02,0,0,0,0,0.13,0,0,0:1.11111 8|8:0,0,0,0,0,0,0,1.93,0.07,0,0,0,0,0,0:0.888889 8|6:0,0,0,0,0,1,0,1,0,0,0,0,0,0,0:0.777778 8|8:0,0,0,0,0,0.07,0,1.92,0.01,0,0,0,0,0,0:0.888889 9|0:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.11111 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0:1.11111 8|7:0,0,0,0,0,0,1,1,0,0,0,0,0,0,0:0.888889 8|8:0,0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.888889 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.11111 0|9:0,0,0,0,0,0.01,0,0,0.99,0.01,0,0,0,0,0:1.11111 0|9:0,0,0,0,0.07,0,0,0,1,0,0,0,0,0,0:1.11111 9|6:0,0,0,0,0,0.99,0,0.01,1,0,0,0,0,0,0:0.888889 8|9:0,0,0,0,0,0,0,1.01,0.99,0,0,0,0,0,0:1 +21 16328982 STR_869900 TCAAAAAGAAAAAAAAAAAAAAA TCAAAAAGAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAAAAAAA,TAAAAAAGAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAAAAAAA,TCAAAAAAAAAAAAAAAAAAAAAA,TCAAAAAGAAAAAAAAAAAAAAAA,TCAAAAAGAAAAAAAAAAAAAAAAA . PASS DR2=0,0.85,0,0.63,0,0.95,0;AF=0,0.0311,0,0.0435,0,0.1117,0;END=16329004;IMP;START=16328984;PERIOD=1;DSLEN=20.0,23.0 GT:DS:TRDS 0|0:0,0,0,0.05,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|6:0,0,0,0.01,0,1,0:1 0|2:0,0.95,0,0.46,0,0,0:0.666667 6|0:0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0:0.666667 6|0:0,0,0,0.27,0,1,0:1 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0.05,0,0,0:0.666667 0|4:0,0.06,0,1,0,0,0:0.666667 4|0:0,0,0,0.72,0,0,0:0.666667 0|0:0,0,0,0.04,0,0.5,0:0.666667 0|0:0,0,0,0.21,0,0,0:0.666667 0|0:0,0,0,0.01,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 6|0:0,0,0,0.01,0,0.69,0:1 0|2:0,0.96,0,0.02,0,0,0:0.666667 0|0:0,0.01,0,0.03,0,0,0:0.666667 2|0:0,0.89,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0.04,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0.1,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0.14,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 4|0:0,0.02,0,0.9,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0.1,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0.37,0,0,0:0.666667 0|0:0,0.02,0,0.02,0,0,0:0.666667 0|6:0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0:0.666667 6|0:0,0,0,0,0,1,0:1 0|6:0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0:0.666667 0|6:0,0,0,0,0,0.99,0:1 0|0:0,0,0,0,0,0,0:0.666667 0|6:0,0,0,0,0,1,0:1 0|6:0,0,0,0,0,1,0:1 0|6:0,0,0,0,0,1,0:1 0|0:0,0,0,0,0,0,0:0.666667 +21 16334315 STR_869902 CAATATATATATATATACATATTATATATATATATATATATATATATATAAAATATATA CAATATATATATATACATATTATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATAAAATATATA,CAATATATATATATATATACATATTATATATATATATATATAAAATATATA,CTATATATATATATACATATTATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTTTATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTTTATATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATATATATATAAAATATATA,CAATATATATATATATATACATATTATATATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATATATATATATAAAATATATA,CAATATATATATATATACATATTATATATATATATATATATATATATATATATATAAAATATATA . PASS DR2=0,0.99,1,0,0,0.99,1,0.71,0,0.03,0.49,0,0.6,0;AF=0,0.0199,0.27,0,0,0.0995,0.27,0.0278,0,0.0006,0.0563,0,0.0425,0;END=16334373;IMP;START=16334317;PERIOD=2;DSLEN=23.5,31.5 GT:DS:TRDS 11|7:0,0,0,0,0,0,1,0,0,0,0.76,0,0.07,0:1.125 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.75 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.875 11|3:0,0,1,0,0,0,0,0.09,0,0,0.54,0,0,0:0.875 6|11:0,0,0,0,0,0.95,0,0,0,0,1,0,0,0:1 13|7:0,0,0,0,0,0,1,0,0,0,0,0,0.9,0:1.25 6|0:0,0,0,0,0,1,0,0,0,0.04,0.29,0,0.3,0:0.875 0|3:0,0,1,0,0,0,0,0,0,0,0.02,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0,0,0.07,0,0,0:0.75 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0:0.25 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 7|3:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 3|13:0,0,1,0,0,0,0,0,0,0,0.21,0,0.57,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0.24,0,0,0:0.75 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 7|0:0,0,0,0,0,0,1,0,0,0,0.01,0,0,0:1 7|3:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 3|2:0,0.99,1.01,0,0,0,0,0,0,0,0,0,0,0:0.125 3|0:0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.75 0|8:0,0,0,0,0,0,0,0.94,0,0,0.03,0,0,0:1.125 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0:0.25 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0.02,0,0,0.55,0,0.03,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0.02,0.14,0,0.27,0:1.25 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0:0.625 7|11:0,0,0,0,0,0,1,0.07,0,0,0.45,0,0.14,0:1.125 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.75 7|11:0,0,0,0,0,0,1,0,0,0,0.47,0,0.31,0:1.125 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0:0.25 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 7|0:0,0,0,0,0,0,1,0.08,0,0,0,0,0,0:1 0|3:0,0.01,0.99,0,0,0,0,0.11,0,0,0.01,0,0.01,0:0.75 3|8:0,0,1,0,0,0,0,0.39,0,0,0.23,0,0,0:0.625 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.75 13|0:0,0,0,0,0,0,0,0.12,0,0,0.54,0,0.61,0:1.5 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0,0:0.25 7|6:0,0,0,0,0,1,1,0,0,0,0,0,0,0:0.625 7|7:0,0,0,0,0,0,2,0,0,0,0,0,0,0:0.75 6|8:0,0,0,0,0,1,0,0.96,0,0,0.02,0,0.01,0:0.75 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.875 3|13:0,0,1,0,0,0,0,0,0,0,0,0,1,0:1 7|6:0,0,0,0,0,1,1,0,0,0,0,0,0,0:0.625 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0,0:0.875 0|6:0,0,0,0,0,1,0,0,0,0,0.05,0,0,0:0.875 7|6:0,0,0,0,0,1,1,0,0,0,0,0,0,0:0.625 3|7:0,0,1,0,0,0,1,0,0,0,0,0,0,0:0.5 +21 16336495 STR_869904 TTTTTTTTTTCTTTTT TTTTTTTTCTTTTT,TTTTTTTTTCTTTTT . PASS DR2=0,1;AF=0,0.6595;END=16336510;IMP;START=16336495;PERIOD=1;DSLEN=14.0,16.0 GT:DS:TRDS 0|2:0,1:1.5 0|2:0,1:1.5 0|2:0,1:1.5 0|2:0,1:1.5 2|0:0,0.95:1.5 0|2:0,1:1.5 2|0:0,1:1.5 0|2:0,1:1.5 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 0|2:0,1:1.5 2|0:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 0|0:0,0:2 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 0|0:0,0:2 0|0:0,0:2 2|2:0,2:1 0|2:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 0|2:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 0|0:0,0:2 2|2:0,2:1 2|2:0,2:1 2|2:0,2:1 2|0:0,1:1.5 0|2:0,1:1.5 2|0:0,1:1.5 2|2:0,2:1 2|2:0,2:1 0|2:0,1:1.5 0|2:0,1:1.5 2|2:0,2:1 2|2:0,2:1 +21 16346000 STR_869906 TTTTTTTTTTTTTTTTG TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTG . PASS DR2=0,0.96,0.43,0,0.94,0,0.99,0,0;AF=0,0.2579,0.0128,0,0.0427,0,0.2442,0,0;END=16346015;IMP;START=16346000;PERIOD=1;DSLEN=14.0,19.0 GT:DS:TRDS 0|2:0,1,0,0,0,0,0,0,0:0.6 0|7:0,0,0,0,0,0,1,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0:0.8 0|7:0,0,0,0,0,0,1,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0:0.8 0|3:0,0.43,0.57,0,0.2,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0:0.8 0|0:0,0,0,0,0,0,0,0,0:0.8 0|7:0,0,0,0,0,0,1,0,0:1.2 0|7:0,0.06,0,0,0.06,0,1.42,0,0:1.2 7|2:0,1,0,0,0,0,1,0,0:1 2|7:0,1,0,0,0,0,1,0,0:1 7|0:0,0,0,0,0,0,1,0,0:1.2 0|7:0,0,0,0,0,0,1,0,0:1.2 2|0:0,1,0,0,0,0,0,0,0:0.6 2|0:0,1,0,0,0,0,0,0,0:0.6 2|7:0,0.87,0.13,0,0,0,1,0,0:1 7|7:0,0,0,0,0,0,2,0,0:1.6 7|0:0,0,0,0,0,0,1,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0:0.8 0|2:0,1,0,0,0,0,0,0,0:0.6 7|0:0,0,0,0,0,0,1,0,0:1.2 2|2:0,2,0,0,0,0,0,0,0:0.4 0|0:0,0,0,0,0.01,0,0,0,0:0.8 0|0:0,0,0,0,0,0,0,0,0:0.8 7|2:0,1,0,0,0,0,1,0,0:1 0|7:0,0,0,0,0,0,1,0,0:1.2 2|0:0,1,0,0,0,0,0,0,0:0.6 2|2:0,2,0,0,0,0,0,0,0:0.4 2|0:0,0.98,0.02,0,0,0,0,0,0:0.6 7|2:0,1,0,0,0,0,1,0,0:1 7|0:0,0,0,0,0,0,1,0,0:1.2 7|2:0,1,0.01,0,0,0,0.99,0,0:1 2|0:0,0.97,0.03,0,0,0,0,0,0:0.6 0|7:0,0,0,0,0,0,1,0,0:1.2 7|0:0,0,0,0,0,0,1,0,0:1.2 2|2:0,1.93,0.07,0,0,0,0,0,0:0.4 0|0:0,0,0,0,0,0,0,0,0:0.8 7|7:0,0,0,0,0,0,2,0,0:1.6 2|0:0,1,0,0,0,0,0,0,0:0.6 2|2:0,1.54,0.46,0,0,0,0,0,0:0.4 5|0:0,0,0,0,1,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0:1 7|0:0,0,0,0,0,0,1,0,0:1.2 2|0:0,1,0,0,0,0,0,0,0:0.6 0|2:0,1,0,0,0,0,0,0,0:0.6 0|5:0,0,0,0,1,0,0,0,0:1 0|5:0,0,0,0,1,0,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0:0.6 7|2:0,1,0,0,0,0,1,0,0:1 +21 16346165 STR_869907 TTTTTTTTTTTTTTTTTTCCTG TTTTTTTTTTCCTG,TTTTTTTTTTTTTTTTTTCCTT,TTTTTTTTTTTTTTTTTTTCCTG,TTTTTTTTTTTTTTTTTTTTCTG,TTTTTTTTTTTTTTTTTTTCCCTG,TTTTTTTTTTTTTTTTTTTTCCTG,TTTTTTTTTTTTTTTTTTTTTCTG,TTTTTTTTTTTTTTTTTTTTTCCTG,TTTTTTTTTTTTTTTTTTTTTTCCTG . PASS DR2=0,0,0.95,0,0,1,0,0,0;AF=0,0,0.3552,0,0,0.2705,0,0,0;END=16346182;IMP;START=16346165;PERIOD=1;DSLEN=10.0,22.0 GT:DS:TRDS 0|6:0,0,0,0,0,1,0,0,0:1.5 0|3:0,0,1,0,0,0,0,0,0:1.41667 0|3:0,0,0.99,0,0,0,0,0,0:1.41667 0|3:0,0,1,0,0,0,0,0,0:1.41667 3|0:0,0,1,0,0,0,0,0,0:1.41667 0|6:0,0,0,0,0,1,0,0,0:1.5 3|0:0,0,0.96,0,0,0,0,0,0:1.41667 0|3:0,0,1,0,0,0,0,0,0:1.41667 0|3:0,0,1,0,0,0,0,0,0:1.41667 0|3:0,0,1.45,0,0,0.04,0,0,0:1.41667 3|6:0,0,1,0,0,1,0,0,0:1.58333 6|3:0,0,1,0,0,1,0,0,0:1.58333 3|0:0,0,1,0,0,0,0,0,0:1.41667 0|3:0,0,1.18,0,0,0,0,0,0:1.41667 6|0:0,0,0.01,0,0,1,0,0,0:1.5 6|0:0,0,0,0,0,1,0,0,0:1.5 6|3:0,0,1,0,0,1,0,0,0:1.58333 3|3:0,0,2,0,0,0,0,0,0:1.5 3|0:0,0,1,0,0,0,0,0,0:1.41667 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|6:0,0,0,0,0,1,0,0,0:1.5 3|3:0,0,2,0,0,0,0,0,0:1.5 6|6:0,0,0,0,0,2,0,0,0:1.66667 0|0:0,0,0.37,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:1.33333 3|6:0,0,1,0,0,1,0,0,0:1.58333 0|3:0,0,1,0,0,0,0,0,0:1.41667 6|0:0,0,0.14,0,0,1,0,0,0:1.5 6|6:0,0,0,0,0,2,0,0,0:1.66667 6|0:0,0,0.11,0,0,1,0,0,0:1.5 3|6:0,0,1,0,0,1,0,0,0:1.58333 3|3:0,0,2,0,0,0,0,0,0:1.5 3|6:0,0,0.99,0,0,1.01,0,0,0:1.58333 6|0:0,0,0,0,0,1,0,0,0:1.5 0|3:0,0,1,0,0,0,0,0,0:1.41667 3|0:0,0,1.23,0,0,0,0,0,0:1.41667 6|6:0,0,0,0,0,2,0,0,0:1.66667 0|0:0,0,0.09,0,0,0,0,0,0:1.33333 3|3:0,0,2,0,0,0,0,0,0:1.5 6|3:0,0,1,0,0,1,0,0,0:1.58333 6|6:0,0,0,0,0,2,0,0,0:1.66667 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:1.33333 3|0:0,0,1,0,0,0,0,0,0:1.41667 6|3:0,0,1,0,0,1,0,0,0:1.58333 3|6:0,0,1,0,0,1,0,0,0:1.58333 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:1.33333 6|3:0,0,1,0,0,1,0,0,0:1.58333 3|6:0,0,1,0,0,1,0,0,0:1.58333 +21 16354174 STR_869909 TTTTTTTTTTTTTTTTTGA TTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTTTGA . PASS DR2=0,1,0,0.88,0.01,0.88,0,1,0,0.99;AF=0,0.1694,0,0.0599,0.0007,0.3411,0,0.1403,0,0.0297;END=16354190;IMP;START=16354174;PERIOD=1;DSLEN=15.0,20.0 GT:DS:TRDS 0|6:0,0,0,0,0,1.14,0,0,0,0:1 4|2:0,1,0,0.98,0,0,0,0,0,0:0.6 0|2:0,1,0,0,0,0.01,0,0,0,0:0.6 6|10:0,0,0,0,0,0.56,0,0.01,0,0.99:1.6 2|0:0,1,0,0,0,0,0,0,0,0:0.6 4|6:0,0,0,0.55,0,1.43,0,0,0,0:1 2|6:0,1,0,0.02,0.01,0.63,0,0,0,0:0.8 0|2:0,1,0,0,0,0.01,0,0,0,0:0.6 6|2:0,1,0,0,0,1,0,0,0,0:0.8 0|8:0,0,0,0.15,0,0.12,0,1,0,0:1.2 8|6:0,0,0,0,0,1,0,1,0,0:1.4 6|8:0,0,0,0,0,1,0,1,0,0:1.4 8|6:0,0,0,0.01,0,0.78,0,1,0,0:1.4 0|2:0,1,0,0,0.01,0,0,0,0,0:0.6 6|0:0,0,0,0,0,1.04,0,0,0,0:1 6|0:0,0,0,0.01,0,1.02,0,0,0,0:1 6|10:0,0,0,0,0,1,0,0,0,1:1.6 8|2:0,1,0,0,0,0,0,1,0,0:1 10|6:0,0,0,0,0,1,0,0.01,0,0.99:1.6 0|0:0,0,0,0,0.01,0,0,0,0,0:0.8 0|6:0,0,0,0,0,1.05,0,0,0,0:1 8|2:0,1,0,0,0,0,0,1,0,0:1 6|6:0,0,0,0,0,2,0,0,0,0:1.2 6|0:0,0,0,0.02,0,1,0,0,0,0:1 6|0:0,0,0,0.25,0.01,0.38,0,0,0,0:1 8|6:0,0,0,0,0,1,0,1,0,0:1.4 0|2:0,1,0,0,0,0,0,0,0,0:0.6 6|0:0,0,0,0,0,1.29,0,0,0,0:1 6|6:0,0,0,0,0,2,0,0,0,0:1.2 6|0:0,0,0,0,0.01,1.32,0,0,0,0:1 8|6:0,0,0,0,0,0.68,0,1,0,0:1.4 8|2:0,1,0,0,0,0,0,1,0,0:1 2|6:0,1,0,0,0,1,0,0,0,0:0.8 6|0:0,0,0,0,0,1,0,0,0,0:1 0|8:0,0,0,0,0,0.05,0,1,0,0:1.2 8|0:0,0,0,0,0.02,0,0,1,0,0:1.2 6|6:0,0,0,0,0,2,0,0,0,0:1.2 0|6:0,0,0,0,0.01,0.79,0,0,0,0:1 8|2:0,1,0,0,0,0,0,1,0,0:1 6|2:0,0.94,0,0.01,0,1,0,0,0,0:0.8 6|6:0,0,0,0,0,2,0,0,0,0:1.2 4|0:0,0,0,1,0,0.02,0,0,0,0:0.8 0|4:0,0,0,1,0,0,0,0,0,0:0.8 8|0:0,0,0,0,0,0,0,1,0,0:1.2 6|2:0,1,0,0,0,1,0,0,0,0:0.8 2|6:0,1,0,0,0,1,0,0,0,0:0.8 6|4:0,0,0,1,0,1,0,0,0,0:1 0|4:0,0,0,1,0,0,0,0,0,0:0.8 0|2:0,1,0,0,0,0,0,0,0,0:0.6 8|6:0,0,0,0,0,0.79,0,1,0,0:1.4 +21 16355018 STR_869910 GGTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTA GTTTTTTTTTTTGTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTTA,GGTTTTTTTTTTTGTTTTTTTTTA,GTTTTTTTGTTTTGTTTTTTTTTA,GTTTTTTTTTTGTTTTTTTTTTTA,GTTTTTTTTTTTGTTTTTTTTTTA,GTTTTTTTTTTTTGTTTTTTTTTA,GTTTTTTTTTTTTGTTTTTTTTTT,GTTTTTTTTTTTTGTTTTTTTTTTA,GTTTTTTTTTTTTTGTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTA,GGGTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTA,GGGTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTT,GGTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTT,GGTTTTTTTTTGGTTTTTTTTTGTTTTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTT,GGTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTA,GGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTA,GGTTTTTTTTTGTTTTTTTTTTTTGTTTTTTTTTTTA,GGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTA . PASS DR2=0,0.97,0,0,0,0,1,0,0,0,0,0.97,0,1,0,0,0,0,0,0,0,0,0;AF=0,0.0692,0,0,0,0,0.17,0,0,0,0,0.1005,0,0.3102,0,0,0,0,0,0,0,0,0;END=16355052;IMP;START=16355020;PERIOD=1;DSLEN=20.0,34.0 GT:DS:TRDS 0|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|12:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:1.78571 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:1.78571 0|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 12|0:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:1.78571 0|12:0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:1.78571 14|2:0,0.97,0,0,0,0,0,0,0,0,0,0.03,0,1,0,0,0,0,0,0,0,0,0:0.928571 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0:1 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 14|7:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|2:0,0.9,0,0,0,0,0,0,0,0,0,0.1,0,0,0,0,0,0,0,0,0,0,0:1 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 14|7:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 7|2:0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.142857 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 0|14:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 7|12:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.928571 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.71429 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 0|2:0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.71429 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 7|12:0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0:0.928571 2|14:0,0.97,0,0,0,0,0,0,0,0,0,0.03,0,1,0,0,0,0,0,0,0,0,0:0.928571 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 7|2:0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.142857 14|12:0,0.02,0,0,0,0,0,0,0,0,0,0.95,0,1,0,0,0,0,0,0,0,0,0:1.71429 14|14:0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0:1.71429 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1 14|12:0,0.04,0,0,0,0,0,0,0,0,0,0.96,0,1,0,0,0,0,0,0,0,0,0:1.71429 12|14:0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0:1.71429 14|0:0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:1.78571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.85714 14|12:0,0.02,0,0,0,0,0,0,0,0,0,0.98,0,1,0,0,0,0,0,0,0,0,0:1.71429 7|14:0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0:0.928571 +21 16356689 STR_869912 TTTTTTTTTTTTTTTC TTTTTTTTTTTTTTC,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTC,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTC . PASS DR2=0,0,1,0,0;AF=0,0,0.17,0,0;END=16356703;IMP;START=16356689;PERIOD=1;DSLEN=14.0,17.0 GT:DS:TRDS 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|3:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|3:0,0,1,0,0:1 3|0:0,0,1,0,0:1 0|3:0,0,1,0,0:1 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|3:0,0,1,0,0:1 3|0:0,0,1,0,0:1 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|3:0,0,1,0,0:1 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 0|0:0,0,0,0,0:0.666667 3|0:0,0,1,0,0:1 +21 16368079 STR_869919 TGTGTGTGCGTGTGTGTGTGTGTGTGTGTGT TGTGTGTGCGTGTGTGTGTGT,TGTGTGTGCGTGTGTGTGTGTGTGTGT,TGTGTGTGCGTGTGTGTGTGTGTGTGTGT,TGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0.99,0,0;AF=0,0,0,0.297,0,0;END=16368109;IMP;START=16368079;PERIOD=2;DSLEN=10.5,17.5 GT:DS:TRDS 0|4:0,0,0,0.99,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 4|0:0,0,0,0.99,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,0.99,0,0:1.57143 4|0:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 4|0:0,0,0,1,0,0:1.57143 4|0:0,0,0,1,0,0:1.57143 4|0:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 4|4:0,0,0,2,0,0:1.71429 4|0:0,0,0,0.99,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 4|0:0,0,0,1,0,0:1.57143 4|4:0,0,0,2,0,0:1.71429 4|0:0,0,0,1,0,0:1.57143 0|4:0,0,0,0.8,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,1,0,0:1.57143 4|0:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 4|4:0,0,0,2,0,0:1.71429 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 4|0:0,0,0,0.99,0,0:1.57143 4|4:0,0,0,2,0,0:1.71429 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 4|0:0,0,0,1,0,0:1.57143 0|4:0,0,0,1,0,0:1.57143 4|0:0,0,0,1,0,0:1.57143 0|0:0,0,0,0,0,0:1.42857 0|0:0,0,0,0,0,0:1.42857 0|4:0,0,0,0.95,0,0:1.57143 +21 16387149 STR_869925 AAAAAAAAAAAAAA AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA . PASS DR2=0,0.99,0,0;AF=0,0.4115,0,0;END=16387162;IMP;START=16387149;PERIOD=1;DSLEN=12.0,17.0 GT:DS:TRDS 0|2:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|0:0,0,0,0:0.8 2|0:0,1,0,0:0.6 0|2:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|2:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0.13,0,0:0.8 0|2:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|0:0,0,0,0:0.8 2|0:0,1,0,0:0.6 2|0:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|2:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|2:0,1,0,0:0.6 0|2:0,1,0,0:0.6 2|0:0,1.02,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|2:0,1,0,0:0.6 0|0:0,0,0,0:0.8 2|0:0,1,0,0:0.6 2|2:0,2,0,0:0.4 2|0:0,1,0,0:0.6 0|2:0,1,0,0:0.6 0|2:0,1,0,0:0.6 0|2:0,1.03,0,0:0.6 2|0:0,1,0,0:0.6 0|0:0,0,0,0:0.8 0|0:0,0,0,0:0.8 2|2:0,2,0,0:0.4 0|0:0,0,0,0:0.8 2|0:0,0.98,0,0:0.6 2|0:0,1,0,0:0.6 2|2:0,2,0,0:0.4 0|0:0,0,0,0:0.8 0|0:0,0,0,0:0.8 2|0:0,1,0,0:0.6 2|2:0,2,0,0:0.4 2|2:0,2,0,0:0.4 2|0:0,1,0,0:0.6 2|0:0,1,0,0:0.6 2|0:0,1,0,0:0.6 0|2:0,1,0,0:0.6 +21 16396889 STR_869932 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGT . PASS DR2=0,0.46,0,0,0.41,0,0.97,0.99,0,0,0;AF=0,0.0367,0,0,0.0545,0,0.0207,0.1293,0,0,0;END=16396932;IMP;START=16396889;PERIOD=2;DSLEN=19.0,29.0 GT:DS:TRDS 0|0:0,0,0,0,0.13,0,0,0,0,0,0:0.6 8|7:0,0,0,0,0,0,1,1,0,0,0:1.1 0|0:0,0,0,0,0.04,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0.03,0,0,0,0,0,0:0.6 8|0:0,0,0,0,0,0,0,1,0,0,0:0.9 0|0:0,0,0,0,0.1,0,0,0,0,0,0:0.6 0|0:0,0.21,0,0,0.44,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0.01,0,0,1,0,0,0:0.9 0|8:0,0,0,0,0,0,0,1,0,0,0:0.9 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|5:0,0,0,0,1,0,0,0,0,0,0:0.7 0|8:0,0,0,0,0.04,0,0,1,0,0,0:0.9 0|0:0,0,0,0,0.25,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0.01,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0,0,0.05,0.95,0,0,0:0.9 0|0:0,0.06,0,0,0,0,0,0,0,0,0:0.6 8|5:0,0,0,0,0.6,0,0,1,0,0,0:1 0|0:0,0.52,0,0,0.39,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0,0,0,1,0,0,0:0.9 0|0:0,0.38,0,0,0.24,0,0,0,0,0,0:0.6 0|0:0,0.03,0,0,0.02,0,0,0,0,0,0:0.6 0|0:0,0.06,0,0,0.7,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0,0,0.01,0.99,0,0,0:0.9 0|0:0,0,0,0,0.17,0,0,0,0,0,0:0.6 2|0:0,0.65,0,0,0,0,0,0,0,0,0:0.4 0|0:0,0,0,0,0.47,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0,0,0,1,0,0,0:0.9 7|0:0,0,0,0,0,0,1,0,0,0,0:0.8 0|0:0,0.47,0,0,0,0,0,0,0,0,0:0.6 0|0:0,0.01,0,0,0.12,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0.07,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0.25,0,0,0,0,0,0:0.6 0|0:0,0.08,0,0,0,0,0,0,0,0,0:0.6 0|0:0,0.46,0,0,0.01,0,0,0,0,0,0:0.6 0|2:0,0.74,0,0,0,0,0,0,0,0,0:0.4 0|0:0,0,0,0,0.11,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0.07,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 0|8:0,0,0,0,0,0,0,1,0,0,0:0.9 8|0:0,0,0,0,0,0,0,1,0,0,0:0.9 0|0:0,0,0,0,0.01,0,0,0,0,0,0:0.6 8|0:0,0.01,0,0,0.01,0,0,1,0,0,0:0.9 0|0:0,0,0,0,0.18,0,0,0,0,0,0:0.6 0|0:0,0,0,0,0,0,0,0,0,0,0:0.6 +21 16402147 STR_869934 AAATAAATAAATAAATAAATAATAAA AAATAAATAAATAAATAATAAA . PASS DR2=0.98;AF=0.6376;END=16402172;IMP;START=16402147;PERIOD=4;DSLEN=5.5,6.5 GT:DS:TRDS 0|1:1:1 1|1:2:0 0|0:0:2 0|1:1:1 1|0:1:1 0|1:1:1 0|0:0:2 0|1:1:1 1|1:2:0 1|1:1.62:0 1|1:2:0 1|1:2:0 1|0:1:1 0|1:1:1 1|0:1:1 1|1:1.97:0 1|1:2:0 1|1:2:0 1|1:2:0 1|0:1:1 0|1:1.01:1 1|1:2:0 1|0:1:1 1|0:1:1 0|0:0.02:2 1|1:2:0 0|1:1:1 1|0:1:1 1|1:2:0 1|0:1:1 0|1:1.2:1 1|1:2:0 1|1:2:0 1|1:2:0 1|0:0.94:1 1|0:1:1 1|1:2:0 0|0:0:2 1|0:1:1 1|0:1:1 1|1:2:0 0|0:0:2 0|0:0:2 1|0:1:1 1|1:2:0 1|1:2:0 1|0:1:1 1|0:1:1 1|0:1:1 1|1:2:0 +21 16404819 STR_869935 AAAAAAAAAAA AAAAAAAAAAAA . PASS DR2=1;AF=0.06;END=16404829;IMP;START=16404819;PERIOD=1;DSLEN=11.0,12.0 GT:DS:TRDS 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 1|0:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 +21 16405543 STR_869936 CTCAAAAAAAAAAAAAAAAAAAT CTCAAAAAAAAAAAAAAAAAT,CTAAAAAAAAAAAAAAAAAAAT,CTCAAAAAAAAAAAAAAAAAAT,CAAAAAAAAAAAAAAAAAAAAAT,CACAAAAAAAAAAAAAAAAAAAT,CTAAAAAAAAAAAAAAAAAAAAT,CTCAAAAAAAAAAAAAAAAAAAA,CTCAAAAAAAAAAAAAAAAGAAT,CAAAAAAAAAAAAAAAAAAAAAAT,CTAAAAAAAAAAAAAAAAAAAAAT,CTCAAAAAAAAAAAAAAAAAAAAT,CTAAAAAAAAAAAAAAAAAAAAAAT,CTCAAAAAAAAAAAAAAAAAAAAAT . PASS DR2=0,0.01,0.99,0,0,0.55,0,0,0,0,0.97,0,0;AF=0,0.0002,0.3634,0,0,0.0188,0,0,0,0,0.166,0,0;END=16405564;IMP;START=16405546;PERIOD=1;DSLEN=17.0,21.0 GT:DS:TRDS 3|0:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0,0,0,0.17,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 3|6:0,0,1,0,0,0.55,0,0,0,0,0,0,0:0.75 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 3|0:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 3|11:0,0,0.38,0,0,0.03,0,0,0,0,1.26,0,0:1 11|0:0,0,0,0,0,0.06,0,0,0,0,1,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0,0.17,0,0:1 11|3:0,0,1,0,0,0,0,0,0,0,1,0,0:1 3|11:0,0,1,0,0,0,0,0,0,0,1,0,0:1 0|3:0,0,1,0,0,0.24,0,0,0,0,0,0,0:0.75 6|0:0,0,0,0,0,0.81,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|11:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 0|0:0,0,0,0,0,0.04,0,0,0,0,0,0,0:1 0|3:0,0.01,0.99,0,0,0,0,0,0,0,0,0,0:0.75 3|0:0,0,0.99,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|3:0,0.01,0.99,0,0,0.05,0,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 3|11:0,0,1,0,0,0,0,0,0,0,1,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 3|11:0,0,0.98,0,0,0.01,0,0,0,0,1,0,0:1 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 11|3:0,0,1,0,0,0,0,0,0,0,1,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|3:0,0,1,0,0,0,0,0,0,0,1,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0,0,0.02,0,0,0,0,0,0,0:1 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 3|3:0,0,2,0,0,0,0,0,0,0,0,0,0:0.5 11|3:0,0,1,0,0,0,0,0,0,0,1,0,0:1 0|0:0,0,0,0,0,0.07,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 0|3:0,0,1,0,0,0,0,0,0,0,0,0,0:0.75 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0:1.25 +21 16407878 STR_869938 TTTTTTTTTTTTTTTTTTGA TTTTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTTTGT,TTTTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTTGA,TTTTTTTTTTTTTTTTTTTTA,TTTTTTTTTTTTTTTTTTTTGA . PASS DR2=0.02,0,0.49,0.99,0,0;AF=0.0004,0,0.0369,0.2243,0,0;END=16407895;IMP;START=16407878;PERIOD=1;DSLEN=17.0,20.0 GT:DS:TRDS 0|0:0,0,0,0,0,0:0.666667 0|4:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.666667 0|4:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0.14,0,0,0:0.666667 0|0:0,0,0.01,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|4:0,0,0,1,0,0:1 0|4:0.03,0,0,1.43,0,0:1 4|0:0,0,0,1,0,0:1 0|4:0,0,0,1,0,0:1 4|0:0,0,0,1,0,0:1 0|4:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|4:0,0,0.34,1,0,0:1 4|4:0,0,0,2,0,0:1.33333 4|0:0,0,0,1,0,0:1 0|0:0,0,0.06,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 4|0:0,0,0,1,0,0:1 0|0:0.01,0,0.01,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 4|0:0,0,0,1,0,0:1 0|4:0,0,0,1,0,0:1 0|0:0,0,0.01,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|4:0.01,0,0.46,1,0,0:1 4|0:0,0,0,1,0,0:1 4|0:0,0,0,1,0,0:1 0|0:0,0,0.09,0,0,0:0.666667 0|3:0,0,0.9,0,0,0:0.666667 4|0:0,0,0.37,1,0,0:1 0|0:0,0,0.1,0,0,0:0.666667 0|0:0,0,0.03,0,0,0:0.666667 4|0:0,0,0.01,1,0,0:1 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0.34,0,0,0:0.666667 0|3:0,0,0.65,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 4|0:0,0,0,1,0,0:1 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0.16,0,0,0:0.666667 0|0:0,0,0,0,0,0:0.666667 0|0:0,0,0.01,0,0,0:0.666667 4|0:0,0,0,1,0,0:1 +21 16421289 STR_869941 ACACACACACACGT ACACACACACAC,ACACACACACACAT,ATACACACACACGT . PASS DR2=0.98,0,0;AF=0.0612,0,0;END=16421300;IMP;START=16421289;PERIOD=2;DSLEN=5.0,6.0 GT:DS:TRDS 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|1:1,0,0:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0.12,0,0:2 0|0:0,0,0:2 0|1:1,0,0:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|1:1,0,0:1 1|0:1,0,0:1 1|0:1,0,0:1 0|0:0,0,0:2 0|0:0,0,0:2 1|0:1,0,0:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 +21 16423594 STR_869943 TGTGTGTGTGTGCGCGTGTGTGTGT TGTGTGTGTGCGCGCGTGTGTGTGT,TGTGTGTGTGTGCGCGTGTGTGTGCGCGTGTGTGTGT . PASS DR2=0,0.98;AF=0,0.1651;END=16423618;IMP;START=16423594;PERIOD=2;DSLEN=12.5,18.5 GT:DS:TRDS 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|2:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 2|2:0,1.51:2 2|0:0,1:1 0|2:0,1:1 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|2:0,1:1 2|0:0,1:1 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|2:0,1:1 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 2|0:0,1:1 +21 16442627 STR_869947 ACACACACACACACACACACACACACACA ACACACACACACACACACACG,ACACACACACACACACACACACA,ACACACACACACACACACACACG,ACACACACACACACACACACACACA,ACACACACACACACACACACACACG,ACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACG,ACACACACACACACACACACACACACACACACA . PASS DR2=0.93,0,0.84,0.63,0.53,0,0.9,0,0;AF=0.0107,0,0.2708,0.0279,0.0379,0,0.1242,0,0;END=16442655;IMP;START=16442627;PERIOD=2;DSLEN=10.5,16.5 GT:DS:TRDS 3|0:0,0,1,0.07,0.01,0,0,0,0:0.833333 7|0:0,0,0.02,0,0,0,1,0,0:1.5 7|5:0,0,0.04,0,0.96,0,1,0,0:1.16667 3|3:0,0,2,0,0,0,0,0,0:0.333333 0|0:0,0,0.2,0.01,0,0,0.19,0,0:1.33333 0|0:0,0,0,0.05,0,0,0,0,0:1.33333 5|3:0,0,1.28,0.01,0.71,0,0.01,0,0:0.5 0|7:0,0,0,0,0,0,1,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|3:0,0,1.17,0.02,0.08,0,0.01,0,0:0.833333 7|5:0,0,0.39,0,0.61,0,1,0,0:1.16667 0|3:0,0,0.84,0.07,0.15,0,0.01,0,0:0.833333 0|3:0,0,1,0,0,0,0,0,0:0.833333 0|0:0,0,0.02,0,0,0,0,0,0:1.33333 0|0:0,0,0.23,0.05,0,0,0.35,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0.01,0.01,0,0,0,0,0:1.33333 3|3:0,0,1.99,0,0,0,0,0,0:0.333333 3|0:0.01,0,0.42,0,0,0,0.21,0,0:0.833333 7|3:0,0,1.04,0,0,0,0.96,0,0:1 3|0:0,0,0.97,0,0.03,0,0,0,0:0.833333 0|3:0,0,0.97,0,0,0,0.03,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|3:0,0,0.89,0,0.11,0,0,0,0:0.833333 3|0:0.01,0,0.71,0,0.28,0,0,0,0:0.833333 3|3:0,0,1.98,0,0.02,0,0,0,0:0.333333 0|7:0.01,0,0.49,0,0.04,0,0.93,0,0:1.5 0|0:0,0,0,0.04,0,0,0,0,0:1.33333 0|3:0.02,0,0.92,0,0.06,0,0,0,0:0.833333 0|0:0,0,0.02,0,0,0,0,0,0:1.33333 3|7:0,0,0.98,0,0,0,1.02,0,0:1 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0.08,0,0,0,0,0:1.33333 0|0:0,0,0,0.01,0,0,0,0,0:1.33333 3|0:0,0,0.98,0,0,0,0.02,0,0:0.833333 0|0:0,0,0,0.12,0,0,0,0,0:1.33333 4|3:0,0,1,0.84,0,0,0,0,0:0.5 3|0:0,0,0.88,0,0.12,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0:1.33333 0|0:0,0,0,0.26,0,0,0,0,0:1.33333 7|1:0.99,0,0.18,0.02,0.01,0,0.6,0,0:0.833333 3|0:0,0,1,0,0,0,0,0,0:0.833333 3|4:0,0,0.98,1,0.02,0,0,0,0:0.5 7|3:0.02,0,0.96,0,0.01,0,1.01,0,0:1 7|7:0,0,0,0,0,0,2,0,0:1.66667 0|0:0,0,0,0.16,0,0,0,0,0:1.33333 7|0:0,0,0,0,0,0,1,0,0:1.5 3|5:0,0,1.44,0,0.56,0,0,0,0:0.5 0|0:0,0,0.08,0,0,0,0.07,0,0:1.33333 +21 16445270 STR_869948 TGTGTGTGTGTGTGTGTGTGTGTGTGTT TGTGTGTTTTTT,TGTGTGTGTGTGTGTGTGTTTT,TGTGTGTGTGTGTGTGTTTTTT,TGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTT,TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT . PASS DR2=0,0,0.98,0,0.86,0,0.95,0,0.79,0;AF=0,0,0.3083,0,0.0454,0,0.1282,0,0.0424,0;END=16445296;IMP;START=16445270;PERIOD=2;DSLEN=5.5,15.5 GT:DS:TRDS 3|0:0,0,1,0,0,0,0,0,0,0:1.3 7|0:0,0,0,0,0,0,1,0,0,0:1.5 7|3:0,0,1,0,0,0,1,0,0,0:1.2 3|3:0,0,2,0,0,0,0,0,0,0:1 0|9:0,0,0,0,0,0,0,0,0.62,0:1.7 0|0:0,0,0,0,0,0,0,0,0,0:1.6 3|3:0,0,2,0,0,0,0,0,0,0:1 0|7:0,0,0,0,0,0,1,0,0,0:1.5 0|9:0,0,0,0,0,0,0,0,1.01,0:1.7 0|3:0,0,1,0,0,0,0,0,0.06,0:1.3 7|3:0,0,1,0,0,0,1,0,0,0:1.2 0|3:0,0,1,0,0.03,0,0,0,0,0:1.3 9|3:0,0,1,0,0,0,0,0,1,0:1.4 0|0:0,0,0,0,0,0,0,0,0,0:1.6 0|5:0,0,0.02,0,0.65,0,0.33,0,0,0:1.4 0|0:0,0,0.01,0,0,0,0.03,0,0.11,0:1.6 0|0:0,0,0,0,0,0,0,0,0.01,0:1.6 3|3:0,0,2,0,0,0,0,0,0,0:1 7|0:0,0,0.18,0,0.15,0,0.31,0,0.21,0:1.5 7|3:0,0,1,0,0,0,1,0,0,0:1.2 3|0:0,0,1,0,0,0,0,0,0,0:1.3 0|3:0,0,1,0,0,0,0,0,0,0:1.3 0|0:0,0,0,0,0,0,0,0,0.02,0:1.6 5|0:0,0,0,0,1,0,0,0,0,0:1.4 0|3:0,0,1,0,0,0,0,0,0,0:1.3 3|0:0,0,1,0,0,0,0,0,0,0:1.3 3|3:0,0,2,0,0,0,0,0,0,0:1 3|7:0,0,0.62,0,0,0,1,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0.01,0:1.6 5|3:0,0,1,0,1,0,0,0,0,0:1.1 0|0:0,0,0,0,0,0,0,0,0,0:1.6 3|7:0,0,0.99,0,0,0,1.01,0,0,0:1.2 9|5:0,0,0,0,1,0,0,0,1,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0:1.6 0|0:0,0,0,0,0,0,0,0,0,0:1.6 3|0:0,0,1,0,0,0,0,0,0,0:1.3 0|0:0,0,0,0,0,0,0,0,0.01,0:1.6 0|3:0,0,1,0,0,0,0,0,0,0:1.3 3|0:0,0,1,0,0,0,0,0,0,0:1.3 0|0:0,0,0,0,0,0,0,0,0,0:1.6 0|0:0,0,0,0,0,0,0,0,0.01,0:1.6 7|3:0,0,1,0,0,0,1,0,0,0:1.2 3|0:0,0,1,0,0,0,0,0,0,0:1.3 3|0:0,0,1,0,0,0,0,0,0,0:1.3 7|3:0,0,1,0,0,0,1,0,0,0:1.2 7|7:0,0,0,0,0,0,2,0,0,0:1.4 0|0:0,0,0,0,0,0,0,0,0,0:1.6 7|0:0,0,0,0,0,0,1,0,0,0:1.5 3|3:0,0,2,0,0,0,0,0,0,0:1 5|0:0,0,0.01,0,0.71,0,0.14,0,0.17,0:1.4 +21 16451185 STR_869951 ACACACACACACACACACACACA ACACACACACACACACACA,ACACACACACACACACACACA,ACATACACACACACACACACACA,ACACACACACACACACACACACACA,ACATACACACACACACACACACACA,ACACACACACACACACACACACACACA . PASS DR2=0.91,0.9,0.86,0.08,0,0.94;AF=0.1183,0.0093,0.0472,0.0009,0,0.0308;END=16451207;IMP;START=16451185;PERIOD=2;DSLEN=9.5,13.5 GT:DS:TRDS 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0,0,0:0.5 1|0:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0.09,0,0,0,0,0.01:1 0|0:0,0,0,0,0,0:1 0|0:0.09,0,0,0,0,0:1 0|1:1,0,0,0,0,0:0.5 0|6:0,0,0,0,0,1:1.5 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0,0,0:0.5 0|0:0,0,0.11,0,0,0:1 6|0:0,0,0,0,0,1:1.5 0|0:0.01,0,0,0,0,0:1 0|3:0.25,0,0.71,0,0,0:1 0|0:0,0,0,0,0,0.01:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0.21,0.01,0.1,0,0,0.1:1 1|0:0.98,0,0.01,0,0,0:0.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 3|0:0,0,0.99,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0.02,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|1:1,0,0,0,0,0:0.5 0|0:0,0,0,0,0,0:1 3|0:0,0,1,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 6|3:0.02,0,1,0,0,0.95:1.5 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0.01,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 0|0:0.01,0,0,0,0,0:1 1|2:1,0.91,0,0.08,0,0:0.25 0|0:0.01,0,0,0,0,0:1 0|0:0,0,0,0,0,0:1 1|0:1,0,0,0,0,0:0.5 1|1:2,0,0,0,0,0:0 0|0:0,0,0,0,0,0:1 1|0:0.91,0,0.04,0,0,0:0.5 0|0:0,0,0,0,0,0:1 3|0:0.2,0,0.76,0,0,0.01:1 +21 16456785 STR_869953 GGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GGGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0.57,0,0,0,0,0.58,0.04,0.84,0,0;AF=0.2449,0,0,0,0,0.7438,0.0022,0.0091,0,0;END=16456822;IMP;START=16456789;PERIOD=2;DSLEN=12.0,21.0 GT:DS:TRDS 6|6:0.17,0,0,0,0,1.83,0,0,0,0:1.11111 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0.21,0,0,0,0,1.79,0,0,0,0:1.11111 1|1:1.61,0,0,0,0,0.39,0,0,0,0:0 6|6:0.2,0,0,0,0,1.73,0.07,0,0,0:1.11111 1|6:0.56,0,0,0,0,1.44,0,0,0,0:0.555556 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0.35,0,0,0,0,1.64,0.02,0,0,0:1.11111 6|6:0.02,0,0,0,0,1.98,0,0,0,0:1.11111 6|6:0.02,0,0,0,0,1.98,0,0,0,0:1.11111 6|6:0.03,0,0,0,0,1.97,0,0,0,0:1.11111 6|1:1.37,0,0,0,0,0.63,0,0,0,0:0.555556 6|1:0.93,0,0,0,0,1.07,0,0,0,0:0.555556 6|1:0.97,0,0,0,0,1.03,0,0,0,0:0.555556 6|6:0.56,0,0,0,0,1.42,0.02,0,0,0:1.11111 1|6:1.17,0,0,0,0,0.83,0,0,0,0:0.555556 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0.17,0,0,0,0,1.82,0.01,0,0,0:1.11111 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0.04,0,0,0,0,1.96,0,0,0,0:1.11111 6|6:0.5,0,0,0,0,1.46,0,0.04,0,0:1.11111 6|6:0.49,0,0,0,0,1.51,0,0,0,0:1.11111 1|6:0.93,0,0,0,0,1.07,0,0,0,0:0.555556 6|1:1.3,0,0,0,0,0.67,0.03,0,0,0:0.555556 6|6:0.42,0,0,0,0,1.58,0,0,0,0:1.11111 6|6:0.26,0,0,0,0,1.74,0,0,0,0:1.11111 6|6:0.12,0,0,0,0,1.88,0,0,0,0:1.11111 6|6:0.01,0,0,0,0,1.99,0,0,0,0:1.11111 6|6:0.46,0,0,0,0,1.54,0,0,0,0:1.11111 6|1:0.87,0,0,0,0,1.1,0.03,0,0,0:0.555556 6|6:0.06,0,0,0,0,1.94,0,0,0,0:1.11111 6|6:0.04,0,0,0,0,1.96,0,0,0,0:1.11111 6|1:0.86,0,0,0,0,1.14,0,0,0,0:0.555556 6|6:0.13,0,0,0,0,1.87,0,0,0,0:1.11111 6|1:0.59,0,0,0,0,1.41,0,0,0,0:0.555556 6|6:0.55,0,0,0,0,1.43,0.01,0,0,0:1.11111 6|6:0.31,0,0,0,0,1.69,0,0,0,0:1.11111 6|1:0.85,0,0,0,0,1.15,0,0,0,0:0.555556 1|1:1.27,0,0,0,0,0.73,0,0,0,0:0 6|6:0.38,0,0,0,0,1.62,0,0,0,0:1.11111 6|6:0,0,0,0,0,2,0,0,0,0:1.11111 6|6:0.37,0,0,0,0,1.63,0,0,0,0:1.11111 6|6:0.28,0,0,0,0,1.72,0,0,0,0:1.11111 6|1:0.52,0,0,0,0,1.48,0,0,0,0:0.555556 1|6:1,0,0,0,0,1,0,0,0,0:0.555556 6|1:1,0,0,0,0,1,0,0,0,0:0.555556 6|1:1,0,0,0,0,1,0,0,0,0:0.555556 8|6:0.2,0,0,0,0,0.93,0,0.88,0,0:1.33333 1|1:1.32,0,0,0,0,0.65,0.03,0,0,0:0 +21 16459590 STR_869954 GAGGTAAAAAAAAAAAAAAAAAAAAAAAGCTAT GAGGTAAAAAAAAAAAAAAAAAAAGCTAT,GAAGAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAAGAAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGAAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAAACTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAAGCTAA,GGGGTAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAAAGCTAC,GAGGTAAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGAAAAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAAAAGCTAT,GAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAGCTAT . PASS DR2=0,0,0,0.89,0,0,0.03,0,0,0,0,0,0,0,0,0,0;AF=0,0,0,0.2212,0,0,0.0003,0,0,0,0,0,0,0,0,0,0;END=16459617;IMP;START=16459595;PERIOD=1;DSLEN=19.0,26.0 GT:DS:TRDS 0|0:0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,1.02,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|0:0,0,0,0.07,0,0,0.03,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.28,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|4:0,0,0,1.98,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 0|0:0,0,0,0.36,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|0:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,1.01,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,0.52,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,1.01,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|0:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.07,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.42,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,0.73,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 4|4:0,0,0,1.99,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 0|0:0,0,0,0.12,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,0.99,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|0:0,0,0,0.33,0,0,0,0,0,0,0,0,0,0,0,0,0:1.14286 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 0|4:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 4|0:0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0:0.714286 4|4:0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0:0.285714 +21 16460140 STR_869955 TTTTTTTTTTTTTA TTTTTTTTTTTTA,TTTTTTTTTTTTTTA,TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTA . PASS DR2=0,0.9,0,0;AF=0,0.2153,0,0;END=16460152;IMP;START=16460140;PERIOD=1;DSLEN=12.0,15.0 GT:DS:TRDS 0|0:0,0.02,0,0:0.666667 0|0:0,0,0,0:0.666667 2|0:0,0.99,0,0:1 0|2:0,1.02,0,0:1 0|0:0,0.07,0,0:0.666667 0|0:0,0.28,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.01,0,0:0.666667 0|0:0,0.02,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.04,0,0:0.666667 2|2:0,1.98,0,0:1.33333 0|0:0,0.36,0,0:0.666667 0|2:0,1,0,0:1 0|0:0,0.01,0,0:0.666667 2|0:0,1,0,0:1 0|0:0,0,0,0:0.666667 0|0:0,0.02,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 2|0:0,1.01,0,0:1 0|0:0,0.01,0,0:0.666667 2|0:0,1,0,0:1 0|2:0,1.01,0,0:1 0|0:0,0.01,0,0:0.666667 0|0:0,0.01,0,0:0.666667 0|0:0,0.07,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.01,0,0:0.666667 0|0:0,0.05,0,0:0.666667 0|0:0,0.03,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.42,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.01,0,0:0.666667 0|0:0,0,0,0:0.666667 2|0:0,0.73,0,0:1 0|2:0,1,0,0:1 2|2:0,1.99,0,0:1.33333 0|0:0,0,0,0:0.666667 0|0:0,0,0,0:0.666667 0|0:0,0.05,0,0:0.666667 2|0:0,0.99,0,0:1 0|0:0,0.33,0,0:0.666667 2|0:0,1,0,0:1 0|2:0,1,0,0:1 0|2:0,1,0,0:1 2|0:0,1,0,0:1 2|2:0,2,0,0:1.33333 +21 16462491 STR_869956 TATATATATATATATATATAT TATATATATATAT,TATATATATATATATATAT,TATATACATATATATATATAT,TATATATATATATATATACAT,TATATATATATATACATATATAT,TATATATATATATATATATATAT,TATATATATATATATATATATATAT,TATATATATATATATATATATATATAT,TATATATATATATATATATATATATATAT,TATATATATATATATATATATATATATATAT,TATATATATATATATATATATATATATATATAT,TATATATATATATATATATGTATATATATATAT,TATATATATATATATATATATATATATATATATAT,TATATATATATATATATATATATATATATATATATAT . PASS DR2=0,0.01,0,0,0,0,0.81,0.86,0.76,0,0,0,0,0;AF=0,0.0001,0,0,0,0,0.092,0.1198,0.0092,0,0,0,0,0;END=16462511;IMP;START=16462491;PERIOD=2;DSLEN=6.5,18.5 GT:DS:TRDS 0|9:0,0,0,0,0,0,0.05,0.12,0.83,0,0,0,0,0:1 0|8:0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0:0.916667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0.01,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|7:0,0,0,0,0,0,1,0.01,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 7|0:0,0,0,0,0,0,1.09,0,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0.37,0.02,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|8:0,0,0,0,0,0,0,0.91,0,0,0,0,0,0:0.916667 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.916667 0|7:0,0,0,0,0,0,0.61,0.39,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|7:0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.833333 8|8:0,0,0,0,0,0,0.38,1.6,0.01,0,0,0,0,0:1.16667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 8|0:0,0,0,0,0,0,0.12,0.88,0,0,0,0,0,0:0.916667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0,0:0.916667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 8|0:0,0,0,0,0,0,0.22,0.77,0,0,0,0,0,0:0.916667 8|0:0,0,0,0,0,0,0,0.96,0,0,0,0,0,0:0.916667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|8:0,0,0,0,0,0,0,0.99,0.01,0,0,0,0,0:0.916667 7|0:0,0,0,0,0,0,0.72,0.25,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 7|0:0,0,0,0,0,0,0.95,0.05,0,0,0,0,0,0:0.833333 8|8:0,0,0,0,0,0,0,1.93,0.07,0,0,0,0,0:1.16667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|7:0,0,0,0,0,0,0.99,0.01,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|7:0,0,0,0,0,0,0.69,0.08,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 7|0:0,0,0,0,0,0,1,0,0,0,0,0,0,0:0.833333 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.666667 +21 16470404 STR_869958 TTTTTGTTTTTTGTTTTTTTTTTT TTTTTGTTTTTTGTTTTTTTTTTTT,TTTTTGTTTTTTGTTTTTTTTTTTTT . PASS DR2=0.98,0;AF=0.2246,0;END=16470427;IMP;START=16470404;PERIOD=1;DSLEN=24.0,26.0 GT:DS:TRDS 0|1:1,0:0.5 0|1:1,0:0.5 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|1:1,0:0.5 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 1|0:1,0:0.5 0|0:0,0:0 0|0:0.48,0:0 0|0:0,0:0 0|1:1,0:0.5 1|0:1,0:0.5 0|1:1,0:0.5 0|0:0,0:0 0|1:1,0:0.5 1|1:2,0:1 0|0:0,0:0 1|0:1,0:0.5 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 1|0:1,0:0.5 0|0:0,0:0 1|0:1,0:0.5 1|0:1,0:0.5 0|0:0,0:0 0|1:1,0:0.5 1|0:1,0:0.5 0|0:0,0:0 0|0:0,0:0 1|0:1,0:0.5 1|1:2,0:1 0|0:0,0:0 0|0:0,0:0 0|1:1,0:0.5 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 0|1:0.98,0:0.5 0|0:0,0:0 1|0:1,0:0.5 0|0:0,0:0 0|0:0,0:0 0|0:0,0:0 +21 16471519 STR_869959 AAAAAGAAAAAAAAA AAAAAGAAAAAAAAAA . PASS DR2=0.98;AF=0.2246;END=16471533;IMP;START=16471519;PERIOD=1;DSLEN=15.0,16.0 GT:DS:TRDS 0|1:1:1 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 1|0:1:1 0|0:0:0 0|0:0.48:0 0|0:0:0 0|1:1:1 1|0:1:1 0|1:1:1 0|0:0:0 0|1:1:1 1|1:2:2 0|0:0:0 1|0:1:1 0|0:0:0 0|0:0:0 0|0:0:0 1|0:1:1 0|0:0:0 1|0:1:1 1|0:1:1 0|0:0:0 0|1:1:1 1|0:1:1 0|0:0:0 0|0:0:0 1|0:1:1 1|1:2:2 0|0:0:0 0|0:0:0 0|1:1:1 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|0:0:0 0|1:0.98:1 0|0:0:0 1|0:1:1 0|0:0:0 0|0:0:0 0|0:0:0 +21 16472624 STR_869960 CTACTACTACTACTACTACTACTACTACTAC CTACTACTACTACTACTACTAC,CTACTACTACTACTACTACTACTAC,CTACTACTACTACTACTACTACTACTAC,CTACTACTACTACTACTACTACTACTACTACTAC,CTACTACTACTATTACTACTACTACTACTACTAC,CTACTACTACTACTACTACTACTACTACTACTACTAC . PASS DR2=0,0.99,0,0,0,0;AF=0,0.435,0,0,0,0;END=16472654;IMP;START=16472624;PERIOD=3;DSLEN=7.333333333333333,12.333333333333334 GT:DS:TRDS 2|2:0,1.95,0,0,0,0:0.4 0|2:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 0|2:0,1,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 0|0:0,0.01,0,0,0,0:1.2 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 2|0:0,0.57,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|2:0,0.99,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|2:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 0|2:0,1,0,0,0,0:0.8 2|0:0,0.99,0,0,0,0:0.8 0|0:0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0:1.2 2|2:0,2,0,0,0,0:0.4 0|2:0,1,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 0|0:0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0:1.2 2|0:0,1,0,0,0,0:0.8 0|2:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 2|2:0,1.99,0,0,0,0:0.4 0|2:0,1,0,0,0,0:0.8 2|0:0,1,0,0,0,0:0.8 2|2:0,2,0,0,0,0:0.4 +21 16474704 STR_869961 CAAAAACAAAAACAAAAACAAAAACAAAAAAAACC CAAAAACAAAAACAAAAACAAAAACAAAAAAAACCCATAACACTTAT,CAAAAACAAAAATAAAAACAAAAACAAAAAAAACCCATAACACTTAT,CAAAAATAAAAACAAAAACAAAAACAAAAAAAACCCATAACACTTAT . PASS DR2=0.99,0,0;AF=0.4362,0,0;END=16474733;IMP;START=16474704;PERIOD=6;DSLEN=5.0,7.0 GT:DS:TRDS 1|1:2,0,0:2 0|1:1,0,0:1 1|0:1,0,0:1 0|1:1,0,0:1 0|0:0,0,0:0 0|1:1,0,0:1 0|0:0,0,0:0 0|0:0.02,0,0:0 0|0:0,0,0:0 1|0:1,0,0:1 0|0:0,0,0:0 1|0:0.62,0,0:1 1|1:2,0,0:2 0|1:1,0,0:1 1|1:2,0,0:2 0|1:1,0,0:1 1|0:1,0,0:1 0|1:1,0,0:1 1|1:2,0,0:2 0|0:0,0,0:0 1|0:1,0,0:1 1|0:1,0,0:1 0|0:0,0,0:0 1|0:1,0,0:1 1|1:2,0,0:2 0|0:0,0,0:0 1|0:1,0,0:1 1|0:1,0,0:1 0|0:0,0,0:0 0|1:1,0,0:1 1|0:1,0,0:1 0|0:0,0,0:0 0|0:0,0,0:0 1|0:1,0,0:1 1|1:2,0,0:2 0|0:0,0,0:0 0|0:0,0,0:0 1|1:2,0,0:2 0|1:1,0,0:1 1|1:2,0,0:2 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 1|0:1,0,0:1 0|1:1,0,0:1 1|0:1,0,0:1 1|1:1.98,0,0:2 0|1:1,0,0:1 1|0:1,0,0:1 1|1:2,0,0:2 +21 16479310 STR_869965 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAG,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA . PASS DR2=0,0,0,0.7,0.73,0.76,0,0,0.65,0.87,0.82,0.63,0,0,0,0;AF=0,0,0,0.0893,0.1921,0.2356,0,0,0.1883,0.0434,0.1081,0.0345,0,0,0,0;END=16479352;IMP;START=16479310;PERIOD=2;DSLEN=14.5,29.5 GT:DS:TRDS 10|4:0,0,0,0.53,0.47,0,0,0,0,0.8,0.2,0,0,0,0,0:0.866667 5|5:0,0,0,0.39,1.29,0.08,0,0,0.06,0,0,0,0,0,0,0:0.666667 11|9:0,0,0,0,0,0,0,0,0.76,0,1,0,0,0,0,0:1.2 0|11:0,0,0,0,0,0,0,0,0.31,0,0.98,0,0,0,0,0:1.13333 6|0:0,0,0,0,0,0.83,0,0,0.42,0,0,0,0,0,0,0:0.866667 9|4:0,0,0,1,0,0.09,0,0,0.76,0,0,0,0,0,0,0:0.8 9|0:0,0,0,0,0,0.01,0,0,1.07,0,0,0,0,0,0,0:1 5|0:0,0,0,0,1,0.01,0,0,0.25,0,0,0,0,0,0,0:0.8 6|6:0,0,0,0,0.08,1.88,0,0,0,0,0,0,0,0,0,0:0.8 9|6:0,0,0,0,0.05,0.93,0,0,1.02,0,0,0,0,0,0,0:0.933333 9|9:0,0,0,0,0,0.03,0,0,1.65,0,0,0,0,0,0,0:1.06667 6|5:0,0,0,0.39,0.99,0.42,0,0,0.05,0,0.03,0.02,0,0,0,0:0.733333 11|11:0,0,0,0,0,0,0,0,0.06,0,1.77,0.18,0,0,0,0:1.33333 0|5:0,0,0,0.05,0.95,0.3,0,0,0.29,0,0,0,0,0,0,0:0.8 5|11:0,0,0,0,1,0,0,0,0,0,0.55,0.45,0,0,0,0:1 6|5:0,0,0,0.19,0.84,0.96,0,0,0,0,0,0,0,0,0,0:0.733333 12|6:0,0,0,0,0.01,0.99,0,0,0,0.01,0,0.99,0,0,0,0:1.13333 5|4:0,0,0,1,0.99,0,0,0,0,0,0,0,0,0,0,0:0.6 5|4:0,0,0,1.01,0.99,0,0,0,0,0,0,0,0,0,0,0:0.6 5|0:0,0,0,0,0.48,0.46,0,0,0.36,0,0,0,0,0,0,0:0.8 5|6:0,0,0,0.01,1.1,0.89,0,0,0,0,0,0,0,0,0,0:0.733333 10|9:0,0,0,0,0,0.06,0,0,0.66,0.98,0,0.02,0,0,0,0:1.13333 9|6:0,0,0,0,0,1,0,0,0.93,0,0,0,0,0,0,0:0.933333 11|6:0,0,0,0,0.15,0.81,0,0,0.07,0.01,0.93,0,0,0,0,0:1.06667 5|11:0,0,0,0.16,0.84,0.33,0,0,0,0,0.66,0,0,0,0,0:1 9|0:0,0,0,0,0,0.05,0,0,1.13,0,0,0,0,0,0,0:1 5|9:0,0,0,0.21,0.78,0.05,0,0,0.74,0,0,0,0,0,0,0:0.866667 5|6:0,0,0,0,1,0.55,0,0,0.29,0,0,0,0,0,0,0:0.733333 6|5:0,0,0,0,0.86,1.1,0,0,0,0,0,0,0,0,0,0:0.733333 6|5:0,0,0,0.44,0.56,1,0,0,0,0,0,0,0,0,0,0:0.733333 5|6:0,0,0,0.25,0.75,0.89,0,0,0.07,0,0,0.01,0,0,0,0:0.733333 9|9:0,0,0,0,0,0.1,0,0,1.81,0,0,0,0,0,0,0:1.06667 6|6:0,0,0,0,0.17,1.2,0,0,0.24,0,0,0,0,0,0,0:0.8 5|6:0,0,0,0.46,0.53,1,0,0,0.01,0,0,0,0,0,0,0:0.733333 5|5:0,0,0,0.27,1.73,0,0,0,0,0,0,0,0,0,0,0:0.666667 9|9:0,0,0,0,0.06,0.01,0,0,1.35,0,0,0,0,0,0,0:1.06667 6|6:0,0,0,0,0.28,1.56,0,0,0.01,0,0,0,0,0,0,0:0.8 9|4:0,0,0,0.71,0.29,0,0,0,0.91,0.06,0.01,0.01,0,0,0,0:0.8 9|11:0,0,0,0,0,0.01,0,0,1.12,0,0.69,0,0,0,0,0:1.2 12|12:0,0,0,0,0,0,0,0,0,0,0.82,1.17,0,0,0,0:1.46667 6|6:0,0,0,0,0.02,1.97,0,0,0,0,0,0,0,0,0,0:0.8 0|6:0,0,0,0,0.05,0.87,0,0,0.24,0,0,0,0,0,0,0:0.866667 0|6:0,0,0,0,0.29,0.89,0,0,0,0,0,0,0,0,0,0:0.866667 11|9:0,0,0,0,0,0,0,0,0.87,0,1,0,0,0,0,0:1.2 5|4:0,0,0,0.89,0.61,0.46,0,0,0,0,0.01,0,0,0,0,0:0.6 12|6:0,0,0,0,0,1,0,0,0.01,0.43,0.01,0.55,0,0,0,0:1.13333 4|10:0,0,0,0.96,0,0.01,0,0,0,0.99,0,0.01,0,0,0,0:0.866667 9|10:0,0,0,0,0,0.02,0,0,0.55,1,0,0,0,0,0,0:1.13333 6|9:0,0,0,0,0,0.76,0,0,0.78,0.05,0.15,0.04,0,0,0,0:0.933333 11|11:0,0,0,0,0,0,0,0,0,0.01,1.99,0,0,0,0,0:1.33333 +21 16480490 STR_869966 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . PASS DR2=0,0,0,0.53,0.95,0.74,0,0;AF=0,0,0,0.0263,0.1955,0.0147,0,0;END=16480523;IMP;START=16480490;PERIOD=2;DSLEN=12.0,20.0 GT:DS:TRDS 5|0:0,0,0,0,1,0.01,0,0:1.125 0|0:0,0,0,0.03,0,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0:1.125 0|5:0,0,0,0,1,0,0,0:1.125 0|0:0,0,0,0.14,0,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0.03,0.02,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0.12,0,0,0,0:1.25 0|0:0,0,0,0.03,0.07,0.01,0,0:1.25 5|5:0,0,0,0.01,1.98,0,0,0:1 0|0:0,0,0,0.23,0,0.04,0,0:1.25 0|5:0,0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0.04,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0:1.125 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0.01,0,0,0,0:1.25 0|0:0,0,0,0,0,0.08,0,0:1.25 0|0:0,0,0,0,0,0.02,0,0:1.25 0|4:0,0,0,0.61,0.06,0,0,0:1 0|0:0,0,0,0.01,0,0.01,0,0:1.25 5|0:0,0,0,0,0.99,0,0,0:1.125 0|5:0,0,0,0,0.63,0,0,0:1.125 0|0:0,0,0,0.05,0,0,0,0:1.25 0|0:0,0,0,0.07,0.01,0.29,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0.01,0,0,0,0:1.25 0|0:0,0,0,0,0,0.01,0,0:1.25 0|0:0,0,0,0,0.08,0,0,0:1.25 4|0:0,0,0,0.96,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1.25 0|6:0,0,0,0.01,0,1,0,0:1.375 0|0:0,0,0,0,0,0.01,0,0:1.25 0|0:0,0,0,0.01,0,0,0,0:1.25 0|0:0,0,0,0,0.01,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0:1.125 0|5:0,0,0,0,1,0,0,0:1.125 5|5:0,0,0,0.23,1.64,0,0,0:1 0|0:0,0,0,0,0,0,0,0:1.25 0|0:0,0,0,0.04,0,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0:1.125 0|0:0,0,0,0.02,0.01,0,0,0:1.25 5|0:0,0,0,0,1,0,0,0:1.125 0|5:0,0,0,0,1.02,0,0,0:1.125 0|5:0,0,0,0.01,1,0,0,0:1.125 5|0:0,0,0,0,1,0,0,0:1.125 5|5:0,0,0,0,1.99,0,0,0:1 +21 16487449 STR_869969 ATATATATATATATTTATGTGTGTGTGTGTGTGTGTGT ATATATATATATATTTATGTGTGTGTGTGTGTGTGT,ATATAAATATATATTTATGTGTGTGTGTGTGTGTGTGT,ATATATATATATATATTTATGTGTGTGTGTGTGTGTGT,ATATATATATATATATATTTATGTGTGTGTGTGTGTGTGT,ATATATATATATATATTTATGTGTGTGTGTGTGTGTGTGT,ATATATATATATATTTATGTGTGTGTGTGTGTGTGTGTGT,ATATATATATATATATTTATGTGTGTGTGTGTGTGTGTGTGT,ATATATATATATATTTATGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0,0,0,0,0.89,0.8,0,0;AF=0,0,0,0,0.2362,0.2204,0,0;END=16487486;IMP;START=16487449;PERIOD=2;DSLEN=18.0,21.0 GT:DS:TRDS 6|5:0,0,0,0,1,1,0,0:1.33333 6|5:0,0,0,0,1.02,0.85,0,0:1.33333 5|0:0,0,0,0,0.98,0.02,0,0:1 0|0:0,0,0,0,0,0.02,0,0:0.666667 0|0:0,0,0,0,0,0.01,0,0:0.666667 0|6:0,0,0,0,0,1,0,0:1 0|0:0,0,0,0,0,0,0,0:0.666667 5|0:0,0,0,0,1,0,0,0:1 0|0:0,0,0,0,0,0.09,0,0:0.666667 6|0:0,0,0,0,0.13,1,0,0:1 0|0:0,0,0,0,0.22,0.14,0,0:0.666667 0|6:0,0,0,0,0.04,1.19,0,0:1 6|0:0,0,0,0,0.04,0.79,0,0:1 0|5:0,0,0,0,0.99,0.2,0,0:1 5|5:0,0,0,0,2,0,0,0:1.33333 0|0:0,0,0,0,0.04,0.07,0,0:0.666667 6|0:0,0,0,0,0,1.03,0,0:1 6|5:0,0,0,0,1,0.99,0,0:1.33333 5|5:0,0,0,0,1.21,0.42,0,0:1.33333 6|0:0,0,0,0,0,0.79,0,0:1 5|0:0,0,0,0,1,0.35,0,0:1 6|6:0,0,0,0,0.03,1.68,0,0:1.33333 0|0:0,0,0,0,0,0,0,0:0.666667 0|5:0,0,0,0,0.59,0.06,0,0:1 5|0:0,0,0,0,1,0.03,0,0:1 0|0:0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0.06,0.15,0,0:0.666667 5|0:0,0,0,0,0.99,0.01,0,0:1 0|6:0,0,0,0,0,0.96,0,0:1 0|5:0,0,0,0,1,0,0,0:1 5|0:0,0,0,0,0.82,0.18,0,0:1 6|0:0,0,0,0,0,1,0,0:1 0|0:0,0,0,0,0.02,0.33,0,0:0.666667 5|0:0,0,0,0,0.97,0.03,0,0:1 5|5:0,0,0,0,1.99,0,0,0:1.33333 0|0:0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0.13,0.1,0,0:0.666667 0|5:0,0,0,0,0.99,0.02,0,0:1 0|6:0,0,0,0,0,0.99,0,0:1 6|6:0,0,0,0,0,1.58,0,0:1.33333 0|0:0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0,0,0,0:0.666667 0|0:0,0,0,0,0.35,0.2,0,0:0.666667 5|0:0,0,0,0,0.97,0.03,0,0:1 0|5:0,0,0,0,1.02,0.14,0,0:1 5|0:0,0,0,0,1,0,0,0:1 6|6:0,0,0,0,0.01,1.56,0,0:1.33333 0|6:0,0,0,0,0.01,1,0,0:1 6|0:0,0,0,0,0.01,1.01,0,0:1 6|5:0,0,0,0,1,1,0,0:1.33333 +21 16488916 STR_869971 CTGTCTAAAAAAAAAAAAAA CTGTCTAAAAAAAAAAAA,CCGTCTAAAAAAAAAAAAA,CTGTCTAAAAAAAAAAAAA . PASS DR2=0,0,0.94;AF=0,0,0.3577;END=16488935;IMP;START=16488922;PERIOD=1;DSLEN=12.0,14.0 GT:DS:TRDS 3|0:0,0,1:1.5 0|0:0,0,0.01:2 3|0:0,0,0.97:1.5 0|0:0,0,0:2 0|0:0,0,0:2 0|3:0,0,1:1.5 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0.04:2 3|3:0,0,1.96:1 0|0:0,0,0:2 3|0:0,0,1:1.5 3|0:0,0,0.97:1.5 0|0:0,0,0.07:2 0|3:0,0,0.96:1.5 3|0:0,0,1:1.5 3|3:0,0,1.82:1 0|0:0,0,0:2 0|0:0,0,0:2 0|0:0,0,0:2 3|3:0,0,1.96:1 3|0:0,0,0.58:1.5 0|0:0,0,0:2 0|3:0,0,1:1.5 3|0:0,0,1:1.5 3|0:0,0,0.66:1.5 0|0:0,0,0.01:2 0|0:0,0,0.01:2 3|0:0,0,1:1.5 3|0:0,0,1:1.5 3|0:0,0,0.99:1.5 0|0:0,0,0:2 3|3:0,0,1.86:1 0|0:0,0,0:2 3|0:0,0,1:1.5 0|0:0,0,0:2 0|0:0,0,0.03:2 0|0:0,0,0:2 0|3:0,0,1:1.5 3|3:0,0,2:1 0|3:0,0,1:1.5 3|0:0,0,0.88:1.5 0|0:0,0,0.02:2 3|0:0,0,0.96:1.5 3|0:0,0,1.01:1.5 3|0:0,0,1:1.5 0|3:0,0,1.02:1.5 0|3:0,0,1:1.5 3|3:0,0,1.98:1 3|3:0,0,2:1 +21 16492571 STR_869974 ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCT,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCT,ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCC,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCT,ATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC,ATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCC . PASS DR2=0,0.03,0,0,0,0,0,0,0.95,0.5,0,0,0,0.42,0,0.81,0.45,0,0.75,0,0,0,0,0.27,0,0;AF=0,0.0008,0,0,0,0,0,0,0.019,0.0763,0,0,0,0.0143,0,0.1545,0.0112,0,0.066,0,0,0,0,0.0035,0,0;END=16492632;IMP;START=16492571;PERIOD=4;DSLEN=12.75,21.5 GT:DS:TRDS 0|0:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.32,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0:0.628571 0|10:0,0.03,0,0,0,0,0,0,0,0.58,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.742857 0|0:0,0,0,0,0,0,0,0,0,0.18,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|10:0,0,0,0,0,0,0,0,0,0.9,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.742857 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31,0,0:0.628571 10|0:0,0,0,0,0,0,0,0,0,0.56,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.742857 10|0:0,0,0,0,0,0,0,0,0,1.06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.742857 0|0:0,0,0,0,0,0,0,0,0,0.03,0,0,0,0,0,0,0,0,0.04,0,0,0,0,0,0,0:0.628571 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76,0,0,0.2,0,0,0,0,0,0,0:0.971429 0|10:0,0,0,0,0,0,0,0,0,0.83,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.742857 19|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99,0,0,0,0,0,0,0:1.08571 16|0:0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56,0,0,0.3,0,0,0,0,0,0,0:0.971429 0|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0.01,0,0.02,0.01,0,0.02,0,0,0,0,0,0,0:0.628571 0|16:0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0.96,0,0,0,0,0,0,0,0,0,0:0.971429 19|0:0,0,0,0,0,0,0,0,0,0.08,0,0,0,0,0,0.09,0,0,0.91,0,0,0,0,0,0,0:1.08571 14|19:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0.51,0,0.52,0.01,0,0.76,0,0,0,0,0,0,0:1.31429 0|9:0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.657143 0|0:0,0,0,0,0,0,0,0,0,0.43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,0,0.05,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0.03,0,0.04,0,0,0.01,0,0,0,0,0.01,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.03,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|16:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0.86,0,0,0.14,0,0,0,0,0,0,0:0.971429 16|0:0,0,0,0,0,0,0,0,0,0.14,0,0,0,0,0,0.93,0,0,0.01,0,0,0,0,0,0,0:0.971429 17|0:0,0,0,0,0,0,0,0,0,0.16,0,0,0,0,0,0.01,0.65,0,0,0,0,0,0,0,0,0:0.971429 0|0:0,0,0,0,0,0,0,0,0,0.18,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.971429 19|0:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0:1.08571 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98,0,0,0,0,0,0,0,0,0,0:0.971429 0|0:0,0,0,0,0,0,0,0,0,0.36,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|19:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0.01,0,0.01,0,0,1.06,0,0,0,0,0,0,0:1.08571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.48,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.3,0,0,0,0.03,0,0.01,0.01,0,0.02,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 0|0:0,0,0,0,0,0,0,0,0,0.45,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45,0.27,0,0.28,0,0,0,0,0,0,0:1.31429 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85,0.15,0,0,0,0,0,0,0,0,0:0.971429 19|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0,0,0,0.18,0,0,0.7,0,0,0,0,0,0,0:1.08571 0|0:0,0,0,0,0,0,0,0,0,0.28,0,0,0,0,0,0.01,0,0,0.01,0,0,0,0,0,0,0:0.628571 0|0:0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:0.628571 16|9:0,0,0,0,0,0,0,0,0.9,0,0,0,0,0,0,0.87,0.04,0,0.05,0,0,0,0,0.03,0,0:1 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.39,0,0.61,0,0,0,0,0,0,0,0,0,0:0.971429 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.971429 0|16:0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.971429 16|16:0,0,0,0,0,0,0,0,0,0.02,0,0,0,0.45,0,1.47,0,0,0.06,0,0,0,0,0,0,0:1.31429 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0:0.971429 +21 16496269 STR_869975 TGGACTTTTTTTTTTTTTT TGGACTTTTTTTTTTTT,TGGACTTTTTTTTTTTTT,TTGACTTTTTTTTTTTTTT,TGGACTTTTTTTTTTTTTTT,TGGACTTTTTTTTTTTTTTTT . PASS DR2=0.99,0.96,0,0.59,0;AF=0.0198,0.1884,0,0.1879,0;END=16496287;IMP;START=16496274;PERIOD=1;DSLEN=12.0,16.0 GT:DS:TRDS 0|0:0,0,0,0.01,0:1 0|0:0,0,0,0.25,0:1 0|0:0,0,0,0.49,0:1 0|0:0,0,0,0.29,0:1 0|0:0,0,0,0.09,0:1 4|0:0,0,0,1.03,0:1.25 4|0:0,0,0,0.99,0:1.25 0|0:0,0,0,0.26,0:1 0|0:0,0,0,0.08,0:1 4|2:0,0.96,0,1.04,0:1 0|4:0,0,0,0.78,0:1.25 2|0:0,0.99,0,0.01,0:0.75 2|0:0,0.99,0,0.01,0:0.75 0|0:0,0.05,0,0.14,0:1 0|0:0,0,0,0.4,0:1 2|0:0,1,0,0.13,0:0.75 2|2:0,1.63,0,0.09,0:0.5 0|1:1,0,0,0,0:0.5 0|0:0,0,0,0.12,0:1 0|0:0,0,0,0.31,0:1 0|0:0,0.14,0,0.01,0:1 4|0:0,0.04,0,0.98,0:1.25 4|0:0,0,0,1,0:1.25 0|2:0,0.98,0,0.13,0:0.75 4|0:0,0,0,0.74,0:1.25 2|0:0,0.99,0,0.33,0:0.75 0|4:0,0,0,0.77,0:1.25 0|0:0,0,0,0.18,0:1 2|0:0,1,0,0,0:0.75 2|0:0,1,0,0.02,0:0.75 4|0:0,0,0,0.5,0:1.25 0|4:0,0,0,0.91,0:1.25 4|2:0,1.04,0,0.72,0:1 0|0:0,0,0,0.03,0:1 0|4:0,0,0,1,0:1.25 0|4:0,0,0,1.31,0:1.25 0|0:0,0,0,0.14,0:1 0|0:0,0,0,0.02,0:1 4|0:0,0,0,0.62,0:1.25 2|2:0,2,0,0,0:0.5 0|2:0,1,0,0,0:0.75 2|0:0,1,0,0,0:0.75 0|0:0,0,0,0,0:1 0|4:0,0,0,0.68,0:1.25 0|1:0.98,0.02,0,0.12,0:0.5 0|0:0,0,0,0.37,0:1 0|2:0,1,0,0.06,0:0.75 4|2:0,1,0,0.62,0:1 2|2:0,2,0,0,0:0.5 0|4:0,0,0,1,0:1.25 +21 16497676 STR_869976 TTTTTTTTTTTT TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT . PASS DR2=0,0.98,0;AF=0,0.2057,0;END=16497687;IMP;START=16497676;PERIOD=1;DSLEN=10.0,13.0 GT:DS:TRDS 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 2|0:0,0.99,0:1 2|0:0,1,0:1 0|0:0,0.07,0:1.33333 0|0:0,0,0:1.33333 2|0:0,1,0:1 2|2:0,1.51,0:0.666667 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 2|0:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 2|0:0,1,0:1 2|0:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 2|2:0,2,0:0.666667 0|2:0,1,0:1 2|0:0,1,0:1 0|0:0,0,0:1.33333 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|0:0,0,0:1.33333 0|2:0,1,0:1 0|2:0,1,0:1 2|2:0,2,0:0.666667 0|0:0,0,0:1.33333 +21 16500609 STR_869978 ACACACACACACACACACATACACACAAACACACACA ACACACACACACACACATACACACAAACACACACA,ACACACACACACACACACACATACACACAAACACACACA . PASS DR2=0.98,0;AF=0.3769,0;END=16500645;IMP;START=16500609;PERIOD=2;DSLEN=17.5,19.5 GT:DS:TRDS 1|0:1,0:0.5 0|0:0,0:1 1|0:1,0:0.5 0|0:0,0:1 0|0:0,0:1 0|1:0.97,0:0.5 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 1|1:2,0:0 0|0:0,0:1 1|0:1,0:0.5 1|0:1,0:0.5 0|0:0.13,0:1 0|0:0,0:1 1|0:1,0:0.5 1|1:1.58,0:0 0|1:1,0:0.5 0|0:0,0:1 0|0:0,0:1 1|1:2,0:0 1|0:1,0:0.5 0|0:0,0:1 0|1:1,0:0.5 1|0:1,0:0.5 1|0:1,0:0.5 0|0:0,0:1 0|0:0,0:1 1|0:1,0:0.5 1|0:1,0:0.5 1|0:1,0:0.5 0|0:0,0:1 1|1:2,0:0 0|0:0,0:1 1|0:1,0:0.5 0|0:0,0:1 0|0:0,0:1 0|0:0,0:1 0|1:1,0:0.5 1|1:2,0:0 0|1:1,0:0.5 1|0:1,0:0.5 0|0:0,0:1 1|0:1,0:0.5 1|1:2,0:0 1|0:1,0:0.5 0|1:1,0:0.5 0|1:1,0:0.5 1|1:2,0:0 1|1:2,0:0 +21 16508956 STR_869981 TTTTTTTTTTTCTCT TTTTTTTTTCTCTCT,TTTTTTTTTTTCTCA,TTTTTTTTTTTTCTCT . PASS DR2=0,0,0.96;AF=0,0,0.1371;END=16508966;IMP;START=16508956;PERIOD=1;DSLEN=11.0,12.0 GT:DS:TRDS 3|0:0,0,1:1 0|0:0,0,0:0 3|0:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0.45:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 3|0:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0.07:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0.06:0 0|3:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 3|3:0,0,2:2 3|0:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0.05:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 3|0:0,0,1:1 0|0:0,0,0:0 3|0:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|3:0,0,1:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 3|0:0,0,1:1 0|3:0,0,1.08:1 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 3|0:0,0,1:1 +21 16509681 STR_869982 CTCAAAAAAAAAAAAAAAAAAC CTAAAAAAAAAAAAAAAAAC,CTCAAAAAAAAAAAAAAAAC,CTCAAAAAAAAAAAAAAAAAC,CAAAAAAAAAAAAAAAAAAAAC,CTAAAAAAAAAAAAAAAAAAAC,CTCAAAAAAAAAAAAAAAAAAA,CTCAAAAAAAAAAACAAAAAAC,CAAAAAAAAAAAAAAAAAAAAAC,CTAAAAAAAAAAAAAAAAAAAAC,CTCAAAAAAAAAAAAAAAAAAAC,CTCAAAAAAAAAAAAAAAAATAC,CTCAAAAAAAAAAAAAAAAAAAAA,CTCAAAAAAAAAAAAAAAAAAAAC . PASS DR2=0,0.99,0.65,0.62,0.43,0,0,0,0.27,0.85,0.03,0,0;AF=0,0.0504,0.0278,0.026,0.0755,0,0,0,0.0039,0.1156,0.0004,0,0;END=16509701;IMP;START=16509684;PERIOD=1;DSLEN=16.0,20.0 GT:DS:TRDS 10|0:0,0,0,0.01,0.01,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0.48,0.14,0,0,0,0,0.04,0,0,0:1 0|0:0,0,0,0,0.16,0,0,0,0,0.01,0,0,0:1 0|0:0,0,0,0.01,0.27,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0.02,0,0,0,0,0,0,0,0:1 0|10:0,0,0,0.01,0.34,0,0,0,0,0.74,0.03,0,0:1.25 0|0:0,0,0,0.01,0.01,0,0,0,0,0,0,0,0:1 4|0:0,0,0,0.65,0.17,0,0,0,0,0.02,0,0,0:1 0|5:0,0,0,0,0.58,0,0,0,0,0.01,0,0,0:1 10|0:0,0,0.49,0,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0.02,0.1,0,0,0,0,0.12,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 3|0:0,0,1,0.01,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0.01,0.01,0,0.23,0,0,0,0,0.02,0,0,0:1 0|0:0,0,0,0,0.04,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.01,0.4,0,0,0,0,0,0,0,0:1 0|0:0,0.02,0.21,0,0.09,0,0,0,0,0.08,0.01,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.07,0.25,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.08,0.04,0,0,0,0,0.04,0,0,0:1 10|10:0,0,0,0,0,0,0,0,0,2,0,0,0:1.5 10|0:0,0,0,0.04,0,0,0,0,0,1,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0.01,0,0,0:1 0|0:0,0,0,0,0.08,0,0,0,0,0.06,0,0,0:1 2|0:0,1,0,0.01,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0.07,0.26,0,0,0,0,0.03,0,0,0:1 0|0:0,0,0,0.08,0.04,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0.02,0,0,0,0,0.08,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0.01,0.17,0,0,0,0,0.01,0,0,0:1 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0:0.5 0|0:0,0,0,0,0.01,0,0,0,0,0,0,0,0:1 10|3:0,0,0.51,0,0,0,0,0,0,1,0,0,0:1 0|4:0,0,0,1,0.24,0,0,0,0,0.02,0,0,0:1 10|0:0,0,0,0.01,0.01,0,0,0,0.08,0.98,0,0,0:1.25 0|0:0,0,0,0,0.01,0,0,0,0,0.51,0,0,0:1 0|0:0,0,0,0.03,0.49,0,0,0,0,0.03,0,0,0:1 0|0:0,0,0,0,0.14,0,0,0,0,0,0,0,0:1 0|10:0,0,0,0,0.15,0,0,0,0.32,0.68,0,0,0:1.25 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 5|0:0,0,0,0,0.99,0,0,0,0,0,0,0,0:1 3|0:0,0,0.55,0,0,0,0,0,0,0,0,0,0:0.75 0|0:0,0,0,0.01,0.4,0,0,0,0,0,0,0,0:1 10|0:0,0,0,0,0.04,0,0,0,0,1.07,0,0,0:1.25 2|0:0,1,0,0,0,0,0,0,0,0,0,0,0:0.5 2|5:0,1,0,0,0.99,0,0,0,0,0,0,0,0:0.5 5|0:0,0,0,0,0.64,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0.04,0,0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0:1 10|2:0,1,0,0,0,0,0,0,0,1,0,0,0:0.75 +21 16510443 STR_869983 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . PASS DR2=0.76,0.67,0.62,0.58,0,1,0,0,0,0;AF=0.6898,0.2335,0.0281,0.0061,0,0.02,0,0,0,0;END=16510473;IMP;START=16510443;PERIOD=2;DSLEN=15.5,26.5 GT:DS:TRDS 2|1:0.65,1.35,0,0,0,0,0,0,0,0:0.272727 1|1:1.68,0.32,0,0,0,0,0,0,0,0:0.181818 2|1:0.89,1.11,0,0,0,0,0,0,0,0:0.272727 1|1:1.55,0.45,0,0,0,0,0,0,0,0:0.181818 1|1:1.98,0.02,0,0,0,0,0,0,0,0:0.181818 1|2:0.93,0.77,0.31,0,0,0,0,0,0,0:0.272727 2|1:1.01,0.99,0,0,0,0,0,0,0,0:0.272727 1|1:1.92,0.08,0,0,0,0,0,0,0,0:0.181818 1|1:1.98,0.02,0,0,0,0,0,0,0,0:0.181818 2|1:1,1,0,0,0,0,0,0,0,0:0.272727 1|1:1.81,0.19,0,0,0,0,0,0,0,0:0.181818 1|1:1.99,0.01,0,0,0,0,0,0,0,0:0.181818 1|1:2,0,0,0,0,0,0,0,0,0:0.181818 1|1:1.76,0.23,0,0,0,0,0,0,0,0:0.181818 2|1:1.43,0.57,0,0,0,0,0,0,0,0:0.272727 1|1:1.91,0.03,0,0,0,0,0,0,0,0:0.181818 0|1:0.78,0.19,0.03,0,0,0,0,0,0,0:0.0909091 1|6:1,0,0,0,0,1,0,0,0,0:0.727273 1|1:1.96,0.04,0,0,0,0,0,0,0,0:0.181818 1|1:1.74,0.26,0,0,0,0,0,0,0,0:0.181818 2|1:0.98,1.01,0,0.01,0,0,0,0,0,0:0.272727 2|1:1,1,0,0,0,0,0,0,0,0:0.272727 2|1:1.01,0.99,0,0,0,0,0,0,0,0:0.272727 1|1:1.52,0.41,0,0,0,0,0,0,0,0:0.181818 3|1:0.95,0.43,0.61,0,0,0,0,0,0,0:0.363636 1|1:1.93,0.07,0,0,0,0,0,0,0,0:0.181818 1|2:1.14,0.86,0,0,0,0,0,0,0,0:0.272727 1|1:1.91,0.09,0,0,0,0,0,0,0,0:0.181818 1|1:2,0,0,0,0,0,0,0,0,0:0.181818 1|1:1.81,0.19,0,0,0,0,0,0,0,0:0.181818 2|1:1,0.51,0.49,0,0,0,0,0,0,0:0.272727 1|2:1.03,0.97,0,0,0,0,0,0,0,0:0.272727 3|1:1,0,1,0,0,0,0,0,0,0:0.363636 1|1:1.68,0.32,0,0,0,0,0,0,0,0:0.181818 2|1:0.77,1.23,0,0,0,0,0,0,0,0:0.272727 1|2:1.42,0.58,0,0,0,0,0,0,0,0:0.272727 1|1:1.98,0.02,0,0,0,0,0,0,0,0:0.181818 1|1:1.52,0.48,0,0,0,0,0,0,0,0:0.181818 1|4:0.82,0.57,0.02,0.6,0,0,0,0,0,0:0.454545 1|1:1.91,0,0,0,0,0,0,0,0,0:0.181818 1|1:2,0,0,0,0,0,0,0,0,0:0.181818 1|1:2,0,0,0,0,0,0,0,0,0:0.181818 1|1:1.74,0.26,0,0,0,0,0,0,0,0:0.181818 2|1:0.6,1.38,0.02,0,0,0,0,0,0,0:0.272727 2|6:0,0.91,0.08,0,0,1,0,0,0,0:0.818182 2|1:1,1,0,0,0,0,0,0,0,0:0.272727 1|1:1.97,0.02,0,0,0,0,0,0,0,0:0.181818 2|1:1.29,0.71,0,0,0,0,0,0,0,0:0.272727 1|0:1,0,0,0,0,0,0,0,0,0:0.0909091 2|2:0,1.75,0.25,0,0,0,0,0,0,0:0.363636 +21 16519244 STR_869987 AAAAAAAAAAAAAAACAAAAA AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAACAACAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAACAAAAA,AAAAAAAAAAAAAAAAAAAAAAA . PASS DR2=0,0.99,0.15,0,0,0,0;AF=0,0.0906,0.0215,0,0,0,0;END=16519264;IMP;START=16519244;PERIOD=1;DSLEN=19.0,23.0 GT:DS:TRDS 2|0:0,1,0.45,0,0,0,0:0.75 0|0:0,0,0.22,0,0,0,0:1 0|0:0,0,0.01,0,0,0,0:1 0|0:0,0,0.13,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|2:0,1,0,0,0,0,0:0.75 0|0:0,0,0.01,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0:0.75 0|0:0,0,0.02,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0.03,0,0,0,0:1 0|0:0,0.01,0.04,0,0,0,0:1 0|0:0,0,0.2,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0.02,0.09,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0.01,0,0,0,0:1 0|0:0,0,0.06,0,0,0,0:1 2|0:0,1,0.02,0,0,0,0:0.75 2|0:0,1,0,0,0,0,0:0.75 0|0:0,0,0.01,0,0,0,0:1 0|0:0,0,0.12,0,0,0,0:1 0|0:0,0.02,0.02,0,0,0,0:1 0|0:0,0,0.01,0,0,0,0:1 0|0:0,0,0.07,0,0,0,0:1 0|0:0,0,0.03,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0.02,0,0,0,0:1 0|0:0,0.02,0.02,0,0,0,0:1 0|0:0,0,0.03,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0.08,0,0,0,0:1 2|0:0,1,0.11,0,0,0,0:0.75 0|0:0,0,0.03,0,0,0,0:1 0|0:0,0,0.02,0,0,0,0:1 0|0:0,0,0.07,0,0,0,0:1 0|2:0,1,0.03,0,0,0,0:0.75 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 2|0:0,1,0.02,0,0,0,0:0.75 0|0:0,0,0.06,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 0|0:0,0,0.02,0,0,0,0:1 0|0:0,0,0.09,0,0,0,0:1 0|0:0,0,0,0,0,0,0:1 2|0:0,1,0,0,0,0,0:0.75 +21 16522219 STR_869989 TTTTTTTTTTTTTG TTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTG,TTTTTTTTTTTTTTTT . PASS DR2=0.98,0,0;AF=0.3027,0,0;END=16522231;IMP;START=16522219;PERIOD=1;DSLEN=13.0,15.0 GT:DS:TRDS 1|0:1,0,0:0.5 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|1:1,0,0:0.5 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 1|1:2,0,0:1 0|0:0,0,0:0 1|0:1,0,0:0.5 1|0:1.01,0,0:0.5 0|0:0.04,0,0:0 0|0:0,0,0:0 1|0:1,0,0:0.5 1|0:1,0,0:0.5 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 1|0:1,0,0:0.5 1|0:1,0,0:0.5 0|0:0,0,0:0 0|1:1,0,0:0.5 1|0:0.75,0,0:0.5 1|0:1,0,0:0.5 0|0:0,0,0:0 0|0:0,0,0:0 1|0:1,0,0:0.5 1|0:1,0,0:0.5 0|0:0.47,0,0:0 0|0:0,0,0:0 0|1:1,0,0:0.5 0|0:0,0,0:0 1|0:1,0,0:0.5 0|0:0,0,0:0 0|0:0,0,0:0 0|0:0,0,0:0 0|1:1,0,0:0.5 1|1:1.99,0,0:1 0|1:1,0,0:0.5 1|0:1,0,0:0.5 0|0:0.01,0,0:0 1|0:1,0,0:0.5 0|1:0.99,0,0:0.5 1|0:1,0,0:0.5 0|1:1,0,0:0.5 0|1:1,0,0:0.5 0|1:1,0,0:0.5 1|1:2,0,0:1 +21 16528120 STR_869992 CACACACACACACACACACACACACACACACACACACACAC CACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACACACACACAC,CACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC . PASS DR2=0,0,0,0.65,0.35,0.58,0.03,0.83,0.71,0.83,0.9,0,0;AF=0,0,0,0.0129,0.0473,0.1046,0.0004,0.2633,0.0074,0.0412,0.0349,0,0;END=16528160;IMP;START=16528120;PERIOD=2;DSLEN=14.5,29.5 GT:DS:TRDS 8|0:0,0,0,0,0.02,0.01,0,1,0,0,0,0,0:1 6|0:0,0,0,0,0.36,0.63,0,0.11,0,0,0,0,0:0.866667 0|0:0,0,0,0,0.09,0.06,0,0,0,0,0,0,0:0.8 0|0:0,0,0,0,0.23,0.08,0,0.09,0,0,0,0,0:0.8 6|8:0,0,0,0,0,0.87,0,0.99,0,0,0,0,0:1.06667 0|8:0,0,0,0,0,0.08,0,0.94,0,0,0,0,0:1 0|0:0,0,0,0.02,0.01,0,0,0,0,0,0,0,0:0.8 8|0:0,0,0,0,0.34,0.15,0,0.64,0,0,0,0,0:1 0|0:0,0,0,0,0.21,0.06,0,0,0,0,0,0,0:0.8 8|11:0,0,0,0,0,0,0,1.46,0,0,0.54,0,0:1.4 6|6:0,0,0,0,0.01,1.28,0,0.43,0,0,0,0,0:0.933333 10|0:0,0,0,0,0,0,0,0,0,1,0,0,0:1.13333 8|0:0,0,0,0,0.06,0.07,0,1.01,0,0,0,0,0:1 0|0:0,0,0,0,0.03,0.17,0,0.03,0,0,0,0,0:0.8 0|6:0,0,0,0,0.04,1.09,0,0,0,0,0,0,0:0.866667 10|0:0,0,0,0,0.18,0,0,0,0,1,0,0,0:1.13333 8|0:0,0,0,0,0.1,0.34,0,1.04,0,0,0,0,0:1 0|6:0,0,0,0,0,1,0,0,0,0,0,0,0:0.866667 0|8:0,0,0,0,0.13,0,0,0.78,0,0,0,0,0:1 0|0:0,0,0,0.04,0.18,0.21,0,0.11,0,0,0,0,0:0.8 8|0:0,0,0,0,0,0.06,0,1,0,0,0,0,0:1 8|0:0,0,0,0,0,0.03,0,1,0,0,0,0,0:1 4|0:0,0,0,0.91,0,0.01,0,0,0,0,0,0,0:0.666667 0|8:0,0,0,0,0.04,0.08,0,1.02,0,0,0,0,0:1 8|0:0,0,0,0.04,0,0.33,0,0.66,0,0,0,0,0:1 10|0:0,0,0,0,0.06,0.08,0,0.02,0,1,0,0,0:1.13333 0|0:0,0,0,0.05,0.13,0.05,0,0,0,0,0,0,0:0.8 0|0:0,0,0,0.05,0.01,0.72,0,0.09,0,0,0,0,0:0.8 11|0:0,0,0,0,0,0,0,0,0,0,1,0,0:1.2 8|0:0,0,0,0,0,0,0,1,0,0,0,0,0:1 0|6:0,0,0,0,0.17,1.09,0.01,0.25,0.01,0.01,0.01,0,0:0.866667 0|0:0,0,0,0.06,0,0.03,0,0,0,0,0,0,0:0.8 5|8:0,0,0,0,1,0,0,0.83,0,0.17,0,0,0:0.933333 0|0:0,0,0,0,0.03,0.04,0,0,0,0,0,0,0:0.8 8|0:0,0,0,0,0.04,0.15,0,1.01,0,0,0,0,0:1 0|0:0,0,0,0,0,0.06,0,0,0,0,0,0,0:0.8 0|0:0,0,0,0,0.24,0.26,0,0.04,0,0,0,0,0:0.8 0|8:0,0,0,0,0,0,0,0.8,0,0,0,0,0:1 0|8:0,0,0,0,0.15,0.06,0,1.03,0,0,0,0,0:1 11|10:0,0,0,0.01,0.03,0.04,0,0.02,0,0.54,1.02,0,0:1.53333 0|11:0,0,0,0,0,0,0,0,0,0.08,0.92,0,0:1.2 8|6:0,0,0,0,0,1,0,0.69,0,0.31,0,0,0:1.06667 8|0:0,0,0,0,0.04,0.08,0,0.57,0,0,0,0,0:1 8|0:0,0,0,0.04,0,0.01,0,1,0,0,0,0,0:1 0|9:0,0,0,0.02,0.3,0.11,0,0.31,0.72,0,0,0,0:1.06667 8|0:0,0,0,0,0.01,0,0,1,0,0,0,0,0:1 0|8:0,0,0,0,0,0.03,0,1.39,0,0,0,0,0:1 0|8:0,0,0,0.05,0.02,0.05,0,1.01,0,0,0,0,0:1 0|8:0,0,0,0,0.47,0,0,1,0,0,0,0,0:1 8|8:0,0,0,0,0,0,0.03,1.97,0,0,0,0,0:1.2 +21 16565067 STR_870005 TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT TTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT,TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT . PASS DR2=0,0,0.71,0.85,0.97,0.13,0;AF=0,0,0.0209,0.2806,0.1616,0.0027,0;END=16565119;IMP;START=16565067;PERIOD=5;DSLEN=6.6,16.6 GT:DS:TRDS 4|0:0,0,0,1,0,0,0:0.7 0|3:0,0,0.94,0.07,0,0,0:0.6 0|0:0,0,0,0.02,0,0,0:0.8 0|0:0,0,0,0,0,0,0:0.8 0|4:0,0,0,1.04,0,0,0:0.7 0|4:0,0,0.01,0.99,0,0,0:0.7 0|4:0,0,0,0.79,0,0,0:0.7 4|0:0,0,0.06,1.14,0,0,0:0.7 5|4:0,0,0,1,1,0,0:0.8 4|5:0,0,0,1,1,0,0:0.8 0|0:0,0,0.02,0.18,0,0,0:0.8 5|0:0,0,0,0,0.99,0,0:0.9 5|0:0,0,0,0.24,1.01,0,0:0.9 0|4:0,0,0,0.63,0,0,0:0.7 0|0:0,0,0,0.03,0.01,0,0:0.8 5|4:0,0,0,1,1,0,0:0.8 0|0:0,0,0,0,0,0,0:0.8 0|0:0,0,0,0,0,0,0:0.8 0|4:0,0,0,1,0,0,0:0.7 0|0:0,0,0,0,0,0,0:0.8 4|4:0,0,0,2,0,0,0:0.6 3|0:0,0,0.72,0.28,0,0,0:0.6 0|5:0,0,0,0,1,0,0:0.9 4|4:0,0,0,2,0,0,0:0.6 0|0:0,0,0,0.5,0,0,0:0.8 5|0:0,0,0,0.03,1,0.02,0:0.9 0|0:0,0,0,0.02,0.01,0.18,0:0.8 0|0:0,0,0,0.41,0,0,0:0.8 5|0:0,0,0,0,1,0,0:0.9 5|0:0,0,0,0,1,0,0:0.9 0|0:0,0,0,0,0.01,0,0:0.8 0|0:0,0,0,0.07,0,0,0:0.8 0|5:0,0,0,0.04,0.84,0.04,0:0.9 0|0:0,0,0,0.06,0.23,0,0:0.8 4|0:0,0,0,1.02,0,0,0:0.7 0|0:0,0,0,0,0,0,0:0.8 0|5:0,0,0,0.19,1,0,0:0.9 5|4:0,0,0.03,0.97,1,0,0:0.8 5|4:0,0,0.03,0.97,1,0,0:0.8 5|0:0,0,0,0.02,1,0,0:0.9 0|5:0,0,0,0,1,0,0:0.9 5|0:0,0,0,0,1,0,0:0.9 4|0:0,0,0,1,0,0,0:0.7 4|4:0,0,0.01,1.51,0,0,0:0.6 0|4:0,0,0,1,0,0,0:0.7 4|0:0,0,0,1,0,0,0:0.7 4|4:0,0,0,2,0,0,0:0.6 0|0:0,0,0,0.07,0,0.02,0:0.8 0|4:0,0,0,1.05,0.05,0,0:0.7 4|4:0,0,0.28,1.72,0,0,0:0.6 +21 16567675 STR_870007 TGTTCCAAAAAAAAAAAAAAAAAAAGTGGA TGTTCCAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAGTGGA,TGTACAAAAAAAAAAAAAAAAAAAAGTGGA,TGTCCCAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAGGGGA,TTTTCCAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAGTGGAT,TGTTCAAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTACAAAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTCCAAAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCAAAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAAAAGGGGA,TGTTCCAAAAAAAAAAAAAAAAAAAAAAGTGGA,TTTTCAAAAAAAAAAAAAAAAAAAAAAAGTGGA,TGTTCCAAAAAAAAAAAAAAAAAAAAAAAGTGGA . PASS DR2=0,0.08,0,0,0,0,0,0,0,0,0.76,0,0,0.75,0,0.96,0,0;AF=0,0.0034,0,0,0,0,0,0,0,0,0.0222,0,0,0.0132,0,0.2147,0,0;END=16567699;IMP;START=16567681;PERIOD=1;DSLEN=13.0,23.0 GT:DS:TRDS 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|14:0,0,0,0,0,0,0,0,0,0,0.02,0,0,0.95,0,0.02,0,0:1.5 0|0:0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|16:0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0.06,0,0.94,0,0:1.5 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.01,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|11:0,0,0,0,0,0,0,0,0,0,0.84,0,0,0,0,0.16,0,0:1.4 0|0:0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|0:0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:1.8 16|0:0,0.02,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:1.8 0|0:0,0.15,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 16|0:0,0,0,0,0,0,0,0,0,0,0.11,0,0,0,0,0.89,0,0:1.5 0|0:0,0.01,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|11:0,0,0,0,0,0,0,0,0,0,0.94,0,0,0.03,0,0.03,0,0:1.4 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 0|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 16|0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0:1.5 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0:1.8 0|0:0,0.04,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0:1.2 0|16:0,0,0,0,0,0,0,0,0,0,0.3,0,0,0,0,0.7,0,0:1.5 16|16:0,0,0,0,0,0,0,0,0,0,0,0,0,0.28,0,1.72,0,0:1.8 diff --git a/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_bestguess_norm.vcf b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_bestguess_norm.vcf new file mode 100644 index 00000000..a4d1a859 --- /dev/null +++ b/trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_bestguess_norm.vcf @@ -0,0 +1,200 @@ +##fileformat=VCFv4.1 +##FILTER= +##command=HipSTR-v0.6.2 --bams /gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12878.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12891.bam,/gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12892.bam --fasta /storage/resources/dbase/human/hg19/hg19.fa --regions gangstr_ref_13_hipstrformat.bed --chrom chr21 --str-vcf trio.gangref.chr21.vcf.gz --min-reads 30 +##reference=/storage/resources/dbase/human/hg19/hg19.fa +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##command-AnnotaTR=/Users/melissagymrek/workspace/TRTools/trtools/annotaTR/annotaTR.py --vcf trtools/testsupport/sample_vcfs/dumpSTR_vcfs/trio_chr21_hipstr.sorted.vcf.gz --vcftype hipstr --dosages bestguess_norm --out trtools/testsupport/sample_vcfs/annotaTR_vcfs/hipstr_bestguess_norm +##FORMAT= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 NA12891 NA12892 +chr21 9416189 GANGSTR_436658 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG GTGTGTGTGTGTGTGTGTGTGTGTGCG,GTGTGTGTGTGTGTGTGTGTGTGTGTGCA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.35;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9416189;END=9416216;PERIOD=2;NSKIP=0;NFILT=3;BPDIFFS=-4,-2;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0;DSLEN=12.0,14.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9418390 GANGSTR_436659 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9418390;END=9418404;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9422100 GANGSTR_436660 TCTCTAATAATAATAATAA TCTCTAATAATAAAAA,TGTCTAATAATAAAAA,TCTCTAATAATAAAAAA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.07;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.16;OUTFRAME_DOWN=0.09;START=9422104;END=9422118;PERIOD=3;NSKIP=0;NFILT=3;BPDIFFS=-3,-3,-2;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0,0;DSLEN=4.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9432567 GANGSTR_436661 CTACAGCTACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9432567;END=9432578;PERIOD=6;NSKIP=0;NFILT=0;DP=649;DSNP=0;DSTUTTER=0;DFLANKINDEL=44;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:192:0:0:14:76.50|115.50:0|0:.:0:.:0:0|132:0|120:0 0|0:0|0:1:1:202:0:0:9:90.53|111.47:0|0:.:0:.:0:0|131:0|129:0 0|0:0|0:1:1:255:0:0:21:90.10|164.90:0|0:.:0:.:0:0|184:0|170:0 +chr21 9434394 GANGSTR_436662 AATAAATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.75;INFRAME_UP=0.18;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9434394;END=9434429;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=792;DSNP=0;DSTUTTER=138;DFLANKINDEL=12;AN=6;REFAC=3;AC=3;DSLEN=8.0,9.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-4:1:0.5:243:0:48:3:108.82|134.18:0|0:3.6:-1.58:159:-0.71:-12|9;-11|3;-9|1;-8|1;-4|17;0|29;4|11:-12|9;-4|16;0|29;4|11:1 0|1:0|-4:1:0.5:269:0:45:3:122.98|146.02:0|0:26:-1.28:181:-0.05:-20|1;-9|1;-8|1;-4|50;-2|1;0|38;4|18:-4|47;0|36;4|16:1 0|1:0|-4:1:0.5:280:0:45:6:135.71|144.29:0|0:15.26:-0.25:195:-0.11:-12|10;-8|3;-4|43;0|31;4|4:-12|10;-4|41;0|28;4|4:1 +chr21 9438026 GANGSTR_436663 CCGCCGCCGCCG . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9438026;END=9438037;PERIOD=3;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9438376 GANGSTR_436664 GCCGCCGCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9438376;END=9438387;PERIOD=3;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9442752 GANGSTR_436665 ATGAAATGAA . . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9442752;END=9442761;PERIOD=5;NSKIP=0;NFILT=0;DP=935;DSNP=0;DSTUTTER=126;DFLANKINDEL=85;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:281:0:33:36:140.50|140.50:0|0:.:0:.:0:-18|29;-5|1;0|191:-15|24;-5|5;0|184:0 0|0:0|0:1:1:312:0:16:14:156.00|156.00:0|0:.:0:.:0:-18|13;-5|1;0|232:-15|12;-5|1;0|231:0 0|0:0|0:1:1:342:0:77:35:171.00|171.00:0|0:.:0:.:0:-18|34;-5|35;0|214:-15|28;-5|40;0|212:0 +chr21 9442978 GANGSTR_436666 AAATGATGAAATGATG AAATGAAATGATGAAATGACG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.2;OUTFRAME_UP=0.13;OUTFRAME_DOWN=0.03;START=9442978;END=9442993;PERIOD=8;NSKIP=0;NFILT=3;BPDIFFS=5;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=2.0,2.625 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9443108 GANGSTR_436667 TGAAATGATGAAATGATGAAATGA TGAAATGATGAAATAATGAAATGA . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9443108;END=9443131;PERIOD=8;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9443211 GANGSTR_436668 GATGAAATGAAATGATGAAATG GGATGAAATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9443217;END=9443232;PERIOD=8;NSKIP=0;NFILT=3;BPDIFFS=-12;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=0.5,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9446482 GANGSTR_436669 TTTTGTTTTGTTTTG TTTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.45;OUTFRAME_UP=0.13;OUTFRAME_DOWN=0.24;START=9446482;END=9446496;PERIOD=5;NSKIP=0;NFILT=3;BPDIFFS=-10;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=1.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9447827 GANGSTR_436670 GGATATATATATATATATAT GTATATATATATATATATAT . . INFRAME_PGEOM=0.37;INFRAME_UP=0.11;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9447829;END=9447846;PERIOD=2;NSKIP=2;NFILT=1;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=9.0,9.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9455617 GANGSTR_436671 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9455617;END=9455628;PERIOD=4;NSKIP=0;NFILT=0;DP=722;DSNP=0;DSTUTTER=2;DFLANKINDEL=42;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:223:0:0:11:76.49|146.51:0|0:.:0:.:0:0|159;51|1:0|147:0 0|0:0|0:1:1:255:0:1:13:107.02|147.98:0|0:.:0:.:0:-4|1;0|186:-4|1;0|174:0 0|0:0|0:1:1:244:0:1:18:121.67|122.33:0|0:.:0:.:0:-37|2;-4|1;0|172:-4|1;0|162:0 +chr21 9455710 GANGSTR_436672 TATATGGTATATGGTATATGG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9455710;END=9455730;PERIOD=7;NSKIP=1;NFILT=0;DP=760;DSNP=0;DSTUTTER=16;DFLANKINDEL=16;AN=4;REFAC=4;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:363:0:13:8:181.50|181.50:0|0:.:0:.:0:-7|11;0|162:-7|10;0|172:0 0|0:0|0:1:1:397:0:3:8:198.50|198.50:0|0:.:0:.:0:0|187:0|188:0 +chr21 9456783 GANGSTR_436673 TAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=9456783;END=9456800;PERIOD=6;NSKIP=0;NFILT=0;DP=1253;DSNP=0;DSTUTTER=18;DFLANKINDEL=129;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:390:0:5:47:195.00|195.00:0|0:.:0:.:0:-11|1;-6|2;-1|1;0|196:-6|2;0|177:0 0|0:0|0:1:1:412:0:6:40:206.00|206.00:0|0:.:0:.:0:-6|5;-1|3;0|236:-6|5;0|216:0 0|0:0|0:1:1:451:0:7:42:225.50|225.50:0|0:.:0:.:0:-6|3;-1|3;0|239:-6|3;0|226:0 +chr21 9467572 GANGSTR_436674 ACACACACACAC ATACACACACAC . . INFRAME_PGEOM=0.46;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9467572;END=9467583;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=1202;DSNP=0;DSTUTTER=345;DFLANKINDEL=93;AN=6;REFAC=3;AC=3;DSLEN=6.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:376:0:121:27:120.64|255.36:0|0:250.63:-11.7:324:-0.78:-2|5;0|226;4|51;8|2;10|4:-2|5;0|140;2|36;4|62:0 0|1:0|0:1:0.5:405:0:108:25:144.27|260.73:0|0:335.88:-9.51:352:-5.37:-4|1;-2|6;0|246;4|48;8|1;10|9:-2|6;0|185;2|30;4|55:0 0|1:0|0:1:0.5:421:0:116:41:150.35|270.65:0|0:342.37:-9.51:364:-2.92:-2|8;0|266;4|50;8|9;10|1:-2|7;0|184;2|28;4|67:0 +chr21 9468277 GANGSTR_436675 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9468277;END=9468288;PERIOD=4;NSKIP=0;NFILT=0;DP=759;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:236:0:0:1:136.48|99.52:0|0:.:0:.:0:0|163:0|161:0 0|0:0|0:1:1:282:0:0:1:164.50|117.50:0|0:.:0:.:0:0|204;2|1:0|200:0 0|0:0|0:1:1:241:0:1:1:120.50|120.50:0|0:.:0:.:0:-1|1;0|169:-8|1;0|168:0 +chr21 9473512 GANGSTR_436676 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.34;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=9473512;END=9473523;PERIOD=4;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9473839 GANGSTR_436677 GGAAGGAA . . . INFRAME_PGEOM=0.94;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9473839;END=9473846;PERIOD=4;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9474675 GANGSTR_436678 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9474675;END=9474689;PERIOD=5;NSKIP=0;NFILT=0;DP=537;DSNP=0;DSTUTTER=0;DFLANKINDEL=12;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:163:0:0:5:87.96|75.04:0|0:.:0:.:0:0|93:0|93:0 0|0:0|0:1:1:160:0:0:6:78.53|81.47:0|0:.:0:.:0:0|85:0|84:0 0|0:0|0:1:1:214:0:0:1:133.00|81.00:0|0:.:0:.:0:0|129:0|129:0 +chr21 9477000 GANGSTR_436679 AATAATAATAATATGTG AATAATAATAATATGTT,AATAATAATGATATGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9477000;END=9477011;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=548;DSNP=0;DSTUTTER=24;DFLANKINDEL=7;AN=6;REFAC=2;AC=1,3;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|2:0|0:1:0.5:158:0:1:3:65.47|92.53:0|0:16.48:-1.57:139:-0.22:0|112:0|105:0 1|2:0|0:1:0.5:168:0:2:2:65.12|102.88:0|0:89.04:-2.09:147:-0.4:0|122:0|116:0 0|2:0|0:1:0.5:222:0:21:2:94.08|127.92:0|0:199.15:-1.09:191:-0.18:-6|1;-3|20;0|133:-3|20;0|126:0 +chr21 9483511 GANGSTR_436680 CCGCCGCCGCCG . . . INFRAME_PGEOM=0.96;INFRAME_UP=0.01;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9483511;END=9483522;PERIOD=3;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9483785 GANGSTR_436681 CCGCCGCCGCCG . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9483785;END=9483796;PERIOD=3;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9487190 GANGSTR_436682 TATGGAGAGAGAGAGAGAGAGAGAGAGAGA TATGGAGAGAGAGAGAGAGAGAGA,TGTGGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.61;INFRAME_UP=0.3;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9487194;END=9487219;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-6;DP=734;DSNP=0;DSTUTTER=279;DFLANKINDEL=12;AN=6;REFAC=0;AC=3,3;DSLEN=10.0,13.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|2:-6|-6:1:0.5:213:0:70:2:137.07|75.93:0|0:73.62:-5.33:175:-0.13:-27|1;-23|5;-13|1;-8|1;-6|63;-4|18;0|10;4|16:-8|1;-6|54;-4|17;0|6;4|15:0 1|2:-6|-6:1:0.5:271:0:104:5:177.18|93.82:0|0:114.73:-7.76:222:-1.38:-38|1;-23|1;-10|1;-8|6;-6|78;-4|32;-2|3;0|24;2|1;4|23;6|6;10|1:-8|5;-6|68;-4|30;-2|2;0|24;2|1;4|20;6|5:0 1|2:-6|-6:1:0.5:250:0:105:5:168.96|81.04:0|0:27.42:-9.56:201:-0.2:-27|1;-8|3;-6|55;-4|18;-2|6;0|46;4|11:-8|3;-6|49;-4|18;-2|6;0|42;4|8:0 +chr21 9488003 GANGSTR_436683 TGTGTGTGTG . . . INFRAME_PGEOM=0.96;INFRAME_UP=0;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9488003;END=9488012;PERIOD=2;NSKIP=0;NFILT=0;DP=582;DSNP=0;DSTUTTER=9;DFLANKINDEL=2;AN=6;REFAC=6;DSLEN=5.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:172:0:4:2:86.00|86.00:0|0:.:0:.:0:-9|1;-2|4;0|131:-2|3;0|125:0 0|0:0|0:1:1:224:0:5:0:112.00|112.00:0|0:.:0:.:0:-2|4;0|167:-2|3;0|150:0 0|0:0|0:1:1:186:0:0:0:95.50|90.50:0|0:.:0:.:0:0|151:0|142:0 +chr21 9489665 GANGSTR_436684 CGTATATGTATAT CATATATGTATGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9489666;END=9489677;PERIOD=6;NSKIP=0;NFILT=2;BPDIFFS=0;DP=115;DSNP=0;DSTUTTER=0;DFLANKINDEL=17;AN=2;REFAC=1;AC=1;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:115:0:0:17:75.99|39.01:0|0:119.18:-3.06:100:-1.06:0|63:0|56:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9489775 GANGSTR_436685 TATGTATGTAT TATGTATGTAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.65;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=9489775;END=9489782;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=352;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:117:0:0:3:59.47|57.53:0|0:197.04:-0.04:104:-0.72:-2|2;0|89:0|88:0 0|1:0|0:1:0.5:116:0:0:0:72.48|43.52:0|0:138.53:-2.22:105:-0.19:0|86:0|84:0 0|1:0|0:1:0.5:119:0:0:1:72.00|47.00:0|0:144.97:-1.7:107:-0.3:-2|1;0|87:0|85:0 +chr21 9500096 GANGSTR_436686 ATAATAATAATAATAATAATAAA ATAATAATAATAATAATAAA,ATAATAATAATAATAATAAT . . INFRAME_PGEOM=0.78;INFRAME_UP=0.09;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=9500096;END=9500116;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3,-3;DP=424;DSNP=0;DSTUTTER=28;DFLANKINDEL=15;AN=6;REFAC=0;AC=3,3;DSLEN=6.0,7.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|2:-3|-3:1:0.5:115:0:1:4:60.05|54.95:0|0:86.54:-0.15:115:-4.1:-3|68;0|1:-3|64;0|1:0 1|2:-3|-3:1:0.5:173:0:2:9:104.99|68.01:0|0:150.18:-2.22:173:-7.3:-6|1;-4|1;-3|110:-9|1;-6|1;-3|103:0 1|2:-3|-3:1:0.5:136:0:25:2:87.00|49.00:0|0:63.99:-2.85:136:-5.52:-3|72;0|19;6|3:-3|68;0|17;6|2:0 +chr21 9501849 GANGSTR_436687 ATATATATATATATACAC AATATATATAT . . INFRAME_PGEOM=0.61;INFRAME_UP=0;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.79;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.07;START=9501849;END=9501862;PERIOD=2;NSKIP=2;NFILT=0;BPDIFFS=-7;DP=168;DSNP=0;DSTUTTER=42;DFLANKINDEL=21;AN=2;REFAC=1;AC=1;DSLEN=3.5,7.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. 0|1:0|-7:1:0.5:168:0:42:21:95.41|72.59:0|0:237.52:-1.06:165:-0.2:-9|1;-8|6;-7|49;-6|2;-4|18;-3|2;-2|12;0|38:-15|1;-9|2;-7|52;-5|1;-4|17;-2|13;0|34:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9502317 GANGSTR_436688 TTCTCTTTCTCTTTCTCTAAAGT TTCTCTTTCTCTTTCTCTAAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9502317;END=9502334;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=342;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:90:0:0:0:55.00|35.00:0|0:102.65:-1.51:78:-1.65:0|56:0|58:0 0|1:0|0:1:0.5:124:0:0:0:82.95|41.05:0|0:92.35:-4.49:100:-2.89:0|71:0|74:0 0|1:0|0:1:0.5:128:0:0:0:83.00|45.00:0|0:112.34:-3.61:104:-1.72:0|79:0|79:0 +chr21 9514260 GANGSTR_436689 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9514260;END=9514271;PERIOD=4;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9519030 GANGSTR_436690 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9519030;END=9519037;PERIOD=4;NSKIP=0;NFILT=0;DP=476;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:119:0:0:1:59.50|59.50:0|0:.:0:.:0:0|92:0|89:0 0|0:0|0:1:1:181:0:0:0:90.50|90.50:0|0:.:0:.:0:0|142:0|138:0 0|0:0|0:1:1:176:0:0:0:88.00|88.00:0|0:.:0:.:0:0|138:0|137:0 +chr21 9522213 GANGSTR_436691 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9522213;END=9522224;PERIOD=4;NSKIP=0;NFILT=0;DP=530;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:137:0:0:0:68.50|68.50:0|0:.:0:.:0:0|106:0|105:0 0|0:0|0:1:1:186:0:0:1:93.00|93.00:0|0:.:0:.:0:0|139:0|134:0 0|0:0|0:1:1:207:0:0:0:103.50|103.50:0|0:.:0:.:0:0|150:0|149:0 +chr21 9531868 GANGSTR_436692 ATAGATAGATAGATAGATAG ATAGATAGATAGATAGATAGATAG,ACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG,ACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG,ACAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGATAGATAGATAG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=9531868;END=9531887;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,28,32,32;DP=669;DSNP=0;DSTUTTER=88;DFLANKINDEL=8;AN=6;REFAC=0;AC=1,1,2,2;DSLEN=5.0,13.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 4|3:32|32:1:0.5:186:0:27:4:64.99|121.01:0|0:25.52:-6.53:128:-0.37:-14|1;-10|1;-5|8;-1|22;0|75;3|13;7|1;28|4;32|2:28|11;32|18;36|3:2 4|2:32|28:1:0.5:230:0:27:3:109.51|120.49:0|0:3.36:-0.44:146:-0.3:-14|2;-5|18;-1|20;0|85;3|18;28|3;32|5:28|14;32|17:1.875 1|3:4|32:1:0.5:253:0:34:1:50.45|202.55:0|0:6.21:-29.16:204:-2.65:-5|13;-1|33;0|74;3|9;4|11;7|9;24|1;28|9;32|1:0|1;4|12;24|1;28|23;32|13;36|2:1.125 +chr21 9534565 GANGSTR_436693 CACACACACACA . . . INFRAME_PGEOM=0.76;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9534565;END=9534576;PERIOD=2;NSKIP=0;NFILT=0;DP=525;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=6;REFAC=6;DSLEN=6.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:164:0:0:2:79.46|84.54:0|0:.:0:.:0:-13|1;0|114:0|108:0 0|0:0|0:1:1:173:0:0:0:88.00|85.00:0|0:.:0:.:0:0|138:0|123:0 0|0:0|0:1:1:188:0:2:2:91.41|96.59:0|0:.:0:.:0:-12|1;-4|1;-2|1;0|147:-4|1;-2|1;0|139:0 +chr21 9536938 GANGSTR_436694 TGGAATGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9536938;END=9536947;PERIOD=5;NSKIP=0;NFILT=0;DP=499;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:141:0:0:1:50.00|91.00:0|0:.:0:.:0:-12|1;0|108:0|108:0 0|0:0|0:1:1:169:0:0:1:85.00|84.00:0|0:.:0:.:0:0|119:0|119:0 0|0:0|0:1:1:189:0:0:0:80.00|109.00:0|0:.:0:.:0:0|151:0|151:0 +chr21 9542892 GANGSTR_436695 TGTGGGGTGGG TTTGGGGTGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9542893;END=9542902;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=393;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=5;AC=1;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:101:0:0:1:50.50|50.50:0|0:27.09:0:.:0:0|81:0|80:0 0|0:0|0:1:1:144:0:0:0:72.00|72.00:0|0:38.8:0:.:0:0|105:0|105:0 0|1:0|0:1:0.5:148:0:0:0:116.38|31.62:0|0:50.61:-13.88:129:-0.47:0|109:0|109:0 +chr21 9544689 GANGSTR_436697 CCCAGACCCAGACCCA CCCAGACCCAGACCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9544689;END=9544700;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=512;DSNP=0;DSTUTTER=3;DFLANKINDEL=5;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:156:0:2:1:123.73|32.27:0|0:34.82:-16.34:127:-0.5:-12|1;0|102:-12|1;0|104:0 0|1:0|0:1:0.5:185:0:1:3:142.73|42.27:0|0:40.82:-17.55:142:-0.46:-6|3;0|112:0|112:0 0|1:0|0:1:0.5:171:0:0:1:138.98|32.02:0|0:34.54:-20.18:143:0:-27|1;0|114:0|116:0 +chr21 9545748 GANGSTR_436698 GCCCTGCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=9545748;END=9545762;PERIOD=5;NSKIP=0;NFILT=1;DP=301;DSNP=0;DSTUTTER=0;DFLANKINDEL=13;AN=4;REFAC=4;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:131:0:0:11:65.50|65.50:0|0:.:0:.:0:-28|1;-22|5;0|72;1|1;6|1:0|74:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:170:0:0:2:85.00|85.00:0|0:.:0:.:0:0|107;1|1:0|107:0 +chr21 9545997 GANGSTR_436699 CCCTGCCCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.16;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=9545997;END=9546008;PERIOD=6;NSKIP=0;NFILT=0;DP=452;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:138:0:0:3:54.11|83.89:0|0:.:0:.:0:-11|1;0|95:0|93:0 0|0:0|0:1:1:153:0:0:4:80.20|72.80:0|0:.:0:.:0:-17|1;-11|3;0|104:0|104:0 0|0:0|0:1:1:161:0:0:0:79.01|81.99:0|0:.:0:.:0:0|112:0|113:0 +chr21 9546390 GANGSTR_436700 GCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9546390;END=9546399;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9546720 GANGSTR_436701 CTGGCCCTGGCC . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9546720;END=9546731;PERIOD=6;NSKIP=0;NFILT=0;DP=462;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:148:0:1:2:74.00|74.00:0|0:.:0:.:0:-6|1;0|102:-6|1;0|103:0 0|0:0|0:1:1:138:0:0:1:69.00|69.00:0|0:.:0:.:0:0|87:0|93:0 0|0:0|0:1:1:176:0:0:0:88.00|88.00:0|0:.:0:.:0:0|119:0|120:0 +chr21 9548764 GANGSTR_436702 TGCCCTGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9548764;END=9548773;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9549157 GANGSTR_436703 TGACCCTGACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9549157;END=9549168;PERIOD=6;NSKIP=0;NFILT=0;DP=469;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:149:0:0:3:74.50|74.50:0|0:.:0:.:0:0|97;6|1;28|1:0|98:0 0|0:0|0:1:1:164:0:0:1:82.00|82.00:0|0:.:0:.:0:0|116:0|117:0 0|0:0|0:1:1:156:0:0:1:78.00|78.00:0|0:.:0:.:0:0|109;28|1:0|113:0 +chr21 9549337 GANGSTR_436704 GCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9549337;END=9549346;PERIOD=5;NSKIP=0;NFILT=0;DP=432;DSNP=0;DSTUTTER=0;DFLANKINDEL=17;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:127:0:0:6:63.50|63.50:0|0:.:0:.:0:-16|4;0|95:0|95:0 0|0:0|0:1:1:146:0:0:9:73.00|73.00:0|0:.:0:.:0:-16|7;-5|1;0|101:0|100:0 0|0:0|0:1:1:159:0:0:2:79.50|79.50:0|0:.:0:.:0:-16|1;0|119:0|119:0 +chr21 9550373 GANGSTR_436705 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.82;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9550373;END=9550392;PERIOD=4;NSKIP=0;NFILT=0;DP=628;DSNP=0;DSTUTTER=21;DFLANKINDEL=1;AN=6;REFAC=6;DSLEN=5.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:199:0:9:0:85.51|113.49:0|0:.:0:.:0:-17|4;0|104;4|2;8|1:0|103;4|2;8|1:0 0|0:0|0:1:1:193:0:1:0:89.00|104.00:0|0:.:0:.:0:0|106:0|103:0 0|0:0|0:1:1:236:0:11:1:120.96|115.04:0|0:.:0:.:0:-17|2;-16|1;-8|1;0|119;4|1;8|1:0|109;4|1;8|1:0 +chr21 9551734 GANGSTR_436706 GATGAAATGATGAAATG GATGAAATGATGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.35;OUTFRAME_UP=0;OUTFRAME_DOWN=0.06;START=9551734;END=9551749;PERIOD=8;NSKIP=0;NFILT=3;BPDIFFS=-3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=1.625,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9553459 GANGSTR_436707 ATGAAATGAA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.22;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=9553459;END=9553468;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9553568 GANGSTR_436708 TGAAATGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9553568;END=9553577;PERIOD=5;NSKIP=0;NFILT=0;DP=646;DSNP=0;DSTUTTER=16;DFLANKINDEL=31;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:199:0:7:16:99.50|99.50:0|0:.:0:.:0:-47|1;-5|2;-3|1;0|134;14|1:0|134:0 0|0:0|0:1:1:208:0:7:10:104.00|104.00:0|0:.:0:.:0:-47|1;-14|1;-3|1;0|142:0|141;5|1:0 0|0:0|0:1:1:239:0:2:5:119.50|119.50:0|0:.:0:.:0:-5|2;0|175:0|174:0 +chr21 9565451 GANGSTR_436710 TATGTATGTATGTATG TATGTATGTGTGTATG . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9565451;END=9565466;PERIOD=4;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9569046 GANGSTR_436711 TATATATATATATATA TATATATTTATATA . . INFRAME_PGEOM=0.79;INFRAME_UP=0.22;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.48;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9569046;END=9569061;PERIOD=2;NSKIP=0;NFILT=2;BPDIFFS=-2;DP=94;DSNP=0;DSTUTTER=26;DFLANKINDEL=9;AN=2;REFAC=1;AC=1;DSLEN=7.0,8.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-2:1:0.5:94:0:26:9:73.38|20.62:0|0:20.28:-10.29:75:-1.95:-11|3;-9|1;-7|2;-5|1;-2|7;0|30;2|16;4|1;6|9:-2|7;0|27;2|17;4|2;6|3:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9573523 GANGSTR_436712 AATCAATCAATCATTAA AATAAATCAATCATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.26;OUTFRAME_UP=0;OUTFRAME_DOWN=0.05;START=9573523;END=9573534;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=701;DSNP=0;DSTUTTER=0;DFLANKINDEL=65;AN=6;REFAC=5;AC=1;DSLEN=2.5,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:223:0:0:15:111.50|111.50:0|0:9.72:0:.:0:-5|11;0|151:0|144:2 0|1:0|-2:1:0.5:222:0:0:32:189.25|32.75:0|0:10.5:-27.8:212:0:-5|26;0|145:-2|22;0|132:1 0|0:0|0:1:1:256:0:0:18:128.00|128.00:0|0:12.12:0:.:0:-5|17;0|175:0|166:2 +chr21 9573928 GANGSTR_436713 AAACAAACAAACAAC AAACAAACAAAAAAA,AAACAAACAAAAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9573928;END=9573939;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=502;DSNP=0;DSTUTTER=5;DFLANKINDEL=44;AN=6;REFAC=3;AC=1,2;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|2:0|0:1:0.5:159:0:2:12:123.55|35.45:0|0:64.21:-14.28:137:-0.31:-4|1;0|98:-4|1;0|97:0 0|2:0|0:1:0.5:125:0:0:13:103.39|21.61:0|0:32.63:-14.83:114:-1.26:-1|1;0|92:0|90:0 0|1:0|0:1:0.5:218:0:3:19:178.02|39.98:0|0:119.87:-23.75:198:-0.78:-7|1;-4|3;0|145;1|1:-4|3;0|139:0 +chr21 9579664 GANGSTR_436714 TTTGATTTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9579664;END=9579673;PERIOD=5;NSKIP=0;NFILT=0;DP=423;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:118:0:0:2:59.00|59.00:0|0:.:0:.:0:0|90:0|89:0 0|0:0|0:1:1:122:0:0:2:61.00|61.00:0|0:.:0:.:0:0|91:0|91:0 0|0:0|0:1:1:183:0:0:3:91.50|91.50:0|0:.:0:.:0:0|137:0|137:0 +chr21 9583236 GANGSTR_436715 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0;START=9583236;END=9583245;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9584264 GANGSTR_436716 TGAATTTATTTATTT TCAATTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9584267;END=9584278;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=654;DSNP=0;DSTUTTER=2;DFLANKINDEL=7;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|0:0|0:1:0.5:202:0:0:4:85.22|116.78:0|0:173.61:-1.21:195:-0.61:0|156:0|152:0 0|1:0|0:1:0.5:216:0:0:0:133.95|82.05:0|0:260.14:-3.54:200:-0.11:0|158:0|155:0 0|1:0|0:1:0.5:236:0:2:3:139.85|96.15:0|0:315.75:-2.56:217:-2.13:0|173:0|167:0 +chr21 9585397 GANGSTR_436717 TGGAGTGGAG TGCAGTGGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9585397;END=9585406;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=451;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:128:0:0:1:108.36|19.64:0|0:14.69:-18.39:111:-1.67:-19|1;0|90:0|90:0 0|1:0|0:1:0.5:142:0:0:1:122.99|19.01:0|0:13.29:-21.81:128:-1.19:0|103:0|102:0 0|1:0|0:1:0.5:181:0:0:1:161.46|19.54:0|0:5.43:-31.31:168:-1.05:0|137;3|1:0|137:0 +chr21 9590707 GANGSTR_436718 TGTTTGTTTGTT TGTTTGTTTGCT . . INFRAME_PGEOM=0.99;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9590707;END=9590718;PERIOD=4;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9593840 GANGSTR_436719 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9593840;END=9593851;PERIOD=3;NSKIP=0;NFILT=0;DP=563;DSNP=0;DSTUTTER=0;DFLANKINDEL=13;AN=6;REFAC=6;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:172:0:0:4:105.97|66.03:0|0:.:0:.:0:0|133:0|126:0 0|0:0|0:1:1:186:0:0:2:105.58|80.42:0|0:.:0:.:0:0|138:0|133:0 0|0:0|0:1:1:205:0:0:7:102.50|102.50:0|0:.:0:.:0:0|154:0|143:0 +chr21 9649917 GANGSTR_436720 TATCTTATCT . . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9649917;END=9649926;PERIOD=5;NSKIP=0;NFILT=0;DP=514;DSNP=0;DSTUTTER=43;DFLANKINDEL=13;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:171:0:13:5:85.50|85.50:0|0:.:0:.:0:-5|11;0|100:-10|1;-5|11;0|98:0 0|0:0|0:1:1:137:0:7:6:68.50|68.50:0|0:.:0:.:0:-5|6;0|88:-10|1;-5|6;0|87:0 0|0:0|0:1:1:206:0:23:2:103.00|103.00:0|0:.:0:.:0:-5|22;0|127:-5|22;0|126:0 +chr21 9652274 GANGSTR_436721 TTTGGTTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.07;START=9652274;END=9652288;PERIOD=5;NSKIP=0;NFILT=1;DP=482;DSNP=0;DSTUTTER=0;DFLANKINDEL=39;AN=4;REFAC=4;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:220:0:0:21:110.00|110.00:0|0:.:0:.:0:-21|1;-1|8;0|155;1|9;2|1;3|1:0|163:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:262:0:0:18:131.00|131.00:0|0:.:0:.:0:-25|1;-1|14;0|185;1|2:0|186:0 +chr21 9663930 GANGSTR_436722 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9663930;END=9663941;PERIOD=4;NSKIP=0;NFILT=0;DP=463;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:176:0:0:1:26.02|149.98:0|0:.:0:.:0:0|104:0|98:0 0|0:0|0:1:1:124:0:0:1:62.00|62.00:0|0:.:0:.:0:0|77:0|73:0 0|0:0|0:1:1:163:0:0:2:26.01|136.99:0|0:.:0:.:0:0|105:0|100:0 +chr21 9668173 GANGSTR_436723 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.38;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.05;START=9668173;END=9668182;PERIOD=5;NSKIP=1;NFILT=1;DP=168;DSNP=0;DSTUTTER=1;DFLANKINDEL=22;AN=2;REFAC=2;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:168:0:1:22:84.00|84.00:0|0:.:0:.:0:-7|4;-6|1;-1|2;0|117;1|3;3|2:0|118:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9669543 GANGSTR_436724 TGTGTGTGTGTGTAA TGTGTGTGTGTGTAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9669543;END=9669554;PERIOD=2;NSKIP=0;NFILT=1;BPDIFFS=0;DP=420;DSNP=0;DSTUTTER=2;DFLANKINDEL=43;AN=4;REFAC=2;AC=2;DSLEN=6.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:226:0:0:26:157.42|68.58:0|0:197.94:-9.28:207:-0.36:0|196:0|185:0 0|1:0|0:1:0.5:194:0:2:17:131.45|62.55:0|0:179.22:-6.64:177:-0.13:-2|1;0|163:-2|1;0|148:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9671208 GANGSTR_436725 ATTTTATTTTG ATTTTATTTTA,ATTTTATTTTAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.74;OUTFRAME_UP=0.25;OUTFRAME_DOWN=0.02;START=9671208;END=9671217;PERIOD=5;NSKIP=1;NFILT=2;BPDIFFS=0,1;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0;DSLEN=2.0,2.2 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9676788 GANGSTR_436726 AAAATAAAATAAAAT AAATAAAATAAAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.77;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.1;START=9676788;END=9676802;PERIOD=5;NSKIP=2;NFILT=0;BPDIFFS=-1;DP=159;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;DSLEN=2.8,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. 0|1:0|-1:1:0.5:159:0:0:5:100.35|58.65:0|0:109.47:-3.86:118:-0.08:-3|2;-2|1;-1|32;0|62:-1|33;0|62:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9694646 GANGSTR_436727 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9694646;END=9694653;PERIOD=4;NSKIP=0;NFILT=0;DP=399;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:134:0:0:0:67.00|67.00:0|0:.:0:.:0:0|105:0|103:0 0|0:0|0:1:1:114:0:0:0:57.00|57.00:0|0:.:0:.:0:0|92:0|88:0 0|0:0|0:1:1:151:0:0:1:75.50|75.50:0|0:.:0:.:0:0|105:0|102:0 +chr21 9701766 GANGSTR_436728 CAGTTGTTGTTGTTTTTT CGGTTGTTGTTTTTTTTTC . . INFRAME_PGEOM=0.51;INFRAME_UP=0.01;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0.19;OUTFRAME_DOWN=0.01;START=9701768;END=9701779;PERIOD=3;NSKIP=0;NFILT=3;BPDIFFS=1;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=4.0,4.333333333333333 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9704260 GANGSTR_436729 CTGCGCCTGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9704260;END=9704271;PERIOD=6;NSKIP=0;NFILT=1;DP=535;DSNP=0;DSTUTTER=0;DFLANKINDEL=55;AN=4;REFAC=4;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:222:0:0:28:47.54|174.46:0|0:.:0:.:0:-11|2;-10|7;0|163:0|135:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:313:0:0:27:93.76|219.24:0|0:.:0:.:0:-29|1;-11|2;-9|2;0|230;1|1;4|1:0|198:0 +chr21 9706341 GANGSTR_436730 TTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.35;OUTFRAME_UP=0;OUTFRAME_DOWN=0.04;START=9706341;END=9706352;PERIOD=3;NSKIP=0;NFILT=2;DP=234;DSNP=0;DSTUTTER=29;DFLANKINDEL=7;AN=2;REFAC=2;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 0|0:0|0:1:1:234:0:29:7:119.59|114.41:0|0:.:0:.:0:-4|7;-3|14;-1|1;0|144;3|7:-3|18;0|139;3|7:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9707598 GANGSTR_436731 TTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTCGTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.01;INFRAME_DOWN=0.3;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9707598;END=9707618;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=424;DSNP=0;DSTUTTER=117;DFLANKINDEL=24;AN=6;REFAC=3;AC=3;DSLEN=7.0,8.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|3:1:0.5:130:0:32:7:89.28|40.72:0|0:99.67:-4.86:130:-0.17:-6|9;-3|21;0|16;3|33:-6|2;-3|18;0|15;3|33:1 0|1:0|3:1:0.5:98:0:40:4:66.55|31.45:0|0:91.75:-3.45:98:-1.57:-6|5;-3|27;0|9;3|20:-6|2;-3|23;0|9;3|20:1 0|1:0|3:1:0.5:196:0:45:13:119.00|77.00:0|0:122.32:-2.69:196:-0.77:-6|13;-3|30;0|30;3|56:-3|29;0|29;3|56:1 +chr21 9719169 GANGSTR_436732 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9719169;END=9719180;PERIOD=4;NSKIP=0;NFILT=0;DP=702;DSNP=0;DSTUTTER=19;DFLANKINDEL=12;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:258:0:2:5:144.90|113.10:0|0:.:0:.:0:-4|1;0|147;19|1:-4|1;0|144:0 0|0:0|0:1:1:179:0:7:5:98.52|80.48:0|0:.:0:.:0:-4|4;-3|1;0|98:-4|5;0|93:0 0|0:0|0:1:1:265:0:10:2:132.50|132.50:0|0:.:0:.:0:-4|10;0|155:-4|10;0|151:0 +chr21 9739491 GANGSTR_436733 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9739491;END=9739500;PERIOD=5;NSKIP=0;NFILT=0;DP=551;DSNP=0;DSTUTTER=0;DFLANKINDEL=14;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:204:0:0:5:128.47|75.53:0|0:.:0:.:0:-26|1;0|145:0|145:0 0|0:0|0:1:1:166:0:0:7:83.00|83.00:0|0:.:0:.:0:0|105:0|103:0 0|0:0|0:1:1:181:0:0:2:90.50|90.50:0|0:.:0:.:0:0|118:0|117:0 +chr21 9742909 GANGSTR_436734 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9742909;END=9742920;PERIOD=4;NSKIP=0;NFILT=0;DP=190;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:70:0:0:0:42.00|28.00:0|0:.:0:.:0:0|40:0|38:0 0|0:0|0:1:1:40:0:0:0:20.50|19.50:0|0:.:0:.:0:0|27:0|25:0 0|0:0|0:1:1:80:0:0:1:51.50|28.50:0|0:.:0:.:0:0|47:0|43:0 +chr21 9743363 GANGSTR_436735 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9743363;END=9743374;PERIOD=4;NSKIP=0;NFILT=0;DP=187;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:67:0:0:1:38.00|29.00:0|0:.:0:.:0:0|41:0|40:0 0|0:0|0:1:1:58:0:0:1:38.53|19.47:0|0:.:0:.:0:0|37:0|36:0 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|42:0|40:0 +chr21 9745317 GANGSTR_436736 TAAATTAAATTAAATCT TAAATTAAATTAAATCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9745317;END=9745331;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=410;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:129:0:0:1:107.05|21.95:0|0:28.59:-15.54:117:-1.49:-21|1;0|81:0|81:0 0|1:0|0:1:0.5:138:0:0:0:114.50|23.50:0|0:31.8:-16.98:123:-0.11:0|81:0|81:0 0|1:0|0:1:0.5:143:0:0:0:115.50|27.50:0|0:48.31:-15.07:128:-0.11:0|90:0|90:0 +chr21 9746397 GANGSTR_436737 TCAGCCTGCCTGCCT TCAGACTGCCTGCCT,TTAGCCTGCCTGCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9746400;END=9746411;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=247;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=6;REFAC=3;AC=2,1;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:83:0:0:0:63.49|19.51:0|0:55.41:-6.09:80:-1.36:0|66:0|66:0 0|1:0|0:1:0.5:69:0:0:0:42.75|26.25:0|0:106.12:-1.27:69:-0.11:0|54:0|53:0 0|2:0|0:1:0.5:95:0:0:0:79.48|15.52:0|0:12.66:-11.21:92:-2.02:0|81:0|80:0 +chr21 9750137 GANGSTR_436738 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.64;INFRAME_UP=0.1;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9750137;END=9750156;PERIOD=5;NSKIP=0;NFILT=0;DP=428;DSNP=0;DSTUTTER=47;DFLANKINDEL=28;AN=6;REFAC=6;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:149:0:17:11:74.50|74.50:0|0:.:0:.:0:-14|1;-2|3;0|52;3|1;5|5;15|2;30|1:0|50;5|5;15|2;30|1:0 0|0:0|0:1:1:107:0:8:6:53.50|53.50:0|0:.:0:.:0:-2|2;0|41;5|6:0|41;5|5:0 0|0:0|0:1:1:172:0:22:11:86.00|86.00:0|0:.:0:.:0:-14|2;-2|3;0|54;3|1;5|10;15|4;25|1:0|54;5|9;15|4;25|1:0 +chr21 9750998 GANGSTR_436739 TTATTATTATTATTA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9750998;END=9751012;PERIOD=3;NSKIP=0;NFILT=0;DP=339;DSNP=0;DSTUTTER=3;DFLANKINDEL=21;AN=6;REFAC=6;DSLEN=5.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:130:0:2:6:65.00|65.00:0|0:.:0:.:0:-3|4;0|79:-3|1;0|72:0 0|0:0|0:1:1:80:0:1:4:38.02|41.98:0|0:.:0:.:0:-3|3;0|58:-3|1;0|55:0 0|0:0|0:1:1:129:0:0:11:64.50|64.50:0|0:.:0:.:0:-3|6;0|74:0|71:0 +chr21 9753490 GANGSTR_436740 AGAAAGAAAGAA AGAAACAAAGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9753490;END=9753501;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=309;DSNP=0;DSTUTTER=2;DFLANKINDEL=23;AN=6;REFAC=5;AC=1;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:113:0:0:7:56.50|56.50:0|0:11.5:0:.:0:0|92:0|86:0 0|1:0|0:1:0.5:80:0:2:8:65.33|14.67:0|0:8.51:-9.75:66:-0.15:0|57:0|53:0 0|0:0|0:1:1:116:0:0:8:58.00|58.00:0|0:26.98:0:.:0:0|91:0|84:0 +chr21 9757375 GANGSTR_436741 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9757375;END=9757382;PERIOD=4;NSKIP=0;NFILT=0;DP=137;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|30:0|27:0 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|26:0|23:0 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:0 +chr21 9760484 GANGSTR_436742 AAAGGAAAGG AAAGAAAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.04;START=9760484;END=9760493;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=128;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:41:0:0:1:31.99|9.01:0|0:16.07:-3.72:37:-1.42:-1|1;0|29:0|29:0 0|1:0|0:1:0.5:30:0:0:1:21.95|8.05:0|0:11.45:-2.18:24:-0.57:0|19:0|18:0 0|1:0|0:1:0.5:57:0:0:2:44.97|12.03:0|0:18.99:-5.47:51:-1.68:-1|2;0|39:0|39:0 +chr21 9826648 GANGSTR_436743 CGCGCGCGCGCGCGCG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826648;END=9826663;PERIOD=2;NSKIP=0;NFILT=0;DP=14811;DSNP=0;DSTUTTER=2407;DFLANKINDEL=591;AN=6;REFAC=6;DSLEN=8.0,8.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:4607:0:868:182:2303.50|2303.50:0|0:.:0:.:0:-40|1;-26|1;-24|3;-22|1;-21|1;-20|2;-19|1;-17|1;-16|1;-12|2;-10|2;-8|3;-7|3;-5|1;-4|2;-3|1;-2|821;-1|7;0|2175;1|2;2|2:-4|3;-2|738;0|1893:0 0|0:0|0:1:1:5434:0:1431:226:3092.98|2341.02:0|0:.:0:.:0:-43|1;-34|1;-31|1;-28|1;-24|1;-19|3;-18|1;-17|1;-15|5;-13|1;-11|1;-10|3;-9|1;-8|2;-6|1;-5|3;-4|17;-3|5;-2|1366;-1|17;0|1931;1|5;2|1;4|1;34|1:-4|15;-2|1231;0|1644:0 0|0:0|0:1:1:4770:0:108:183:2385.00|2385.00:0|0:.:0:.:0:-26|1;-24|1;-23|1;-20|1;-18|1;-17|1;-16|1;-9|2;-7|1;-6|1;-4|6;-2|101;-1|7;0|2922;1|3;7|1:-4|3;-2|88;0|2573:0 +chr21 9826815 GANGSTR_436744 CGCCCCGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826815;END=9826824;PERIOD=5;NSKIP=0;NFILT=0;DP=25065;DSNP=0;DSTUTTER=2;DFLANKINDEL=457;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:7946:0:1:124:3973.00|3973.00:0|0:.:0:.:0:-13|1;-11|3;-9|1;-8|1;-1|2;0|5744;1|7;2|1;10|1;24|1:0|5685:0 0|0:0|0:1:1:8631:0:0:209:4315.50|4315.50:0|0:.:0:.:0:-4|2;-1|1;0|6055;1|17:0|5974:0 0|0:0|0:1:1:8488:0:1:124:4244.00|4244.00:0|0:.:0:.:0:-46|1;-1|1;0|5996;1|6:-5|1;0|5942:0 +chr21 9826885 GANGSTR_436745 CGCGGCCCGTCCGTCCGTCCGTCCGT CCCGTCCGTCCGT,CGCGGCCCGTCCGTCCGTCCGT . . INFRAME_PGEOM=1;INFRAME_UP=0.33;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.43;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826891;END=9826910;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-13,-4;DP=24093;DSNP=0;DSTUTTER=7039;DFLANKINDEL=3072;AN=6;REFAC=0;AC=3,3;DSLEN=1.75,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|2:-13|-4:1:0.5:7233:0:1943:946:1486.79|5746.21:0|0:2488.66:-inf:6206:-0.13:-52|1;-37|4;-30|2;-26|1;-23|64;-22|1;-19|789;-17|1;-14|4;-13|1;-10|2;-8|282;-7|9;-6|2;-5|17;-4|2046;-2|1;-1|4;0|1211;4|1:-21|1;-17|16;-13|812;-9|45;-8|295;-5|3;-4|1993;0|1177:0.692308 1|2:-13|-4:1:0.5:8471:0:2202:868:1408.74|7062.26:0|0:2853.15:-inf:7315:-0.42:-57|1;-54|1;-48|3;-47|1;-44|2;-37|1;-34|2;-33|5;-29|1;-26|1;-25|1;-24|1;-23|55;-22|1;-21|1;-19|641;-17|7;-16|1;-15|3;-14|2;-13|1;-10|1;-9|2;-8|282;-7|3;-6|1;-5|24;-4|2918;-3|1;-2|1;-1|14;0|1436;1|2;34|1:-17|19;-16|1;-13|666;-9|41;-8|305;-4|2853;0|1365:0.692308 1|2:-13|-4:1:0.5:8389:0:2894:1258:1785.88|6603.12:0|0:2274.98:-inf:7219:-3.61:-57|1;-54|1;-44|3;-43|1;-41|2;-37|1;-35|1;-34|1;-33|4;-30|3;-29|2;-28|3;-25|1;-23|101;-22|1;-19|985;-17|6;-15|1;-14|1;-13|2;-12|1;-11|2;-10|4;-9|2;-8|434;-7|13;-6|1;-5|5;-4|1881;-3|10;-1|14;0|1883;2|1;3|1;6|1:-21|2;-17|28;-13|998;-9|80;-8|434;-5|3;-4|1839;0|1793:0.692308 +chr21 9826996 GANGSTR_436746 CTACCTACCTAC CTACCTTACCTAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0;OUTFRAME_DOWN=0.17;START=9826996;END=9827007;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=32741;DSNP=0;DSTUTTER=4;DFLANKINDEL=428;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.25 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|1:1:0.5:10336:0:3:72:2259.70|8076.30:0|0:19879.7:-inf:9174:-0.8:-39|1;-35|1;-15|1;-14|88;-10|1;-9|4;-8|1;-4|4;-3|1;0|1307;1|5817;4|2;6|1;35|1:0|1257;1|5658:1 0|1:0|1:1:0.5:10997:0:0:69:1627.39|9369.61:0|0:10795.2:-inf:9781:-1.99:-35|1;-14|143;-9|1;-8|1;-4|3;-3|1;-1|1;0|789;1|6817:0|764;1|6611:1 0|1:0|1:1:0.5:11408:0:1:287:2882.26|8525.74:0|0:27489.5:-inf:10132:-0.64:-14|116;-9|1;-4|9;-3|2;-1|1;0|1790;1|6178;3|1;4|1;9|1:-8|1;0|1741;1|6015:1 +chr21 9831992 GANGSTR_436747 TTTCTTTCTTTCTG TTTCTTTCTTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9831992;END=9832003;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=814;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=6;REFAC=0;AC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|1:0|0:1:1:272:0:0:2:166.99|105.01:0|0:219.09:0:.:0:0|181:0|178:0 1|1:0|0:1:1:267:0:0:1:177.50|89.50:0|0:257.6:0:.:0:0|189:0|183:0 1|1:0|0:1:1:275:0:0:2:199.92|75.08:0|0:14.99:0:.:0:0|167;3|1:0|166:0 +chr21 9832495 GANGSTR_436748 CCTGGCTTCCTTCCTTC CTTGGCTTCCTTCCTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9832500;END=9832511;PERIOD=4;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9834403 GANGSTR_436749 ATATATATATATATATATATATATATATATATATATATATATATG ATATATATA,ATATATATATATATATATA . . INFRAME_PGEOM=0.4;INFRAME_UP=0.15;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.17;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=9834403;END=9834446;PERIOD=2;NSKIP=2;NFILT=0;BPDIFFS=-36,-26;DP=147;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;DSLEN=4.0,22.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. 1|2:-36|-26:1:0.5:147:0:2:4:108.23|38.77:0|0:38.94:-8.24:138:0:-36|83;-28|1;-26|18;-13|1;-1|1;1|1:-36|78;-28|1;-26|15:0.277778 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9846534 GANGSTR_436751 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=9846534;END=9846549;PERIOD=4;NSKIP=0;NFILT=0;DP=235;DSNP=0;DSTUTTER=7;DFLANKINDEL=3;AN=6;REFAC=6;DSLEN=4.0,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:83:0:2:1:54.50|28.50:0|0:.:0:.:0:-10|1;0|14:0|14:0 0|0:0|0:1:1:64:0:0:2:39.55|24.45:0|0:.:0:.:0:0|1:.:0 0|0:0|0:1:1:88:0:5:0:44.00|44.00:0|0:.:0:.:0:-12|1;0|18:0|18:0 +chr21 9848341 GANGSTR_436752 GAGTGAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9848341;END=9848352;PERIOD=4;NSKIP=0;NFILT=0;DP=733;DSNP=0;DSTUTTER=0;DFLANKINDEL=27;AN=6;REFAC=6;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:232:0:0:16:116.00|116.00:0|0:.:0:.:0:0|162:0|149:0 0|0:0|0:1:1:227:0:0:2:105.26|121.74:0|0:.:0:.:0:0|167:0|161:0 0|0:0|0:1:1:274:0:0:9:137.00|137.00:0|0:.:0:.:0:0|197:0|185:0 +chr21 9850963 GANGSTR_436753 CACCACACCACG CACCACACCACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9850963;END=9850972;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=634;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:211:0:0:0:92.44|118.56:0|0:283.47:-1.16:190:-0.61:0|156:0|156:0 0|1:0|0:1:0.5:216:0:0:1:106.16|109.84:0|0:316.16:-0.11:193:-0.18:-3|1;0|155:0|154:0 0|1:0|0:1:0.5:207:0:0:0:139.52|67.48:0|0:156.23:-7.09:180:-0.06:0|150:0|150:0 +chr21 9853252 GANGSTR_436754 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9853252;END=9853271;PERIOD=4;NSKIP=0;NFILT=0;DP=956;DSNP=0;DSTUTTER=3;DFLANKINDEL=10;AN=6;REFAC=6;DSLEN=5.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:309:0:0:1:154.50|154.50:0|0:.:0:.:0:-14|1;0|148:0|140:0 0|0:0|0:1:1:312:0:2:4:156.00|156.00:0|0:.:0:.:0:-7|1;-4|1;0|161;4|1:-4|1;0|154:0 0|0:0|0:1:1:335:0:1:5:167.50|167.50:0|0:.:0:.:0:-1|1;0|165:-4|1;0|153:0 +chr21 9859220 GANGSTR_436755 CATACATACATA CATACATACGTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9859220;END=9859231;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=963;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=6;REFAC=5;AC=1;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:337:0:0:1:177.42|159.58:0|0:444.6:0:.:0:0|211:0|204:0 0|0:0|0:1:1:278:0:1:0:133.91|144.09:0|0:414.27:0:.:0:0|193:0|186:0 0|1:0|0:1:0.5:348:0:2:2:250.27|97.73:0|0:31.73:-16.89:337:-1.3:-1|1;0|235:0|228:0 +chr21 9863707 GANGSTR_436756 TTCTCTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9863707;END=9863716;PERIOD=5;NSKIP=0;NFILT=0;DP=928;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:288:0:0:3:144.00|144.00:0|0:.:0:.:0:0|201:0|200:0 0|0:0|0:1:1:312:0:0:0:156.00|156.00:0|0:.:0:.:0:0|213:0|213:0 0|0:0|0:1:1:328:0:0:0:164.00|164.00:0|0:.:0:.:0:0|251:0|251:0 +chr21 9880337 GANGSTR_436757 ATATATATATATATATATATATATTTTTT ATATATATATATATATTTTTTT,ATATATATATATATATATATATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.05;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.35;OUTFRAME_UP=0.17;OUTFRAME_DOWN=0.05;START=9880337;END=9880360;PERIOD=2;NSKIP=0;NFILT=3;BPDIFFS=-7,-6;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0;DSLEN=8.5,12.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9881928 GANGSTR_436758 CCTGCGCCTGCG CCTGTGCCTGCG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.39;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=9881928;END=9881939;PERIOD=6;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9882029 GANGSTR_436759 CACCCCCCTGCGCCTGCG CCCCCCCCCCCCCCCGCGCCTGCG . . INFRAME_PGEOM=0.77;INFRAME_UP=0.02;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.21;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.05;START=9882035;END=9882046;PERIOD=6;NSKIP=0;NFILT=3;BPDIFFS=6;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=2.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9884012 GANGSTR_436760 TTGTTGTTGTTGTTGTTT TTTTTGTTGTTGTTGTTGTTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.78;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.14;START=9884012;END=9884026;PERIOD=3;NSKIP=3;NFILT=0;BPDIFFS=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=5.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9886042 GANGSTR_436761 ATTTTATTTTATTTT ATTTTATTTATTTATTT,ATTTTATTTATTTTTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.01;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.54;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.01;START=9886042;END=9886056;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=2,2;DP=413;DSNP=0;DSTUTTER=0;DFLANKINDEL=39;AN=6;REFAC=3;AC=2,1;DSLEN=3.0,3.4 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|2:1:0.5:103:0:0:12:73.49|29.51:0|0:63.45:-5.2:94:-2.84:0|52;2|17:0|52;2|16:1 0|1:0|2:1:0.5:124:0:0:14:88.91|35.09:0|0:41.84:-6.25:108:-4.43:-1|1;0|43;2|14;5|1:0|44;2|13:1 0|2:0|2:1:0.5:186:0:0:13:158.28|27.72:0|0:10.65:-26.72:162:-2.82:0|92;2|9;5|1:0|92;2|9:1 +chr21 9889282 GANGSTR_436762 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9889282;END=9889291;PERIOD=5;NSKIP=0;NFILT=0;DP=390;DSNP=0;DSTUTTER=0;DFLANKINDEL=19;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:128:0:0:8:64.00|64.00:0|0:.:0:.:0:-14|1;0|92:0|91:0 0|0:0|0:1:1:122:0:0:5:61.00|61.00:0|0:.:0:.:0:0|83:0|81:0 0|0:0|0:1:1:140:0:0:6:70.00|70.00:0|0:.:0:.:0:0|98:0|98:0 +chr21 9893957 GANGSTR_436763 AATTAATTAATTTC AAATAATTAATTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9893957;END=9893968;PERIOD=4;NSKIP=0;NFILT=3;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9894798 GANGSTR_436764 GGTGGTGGTGGTGGT GGTGGTGGTGGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.2;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9894798;END=9894812;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=302;DSNP=0;DSTUTTER=47;DFLANKINDEL=26;AN=6;REFAC=1;AC=5;DSLEN=4.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 1|1:-3|-3:1:1:98:0:26:8:49.00|49.00:0|0:7.43:0:.:0:-6|8;-3|43;0|14:-6|7;-3|40;0|12:0 1|1:-3|-3:1:1:85:0:20:10:42.50|42.50:0|0:6.88:0:.:0:-20|1;-6|1;-3|48;0|17:-6|2;-3|44;0|17:0 0|1:0|-3:1:0.5:119:0:1:8:53.34|65.66:0|0:5.64:0:85:-0.88:-6|1;-3|38;0|41:-6|1;-3|35;0|38:1 +chr21 9898424 GANGSTR_436765 TCTTTCTATTTATTTATTTATT TATTTCTATTTATTTATTTTT,TCTTTCTATTTATTTATTTATTTATT,TCTTTCTATTTATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.87;INFRAME_UP=0.36;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.01;START=9898430;END=9898445;PERIOD=4;NSKIP=0;NFILT=3;BPDIFFS=-1,4,8;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0,0;DSLEN=3.75,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9901273 GANGSTR_436766 ATATATATATAT ATATATATATATATA . . INFRAME_PGEOM=0.36;INFRAME_UP=0.05;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9901273;END=9901284;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3;DP=639;DSNP=0;DSTUTTER=38;DFLANKINDEL=1;AN=6;REFAC=3;AC=3;DSLEN=6.0,7.5 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|3:1:0.5:223:0:17:1:141.36|81.64:0|0:402.02:-4.46:192:-1.03:-22|2;-21|1;-20|1;-19|1;-1|2;0|103;3|33;5|2;9|8;11|1:0|94;3|30;9|8;11|1:1 0|1:0|3:1:0.5:197:0:8:0:127.36|69.64:0|0:290.64:-5.02:163:-1.77:-19|1;-2|1;-1|4;0|94;1|1;3|32;9|4;13|1:-2|1;0|86;3|27;9|2:1 0|1:0|3:1:0.5:219:0:13:0:173.22|45.78:0|0:74.39:-17.21:219:-0.5:-21|1;-20|1;-1|1;0|133;1|2;3|12;7|1;9|8:0|118;1|1;3|11;7|1;9|7:1 +chr21 9905367 GANGSTR_436767 GCCACCACCCACCCACAC GACACCACCCTCCCACAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9905371;END=9905382;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=521;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:159:0:1:1:92.49|66.51:0|0:614.01:-1.25:159:-0.74:0|121:0|119:0 0|1:0|0:1:0.5:169:0:0:0:89.00|80.00:0|0:805.23:-0.27:169:-2.13:0|145:0|145:0 0|1:0|0:1:0.5:193:0:0:0:141.08|51.92:0|0:494.85:-9.95:193:-2.97:0|149:0|145:0 +chr21 9906644 GANGSTR_436768 GCTGGGCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9906644;END=9906653;PERIOD=5;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9907174 GANGSTR_436769 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9907174;END=9907185;PERIOD=2;NSKIP=0;NFILT=0;DP=684;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=6;REFAC=6;DSLEN=6.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:237:0:0:0:124.03|112.97:0|0:.:0:.:0:0|202:0|189:0 0|0:0|0:1:1:228:0:0:0:143.89|84.11:0|0:.:0:.:0:0|197:0|184:0 0|0:0|0:1:1:219:0:0:0:141.88|77.12:0|0:.:0:.:0:0|175:0|160:0 +chr21 9913229 GANGSTR_436770 GCGGGGAGGGAGGGA GTGGGGAGGGAGGGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9913232;END=9913243;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=936;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=6;REFAC=4;AC=2;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:304:0:0:2:118.58|185.42:0|0:10.11:0:.:0:0|212;16|1:0|210:0 1|0:0|0:1:0.5:315:0:0:0:155.36|159.64:0|0:217.6:-0.17:286:0:0|239:0|234:0 1|0:0|0:1:0.5:317:0:0:0:106.09|210.91:0|0:224.02:-9.73:273:-0.36:0|228:0|221:0 +chr21 9914186 GANGSTR_436771 GCAGAGCAGAGC GCAGAGCAGAGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9914186;END=9914195;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=846;DSNP=0;DSTUTTER=0;DFLANKINDEL=12;AN=6;REFAC=3;AC=3;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:254:0:0:4:154.17|99.83:0|0:266.19:-3.85:219:-0.59:0|189:0|186:0 0|1:0|0:1:0.5:327:0:0:7:183.09|143.91:0|0:405.27:-1.72:278:-0.94:0|235:0|230:0 0|1:0|0:1:0.5:265:0:0:1:154.58|110.42:0|0:318.03:-2.4:235:-0.37:0|200:0|199:0 +chr21 9917077 GANGSTR_436772 TATATGTGTGTGTGTGTGTGTGTGTGTG TATATGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTG,TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.38;INFRAME_UP=0.25;INFRAME_DOWN=0.21;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9917081;END=9917104;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,-2,0,4;DP=825;DSNP=0;DSTUTTER=378;DFLANKINDEL=84;AN=6;REFAC=1;AC=1,1,2,1;DSLEN=11.0,14.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 3|1:0|-2:1:0.5:251:0:114:26:135.73|115.27:0|0:5.53:-0.57:234:-0.1:-18|18;-12|1;-4|33;-2|34;0|66;4|7;6|9:-4|33;-2|33;0|34;2|3;4|22;6|8:0.333333 3|4:0|4:1:0.5:260:0:115:25:114.86|145.14:0|0:29.86:-1.58:248:-0.6:-18|22;-4|18;-2|19;0|84;2|15;4|19;6|10:-6|1;-4|19;-2|18;0|31;2|21;4|43;6|12;8|1:1.33333 2|0:-2|0:1:0.5:314:0:149:33:146.79|167.21:0|0:15.8:-0.62:289:0:-18|24;-12|1;-6|1;-4|81;-3|1;-2|32;0|48;1|1;4|15;10|10:-6|1;-4|75;-2|33;0|24;2|2;4|28;10|9:0.333333 +chr21 9923401 GANGSTR_436773 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGT GTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.31;INFRAME_UP=0.39;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9923401;END=9923440;PERIOD=2;NSKIP=2;NFILT=0;BPDIFFS=-8,-8,0,10;DP=294;DSNP=0;DSTUTTER=115;DFLANKINDEL=13;AN=2;REFAC=0;AC=0,1,0,1;DSLEN=16.0,25.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 2|4:-8|10:1:0.5:294:0:115:13:150.71|143.29:0|0:18.59:-0.03:176:-0.35:-23|9;-10|6;-8|28;-6|15;-4|4;-2|2;0|51;2|9;4|1;8|2;10|7;12|1;14|3;18|8:-10|4;-8|28;-6|16;-4|4;0|21;2|4;6|1;8|2;10|5;12|1;14|2;18|8:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9923867 GANGSTR_436774 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.77;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.59;OUTFRAME_UP=0.11;OUTFRAME_DOWN=0.12;START=9923867;END=9923878;PERIOD=4;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9928004 GANGSTR_436775 TATATATATATATATATATATATATATATATATATATATATATATATAT TATATATATATATATATATATATAA,TATATATATATATATATATATATATATATATATTA . . INFRAME_PGEOM=0.28;INFRAME_UP=0.51;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9928004;END=9928051;PERIOD=2;NSKIP=0;NFILT=3;BPDIFFS=-24,-14;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0,0;DSLEN=12.0,24.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9929572 GANGSTR_436776 ATTATTATTATTTCA ATTATTATTATTT . . INFRAME_PGEOM=0.55;INFRAME_UP=0.01;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.66;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9929572;END=9929583;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=532;DSNP=0;DSTUTTER=18;DFLANKINDEL=8;AN=6;REFAC=3;AC=3;DSLEN=3.3333333333333335,4.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-2:1:0.5:164:0:4:1:91.53|72.47:0|0:672.06:-0.95:144:-0.4:-6|4;-2|52;0|67:-6|4;-2|50;0|61:1 0|1:0|-2:1:0.5:166:0:7:2:89.56|76.44:0|0:586.66:-0.53:133:-0.79:-6|4;-2|50;0|63;3|1:-6|4;-2|51;0|56;3|1:1 0|1:0|-2:1:0.5:202:0:7:5:124.76|77.24:0|0:628.09:-3.58:161:0:-6|6;-2|50;0|85:-6|5;-2|50;0|79:1 +chr21 9942076 GANGSTR_436777 TTTCTCTTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9942076;END=9942087;PERIOD=6;NSKIP=0;NFILT=0;DP=913;DSNP=0;DSTUTTER=0;DFLANKINDEL=27;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:320:0:0:10:159.78|160.22:0|0:.:0:.:0:-3|1;0|222:0|220:0 0|0:0|0:1:1:277:0:0:8:126.74|150.26:0|0:.:0:.:0:0|195:0|196:0 0|0:0|0:1:1:316:0:0:9:190.11|125.89:0|0:.:0:.:0:0|224:0|219:0 +chr21 9945741 GANGSTR_436778 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.71;INFRAME_UP=0.31;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.5;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=9945741;END=9945774;PERIOD=2;NSKIP=0;NFILT=2;BPDIFFS=-4;DP=366;DSNP=0;DSTUTTER=72;DFLANKINDEL=50;AN=2;REFAC=1;AC=1;DSLEN=15.0,17.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-4:1:0.5:366:0:72:50:201.94|164.06:0|0:63.84:-3.49:211:-1.08:-44|1;-40|1;-26|1;-16|4;-15|1;-10|1;-7|2;-6|9;-4|73;-2|20;-1|2;0|63;2|33;4|9;5|1:-16|3;-10|1;-6|8;-4|48;-2|11;0|55;2|31;4|6:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. +chr21 9951417 GANGSTR_436779 AAAATAAAATAAAAT AAATAAAATAAAAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.01;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.82;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.04;START=9951417;END=9951431;PERIOD=5;NSKIP=1;NFILT=0;BPDIFFS=-1;DP=617;DSNP=0;DSTUTTER=6;DFLANKINDEL=31;AN=4;REFAC=2;AC=2;DSLEN=2.8,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-1:1:0.5:308:0:2:21:217.52|90.48:0|0:108.94:-12.72:262:-2.91:-2|9;-1|45;0|156;1|3;4|2:-11|2;-1|56;0|157:1 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:. 0|1:0|-1:1:0.5:309:0:4:10:213.55|95.45:0|0:121.23:-13.74:247:-1.1:-1|49;0|136;1|1;3|4;4|1:-11|3;-5|1;-1|50;0|135:1 +chr21 9953134 GANGSTR_436780 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9953134;END=9953145;PERIOD=2;NSKIP=0;NFILT=0;DP=1397;DSNP=0;DSTUTTER=2;DFLANKINDEL=25;AN=6;REFAC=6;DSLEN=6.0,6.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:474:0:0:10:327.02|146.98:0|0:.:0:.:0:0|383:0|340:0 0|0:0|0:1:1:465:0:1:9:333.62|131.38:0|0:.:0:.:0:-2|1;0|380:-2|1;0|342:0 0|0:0|0:1:1:458:0:1:6:262.49|195.51:0|0:.:0:.:0:0|363:0|338:0 +chr21 9966562 GANGSTR_436781 AAGATAAGAT . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9966562;END=9966571;PERIOD=5;NSKIP=0;NFILT=0;DP=461;DSNP=0;DSTUTTER=4;DFLANKINDEL=7;AN=6;REFAC=6;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:158:0:1:1:41.51|116.49:0|0:.:0:.:0:0|103:-5|1;0|103:0 0|0:0|0:1:1:137:0:1:2:68.50|68.50:0|0:.:0:.:0:-5|1;0|102:-5|1;0|101:0 0|0:0|0:1:1:166:0:2:4:50.52|115.48:0|0:.:0:.:0:-5|2;0|113:-5|2;0|111:0 +chr21 9971001 GANGSTR_436782 CGTTTATTTATTTA CATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9971003;END=9971014;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=1026;DSNP=0;DSTUTTER=0;DFLANKINDEL=11;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:355:0:0:4:272.55|82.45:0|0:162.99:-28.21:314:-0.6:0|251:0|240:0 0|1:0|0:1:0.5:347:0:0:3:255.08|91.92:0|0:198.94:-21.58:301:-0.24:0|253:0|245:0 0|1:0|0:1:0.5:324:0:0:4:250.00|74.00:0|0:145.93:-25.9:291:-0.34:0|226:0|212:0 +chr21 9973013 GANGSTR_436783 AAATAAAATAAAATA ACATAAATAAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=9973013;END=9973027;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=1036;DSNP=0;DSTUTTER=0;DFLANKINDEL=16;AN=6;REFAC=3;AC=3;DSLEN=2.8,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|-1:1:0.5:352:0:0:2:290.18|61.82:0|0:421.94:-38.47:330:-0.35:-1|42;0|210:-1|41;0|210:1 0|1:0|-1:1:0.5:340:0:0:5:274.21|65.79:0|0:322.74:-35.35:297:-0.38:-1|37;0|185:-1|35;0|182:1 0|1:0|-1:1:0.5:344:0:0:9:284.72|59.28:0|0:304.23:-40.57:306:-0.13:-14|1;-1|41;0|195:-1|34;0|195:1 +chr21 9983433 GANGSTR_436784 ATTTATTTATTT ATTTAGTTATTT,ATTTAGTTGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9983433;END=9983444;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=335;DSNP=0;DSTUTTER=1;DFLANKINDEL=31;AN=6;REFAC=2;AC=3,1;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:126:0:0:16:52.42|73.58:0|0:6.88:-1.41:104:-0.08:0|61:0|52:0 1|2:0|0:1:0.5:73:0:1:6:48.23|24.77:0|0:21.38:-2.5:62:-0.36:-1|1;0|22:0|18:0 0|1:0|0:1:0.5:136:0:0:9:48.82|87.18:0|0:87.48:-4.11:95:-0.44:0|59:0|49:0 +chr21 9984116 GANGSTR_436785 TTTATTTTAT TTAATTTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0;START=9984116;END=9984125;PERIOD=5;NSKIP=3;NFILT=0;BPDIFFS=0;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;AC=0;DSLEN=2.0,2.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 9996415 GANGSTR_436786 AATTTAATTTAATTT AATTTAATTAAATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9996415;END=9996429;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=545;DSNP=0;DSTUTTER=0;DFLANKINDEL=21;AN=6;REFAC=4;AC=2;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:204:0:0:6:70.00|134.00:0|0:44.42:0:.:0:0|130:0|129:0 0|1:0|0:1:0.5:166:0:0:4:130.89|35.11:0|0:75.37:-15.11:150:-5.54:0|103:0|103:0 0|1:0|0:1:0.5:175:0:0:11:135.98|39.02:0|0:24.6:-14.68:157:-7.94:0|104:0|104:0 +chr21 9998029 GANGSTR_436787 TATTTATTTATT . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9998029;END=9998040;PERIOD=4;NSKIP=0;NFILT=3;DP=0;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=0;REFAC=0;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 .:.:.:.:.:.:.:.:.:.:.:.:.:.:.:.:0 +chr21 10000323 GANGSTR_436788 TTATTTATTTATTTATTTATTTAC TTATTTATTTATTTAT . . INFRAME_PGEOM=0.45;INFRAME_UP=0.01;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0;OUTFRAME_DOWN=0.03;START=10000323;END=10000342;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=1381;DSNP=0;DSTUTTER=191;DFLANKINDEL=38;AN=6;REFAC=5;AC=1;DSLEN=3.0,5.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:469:0:75:11:247.70|221.30:0|0:240.22:0:.:0:-9|3;-8|60;-4|1;-1|6;0|200;8|4:-8|63;-4|2;0|198;8|3:2 0|0:0|0:1:1:408:0:70:7:195.88|212.12:0|0:167.27:0:.:0:-32|1;-9|4;-8|59;0|176;1|1;8|2:-8|60;0|164;8|1:2 0|1:0|-8:1:0.5:504:0:46:20:308.10|195.90:0|0:8.13:-6.36:504:-1.45:-16|1;-9|9;-8|86;-4|1;-1|3;0|206;1|1;8|6;12|2:-8|103;-4|2;0|187;4|2;8|2;12|3:1 +chr21 10004111 GANGSTR_436789 GCGTTTTCTTTCTTTC GTGTTTTCTTTCTTTC . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10004115;END=10004126;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=1400;DSNP=0;DSTUTTER=1;DFLANKINDEL=77;AN=6;REFAC=5;AC=1;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|0:0|0:1:1:447:0:0:23:258.52|188.48:0|0:201.85:0:.:0:-4|4;0|328:0|309:0 0|0:0|0:1:1:455:0:0:27:255.32|199.68:0|0:321.55:0:.:0:-4|1;0|323:0|300:0 0|1:0|0:1:0.5:498:0:1:27:400.64|97.36:0|0:102.77:-52.97:422:-0.9:-7|1;-4|8;0|376:-4|1;0|352:0 +chr21 10012942 GANGSTR_436790 TATTTATTTATTAC TATTTATTTATTAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10012942;END=10012953;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=1211;DSNP=0;DSTUTTER=0;DFLANKINDEL=35;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:415:0:0:12:328.51|86.49:0|0:167.9:-37.52:376:-1.66:0|292:0|284:0 0|1:0|0:1:0.5:367:0:0:8:268.23|98.77:0|0:230.13:-21.01:323:-2.04:0|272:0|270:0 0|1:0|0:1:0.5:429:0:0:15:319.45|109.55:0|0:237.82:-27.85:376:-0.34:0|309:0|300:0 +chr21 10028326 GANGSTR_436791 CTTTCTTTCTTTTCTGT CTTTCTTTCTTTTCTGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10028326;END=10028337;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=882;DSNP=0;DSTUTTER=0;DFLANKINDEL=67;AN=6;REFAC=3;AC=3;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:300:0:0:19:134.40|165.60:0|0:392.73:-1.32:246:-1.04:0|211:0|194:0 0|1:0|0:1:0.5:281:0:0:21:127.54|153.46:0|0:367.99:-1.01:228:-0.38:0|194:0|175:0 0|1:0|0:1:0.5:301:0:0:27:144.07|156.93:0|0:462.25:-0.37:262:-1.89:0|230:0|218:0 +chr21 10029397 GANGSTR_436792 AAAGAAAGAAAG AAAGAAAGAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10029397;END=10029408;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=417;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=6;REFAC=2;AC=4;DSLEN=3.0,3.0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:TRDS 0|1:0|0:1:0.5:156:0:0:2:40.60|115.40:0|0:83.77:-10.07:137:-1.42:0|110:0|105:0 1|1:0|0:1:1:128:0:0:1:64.00|64.00:0|0:32.2:0:.:0:0|80:0|79:0 0|1:0|0:1:0.5:133:0:0:1:27.83|105.17:0|0:46.48:-13.06:116:-1.09:0|94:0|92:0 diff --git a/trtools/testsupport/sample_vcfs/associaTR/ap1_multi_dosages.tsv.gz b/trtools/testsupport/sample_vcfs/associaTR/ap1_multi_dosages.tsv.gz index 1955d88c..0736a410 100644 Binary files a/trtools/testsupport/sample_vcfs/associaTR/ap1_multi_dosages.tsv.gz and b/trtools/testsupport/sample_vcfs/associaTR/ap1_multi_dosages.tsv.gz differ diff --git a/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz b/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz index 87413c2d..b17c33c2 100644 Binary files a/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz and b/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz differ diff --git a/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz.tbi b/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz.tbi index 917362af..28cd42c9 100644 Binary files a/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz.tbi and b/trtools/testsupport/sample_vcfs/associaTR/many_samples_multiallelic_dosages.vcf.gz.tbi differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_imputed_withap.vcf.gz b/trtools/testsupport/sample_vcfs/beagle/beagle_imputed_withap.vcf.gz new file mode 100644 index 00000000..bc946bc4 Binary files /dev/null and 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a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz new file mode 100644 index 00000000..578c0f9a Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz.tbi b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz.tbi new file mode 100644 index 00000000..1d04ea49 Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_duplocus.vcf.gz.tbi differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz new file mode 100644 index 00000000..1494141d Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz.tbi b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz.tbi new file mode 100644 index 00000000..054fb6fa Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_missinginfoheader.vcf.gz.tbi differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz new file mode 100644 index 00000000..9ee2c18f Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz differ diff --git a/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz.tbi b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz.tbi new file mode 100644 index 00000000..3ee9c16f Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/beagle_refpanel_nostrs.vcf.gz.tbi differ diff --git a/trtools/testsupport/sample_vcfs/beagle/hipstr_imputed.vcf.gz.tbi b/trtools/testsupport/sample_vcfs/beagle/hipstr_imputed.vcf.gz.tbi new file mode 100644 index 00000000..39c30a7a Binary files /dev/null and b/trtools/testsupport/sample_vcfs/beagle/hipstr_imputed.vcf.gz.tbi differ diff --git a/trtools/testsupport/utils.py b/trtools/testsupport/utils.py index b3ccd4af..c266b88f 100644 --- a/trtools/testsupport/utils.py +++ b/trtools/testsupport/utils.py @@ -9,6 +9,10 @@ def _make_info_dict(info): d = {} for pair in info.split(';'): + if '=' not in pair: # happens for INFO fields with Number=0 like IMP + k = pair + d[k] = None + continue k, v = pair.split('=') vals = np.array(v.split(',')) try: @@ -33,19 +37,23 @@ def _make_format_list(fmt): # fname2 should be the control file # allow reordering of header lines def assert_same_vcf(fname1, fname2, info_ignore = set(), - format_ignore = set()): + format_ignore = set(), + max_lines_to_compare = np.inf): open_fn = open if fname1[-3:] == '.gz': open_fn = gzip.open print(fname1, fname2) headers1 = set() headers2 = set() + lines_processed = 0 with open_fn(fname1, mode='rt') as file1, open_fn(fname2, mode='rt') as file2: iter1 = iter(file1) iter2 = iter(file2) failed = False while True: + if lines_processed >= max_lines_to_compare: return line1, line2 = _grab_line_for_assertion(iter1, iter2) + lines_processed += 1 if line1[0] != '#': raise ValueError('Output VCF header truncated abruptly') if line1[1] != '#' and line2[1] == '#': @@ -102,6 +110,7 @@ def assert_same_vcf(fname1, fname2, info_ignore = set(), format_ignore_idxs = set() while True: linenum += 1 + lines_processed += 1 lines = _grab_line_for_assertion(iter1, iter2) if lines is None: return @@ -185,6 +194,7 @@ def assert_same_vcf(fname1, fname2, info_ignore = set(), ' at line ' + str(linenum) + ' at sample #' + sample_num + ' at field ' + str(count + 1) + '\nOutput: ' + str(f1) + '\nControl: ' + str(f2)) + if lines_processed >= max_lines_to_compare: return # fname1 should be the output file diff --git a/trtools/utils/tests/test_trharmonizer.py b/trtools/utils/tests/test_trharmonizer.py index 1f2a9542..a23aa42e 100644 --- a/trtools/utils/tests/test_trharmonizer.py +++ b/trtools/utils/tests/test_trharmonizer.py @@ -36,14 +36,18 @@ def __init__(self, if gts is not None: self.genotype = types.SimpleNamespace() self._gts = np.array(gts) - self._gts = np.concatenate( - (self._gts, np.zeros((self._gts.shape[0], 1))), - axis=1 + if len(self._gts)>0: + self._gts = np.concatenate( + (self._gts, np.zeros((self._gts.shape[0], 1))), + axis=1 ) # add the phasing axis, we're not testing that here self.genotype.array = lambda: self._gts + self.genotype.n_samples = len(gts) else: self.genotype = None + def format(self, key): + return self.FORMAT.get(key, None) # Set up dummy VCF records which are just lists of genotypes dummy_record_gts = [ @@ -60,6 +64,39 @@ def get_dummy_record(): alt=("CAGCAGCAGCAG", "CAGCAGCAGCAGCAGCAG") ) +def get_dummy_record_empty(): + return DummyCyvcf2Record( + gts = [], + ref="CAGCAGCAG", + alt=("CAGCAGCAGCAG", "CAGCAGCAGCAGCAGCAG") + ) + +dummy_record_diploid = [ + [0, 1], + [1, 1], + [1, 1], + [1, 2], + [2, 2], + [0, 0]] +def get_dummy_record_diploid(): + return DummyCyvcf2Record( + gts=dummy_record_diploid, #last sample is haploid + ref="CAGCAGCAG", + alt=("CAGCAGCAGCAG", "CAGCAGCAGCAGCAGCAG") + ) + +dummy_record_gts_allsamelen = [ + [0, 0], + [0, 0], + [0, 1], + [1, 1]] +def get_dummy_record_gts_allsamelen(): + return DummyCyvcf2Record( + gts=dummy_record_gts_allsamelen, + ref="CAGCAGCAG", + alt=["CAGCAACAG"] + ) + triploid_gts = np.array([ [0, 0, -2], [0, 0, -2], @@ -260,8 +297,7 @@ def test_TRRecord_full_alleles(): 5: 5 } - -def test_TRRecord_GetGenotypes(): +def test_TRRecord_GetGenotypes_Dosages(): dummy_record = get_dummy_record() # Test good example ref_allele = dummy_record.REF @@ -275,12 +311,66 @@ def test_TRRecord_GetGenotypes(): [ref_allele, '.']] true_gts = np.array(true_gts) true_len_gts = np.array([[3, 4], [4, 4], [4, 4], [4, 6], [6, 6], [3, -1]]) + true_bestguess_dosages = np.array([7, 8, 8, 10, 12, 3]) + true_bestguess_norm_dosages = 2*np.array([1/6, 1/3, 1/3, 2/3, 1, np.nan]) assert np.all(rec.GetGenotypeIndicies()[:, :-1] == np.array(dummy_record_gts)) assert np.all(rec.GetLengthGenotypes()[:, :-1] == true_len_gts) assert np.all(rec.GetStringGenotypes()[:, :-1] == true_gts) + assert np.all(rec.GetDosages() == true_bestguess_dosages) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.bestguess) == + true_bestguess_dosages) + + # Test empty + empty_record = get_dummy_record_empty() + rec = trh.TRRecord(empty_record, empty_record.REF, empty_record.ALT, "CAG", "", None) + assert rec.GetDosages() is None + + # Test all ref + allsamelen_record = get_dummy_record_gts_allsamelen() + allsamelen_record.FORMAT["AP1"] = np.array([[0], [0], [0], [0]]) + allsamelen_record.FORMAT["AP2"] = np.array([[0], [0], [0], [0]]) + rec = trh.TRRecord(allsamelen_record, allsamelen_record.REF, allsamelen_record.ALT, "CAG", "", None) + true_bestguess_norm_dosages = np.array([0, 0, 0, 0], dtype=np.float32) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.bestguess_norm) == + true_bestguess_norm_dosages) + true_bestguess_dosages = np.array([6, 6, 6, 6]) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.bestguess) == + true_bestguess_dosages) + true_beagle_norm_dosages = np.array([0, 0, 0, 0]) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap_norm) == + true_beagle_norm_dosages) + + # Test regular diploid record - Example with bestguess same as AP-based dosage + diploid_record = get_dummy_record_diploid() + diploid_record.FORMAT["AP1"] = np.array([[0, 0], [1, 0], [1, 0], [1, 0], [0, 1], [0, 0]]) + diploid_record.FORMAT["AP2"] = np.array([[1, 0], [1, 0], [1, 0], [0, 1], [0, 1], [0, 0]]) + rec = trh.TRRecord(diploid_record, diploid_record.REF, diploid_record.ALT, "CAG", "", None) + true_bestguess_dosages = np.array([7, 8, 8, 10, 12, 6]) + true_bestguess_dosages_norm = 2*np.array([1/6, 1/3, 1/3, 2/3, 1, 0], dtype=np.float32) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.bestguess) == + true_bestguess_dosages) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap) == + true_bestguess_dosages) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.bestguess_norm) == + true_bestguess_dosages_norm) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap_norm) == + true_bestguess_dosages_norm) + # Test if bestguess doesn't match AP + diploid_record.FORMAT["AP1"] = np.array([[0.5, 0.5], [1, 0], [1, 0], [1, 0], [0, 1], [0, 0]]) + diploid_record.FORMAT["AP2"] = np.array([[1, 0], [1, 0], [1, 0], [0.25, 0.75], [0, 1], [0, 0]]) + true_beagleap_dosages = np.array([9, 8, 8, 9.5, 12, 6]) + assert np.all(rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap) == + true_beagleap_dosages) + # Test if beagle APs add up to more than 1 or are negative + diploid_record.FORMAT["AP1"] = np.array([[10, 0.5], [1, 0], [1, 0], [1, 0], [0, 1], [0, 0]]) + with pytest.raises(ValueError): + rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap) + diploid_record.FORMAT["AP1"] = np.array([[-0.5, 0.5], [1, 0], [1, 0], [1, 0], [0, 1], [0, 0]]) + with pytest.raises(ValueError): + rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap) - # Test example where alt=[] + # Test triploid example where alt=[] triploid_record = get_triploid_record() rec = trh.TRRecord(triploid_record, ref_allele, [], "CAG", "", None) true_len_gts = [[3, 3, -2], @@ -298,10 +388,16 @@ def test_TRRecord_GetGenotypes(): [ref_allele, ref_allele, ','], [ref_allele, ref_allele, ref_allele]] true_gts = np.array(true_gts) - + true_bestguess_dosages = np.array([6, 6, 6, 9]) assert np.all(rec.GetGenotypeIndicies()[:, :-1] == true_idx_gts) assert np.all(rec.GetLengthGenotypes()[:, :-1] == true_len_gts) assert np.all(rec.GetStringGenotypes()[:, :-1] == true_gts) + assert np.all(rec.GetDosages() == true_bestguess_dosages) + # Try to get beagle-based dosages when missing AP1/AP2 fields + with pytest.raises(ValueError): + rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap) + with pytest.raises(ValueError): + rec.GetDosages(dosagetype=trh.TRDosageTypes.beagleap_norm) # Test example with fewer alt_alleles than the max genotype index with pytest.raises(ValueError): diff --git a/trtools/utils/tr_harmonizer.py b/trtools/utils/tr_harmonizer.py index 03e214b9..d48c287c 100644 --- a/trtools/utils/tr_harmonizer.py +++ b/trtools/utils/tr_harmonizer.py @@ -36,6 +36,14 @@ class VcfTypes(enum.Enum): def __repr__(self): return '<{}.{}>'.format(self.__class__.__name__, self.name) +class TRDosageTypes(enum.Enum): + """Ways to compute TR dosages.""" + bestguess = "bestguess" + beagleap = "beagleap" + bestguess_norm = "bestguess_norm" + beagleap_norm = "beagleap_norm" + def __repr__(self): + return '<{}.{}>'.format(self.__class__.__name__, self.name) def _ToVCFType(vcftype: Union[str, VcfTypes]): # Convert the input to a VcfTypes enum. @@ -256,7 +264,7 @@ def HarmonizeRecord(vcftype: Union[str, VcfTypes], vcfrecord: cyvcf2.Variant): Returns ------- - TRRecord + trrecord : TRRecord A TRRecord object built out of the input record """ vcftype = _ToVCFType(vcftype) @@ -652,6 +660,10 @@ class TRRecord: ref_allele_length : like alt_allele_lengths, but for the reference allele. If this is passed, alt_allele_lengths must also be passed + min_allele_length : + Minimum allele length from the reference and alternate alleles + max_allele_length : + Maximum allele length from the reference and alternate alleles quality_score_transform : A function which turns the quality_field value into a float score. When None, the quality_field values are assumed @@ -734,7 +746,13 @@ def __init__(self, len(allele) / len(motif) for allele in self.alt_alleles ] - + # Update min/max length + if len(self.alt_alleles) > 0: + self.min_allele_length = min(self.ref_allele_length, min(self.alt_allele_lengths)) + self.max_allele_length = max(self.ref_allele_length, max(self.alt_allele_lengths)) + else: + self.min_allele_length = self.ref_allele_length + self.max_allele_length = self.ref_allele_length try: self._CheckRecord() @@ -1065,6 +1083,92 @@ def UniqueStringGenotypes(self) -> Set[int]: """ return set(self.UniqueStringGenotypeMapping().values()) + def GetDosages(self, + dosagetype: TRDosageTypes = TRDosageTypes.bestguess) -> Optional[np.ndarray]: + """ + Get an array of genotype dosages for each sample. + + Multiple strategies are used to compute dosages: + + - bestguess - Sum of the length (in num. rpt units) of alleles + - beagleap - For each haplotype, dosage is computed as: + sum_a len(a) x p(a) where len(a) is the length (in rpt. units) + of each allele a, and p(a) is the allele probability (from Beagle AP1/AP2 fields) + The total dosage is this value summed across the two haplotypes + - bestguess_norm - Same as bestguess but scaled to be between 0 and 2 + - beagleap_norm - Same as beagleap but scaled to be between 0 and 2 + + Note: normalized dosages currently not supported for haploid calls + Those are set to np.nan in the output dosages if using a _norm option + + Parameters + ---------- + dosagetype : Enum + Which TRDosageType to compute. Default bestguess + + Returns + ------- + dosages : npt.NDArray[np.float32] + A numpy array of dosages, of type float + If no samples are in the array, return None + """ + if self.GetNumSamples() == 0: + return None + if (dosagetype in [TRDosageTypes.beagleap, TRDosageTypes.beagleap_norm]) and \ + (self.vcfrecord.format("AP1") is None or self.vcfrecord.format("AP2") is None): + raise ValueError( + "Requested Beagle dosages for record at {}:{} but AP1/AP2 fields not found.".format(self.chrom, self.pos) + ) + if dosagetype in [TRDosageTypes.bestguess, TRDosageTypes.bestguess_norm]: + # Get length gts and replace -1 (missing) and -2 (low ploidy) with 0 + # But if normalizing set those to np.nan since unclear + # how to normalize haploid dosages which end up negative + # under the current method... + lengts = self.GetLengthGenotypes() + if dosagetype == TRDosageTypes.bestguess_norm: + lengts[lengts==-1] = np.nan + lengts[lengts==-2] = np.nan + else: + lengts[lengts==-1] = 0 + lengts[lengts==-2] = 0 + unnorm_dosages = lengts[:,:-1].sum(axis=1).astype(np.float32) + elif dosagetype in [TRDosageTypes.beagleap, TRDosageTypes.beagleap_norm]: + # Extract allele probabilities + ap1 = self.vcfrecord.format("AP1") + ref1 = np.clip(1-np.sum(ap1, axis=1), 0, 1) # If neg due to rounding, cutoff at 0 + ap2 = self.vcfrecord.format("AP2") + ref2 = np.clip(1-np.sum(ap2, axis=1), 0, 1) + + # Check AP field. allow wiggle room for rounding + if np.any(np.sum(ap1, axis=1) > 1.1) or np.any(np.sum(ap2, axis=1) > 1.1): + raise ValueError("AP1 or AP2 field summing to more than 1 detected") + if np.any(ap1 < 0) or np.any(ap2 < 0): + raise ValueError("Negative AP1 or AP2 fields detected") + + # Get haplotype dosages + max_alt_len = max(self.alt_allele_lengths) + h1_dos = np.clip(np.dot(ap1, self.alt_allele_lengths), 0, max_alt_len) + h2_dos = np.clip(np.dot(ap2, self.alt_allele_lengths), 0, max_alt_len) + ref1_dos = ref1*self.ref_allele_length + ref2_dos = ref2*self.ref_allele_length + + # Add together for final dosage + unnorm_dosages = (h1_dos + h2_dos + ref1_dos + ref2_dos).astype(np.float32) + else: + raise ValueError("Unsupported dosagetype") + if dosagetype in [TRDosageTypes.bestguess_norm, TRDosageTypes.beagleap_norm]: + if self.min_allele_length == self.max_allele_length: + # Can't normalize, just set all to 0 + dosages = np.zeros(self.GetNumSamples(), dtype=np.float32) + else: + # Normalize to be between 0 and 2 + dosages = (unnorm_dosages-2*self.min_allele_length)/(self.max_allele_length-self.min_allele_length) + assert not (np.any(dosages>=2.1) or np.any(dosages<=-0.1)) + dosages = np.clip(dosages, 0, 2) + else: + dosages = unnorm_dosages + return dosages + def GetLengthGenotypes(self) -> Optional[np.ndarray]: """ Get an array of length genotypes for each sample. diff --git a/trtools/utils/utils.py b/trtools/utils/utils.py index b76eb547..f7328f81 100644 --- a/trtools/utils/utils.py +++ b/trtools/utils/utils.py @@ -6,7 +6,7 @@ import itertools import math import os -from typing import Any, Dict, List, Optional +from typing import Any, Dict, List, Optional, Set import cyvcf2 import numpy as np @@ -18,7 +18,9 @@ def LoadSingleReader( vcf_loc: str, - checkgz: bool = True) -> Optional[cyvcf2.VCF]: + checkgz: bool = True, + lazy: bool = False, + samples: Set[str] = None) -> Optional[cyvcf2.VCF]: """ Return a VCF reader @@ -29,6 +31,11 @@ def LoadSingleReader( checkgz: Check whether VCF file is gzipped and indexed, if not return None + lazy: + if True, then don’t unpack (parse) the underlying record until needed. + Default: False + samples: + List of samples to include. If None, load all samples Returns ------- @@ -47,8 +54,14 @@ def LoadSingleReader( if not os.path.isfile(vcf_loc+".tbi"): common.WARNING("Could not find VCF index %s.tbi"%vcf_loc) return None + if samples is not None: + if not isinstance(samples, set): + common.WARNING( + "Samples cannot be loaded in a particular order. Order will be ignored" + ) + samples = list(samples) try: - return cyvcf2.VCF(vcf_loc) + return cyvcf2.VCF(vcf_loc, lazy=lazy, samples=samples) except OSError: common.WARNING("Could not open VCF file %s. Is it really VCF?"%vcf_loc) return None