Issue in installing ArchR package in linux

[Karthikdotcom]

Installing package into ‘/home1/ks85359/R/x86_64-pc-linux-gnu-library/4.2’
(as ‘lib’ is unspecified)
ERROR: dependency ‘rhdf5’ is not available for package ‘ArchR’

• removing ‘/home1/ks85359/R/x86_64-pc-linux-gnu-library/4.2/ArchR’
  Warning messages:
  1: In i.p(...) :
  installation of package ‘Rhdf5lib’ had non-zero exit status
  2: In i.p(...) :
  installation of package ‘rhdf5filters’ had non-zero exit status
  3: In i.p(...) : installation of package ‘rhdf5’ had non-zero exit status
  4: In i.p(...) :
  installation of package ‘/tmp/SLURM_23713863/Rtmp5KChIt/filefaf543c8e1a7/ArchR_1.0.2.tar.gz’ had non-zero exit status

[grimbough]

There's not much to go on here. Can you provide the full output of trying to install Rhdf5lib via:

BiocManager::install('Rhdf5lib')

[agysponge]

`** libs
mkdir -p "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "hdf5/src/".h "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "hdf5/c++/src/".h "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "hdf5/hl/src/".h "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "hdf5/hl/c++/src/".h "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "hdf5/src/"libhdf5.settings "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
mkdir -p "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/"
cp "hdf5/src/.libs/libhdf5.a" "/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/"
cp: can't get state of"hdf5/src/.libs/libhdf5.a" : No such file or directory
make: *** [Makevars:39: copying] Error 1
ERROR: compilation failed for package ‘Rhdf5lib’

• removing ‘/home/wuwt/anaconda3/envs/Cellcano2/lib/R/library/Rhdf5lib’
• installing source package ‘uwot’ ...
  but when useBiocManager::install('Rhdf5lib')`
  this problem will appear. I think the libhdf5.a is the most important problem,where many people have this problem