Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in dim(x) <- length(x) : attempt to set an attribute on NULL #732

Closed
njtierney opened this issue Oct 17, 2024 · 1 comment
Closed
Milestone

Comments

@njtierney
Copy link
Collaborator

Got a little mysterious bug here, it only comes up sometimes, but just logging it here so I can refer back to this.

>   lkj_checked <- check_samples(
+     x = x,
+     iid_function = iid,
+     sampler = hmc(),
+     one_by_one = TRUE
+   )
running 4 chains simultaneously on up to 8 CPU cores

    warmup                                      0/1000 | eta:  ?s          Error in dim(x) <- length(x) : attempt to set an attribute on NULL
Called from: as.array.default(batch_results$all_states)
Browse[1]> traceback()
No traceback available 
Browse[1]> n
> traceback()
14: as.array.default(batch_results$all_states)
13: as.array(batch_results$all_states) at inference_class.R#747
12: self$run_burst(n_samples = burst_lengths[burst]) at inference_class.R#401
11: sampler$run_chain(n_samples = n_samples, thin = thin, warmup = warmup, 
        verbose = verbose, pb_update = pb_update, one_by_one = one_by_one, 
     ... at inference.R#381
10: dispatch(sampler$run_chain(n_samples = n_samples, thin = thin, 
        warmup = warmup, verbose = verbose, pb_update = pb_update, 
     ... at inference.R#388
9: run_samplers(samplers = samplers, n_samples = n_samples, thin = thin, 
       warmup = warmup, verbose = verbose, pb_update = pb_update, 
    ... at inference.R#265
8: force(expr)
7: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(force(expr), finally = {
       data$`__exit__`(NULL, NULL, NULL)
    ...
5: with.python.builtin.object(tf$device(compute_options), {
       message_if_using_gpu(compute_options)
    ...
4: with(tf$device(compute_options), {
       message_if_using_gpu(compute_options)
    ... at inference.R#204
3: mcmc(model, sampler = sampler, verbose = verbose, one_by_one = one_by_one) at helpers.R#739
2: get_enough_draws(model = m, sampler = sampler, n_effective = n_effective, 
       verbose = TRUE, one_by_one = one_by_one, time_limit = time_limit) at helpers.R#854
1: check_samples(x = x, iid_function = iid, sampler = hmc(), one_by_one = TRUE)
@njtierney
Copy link
Collaborator Author

I can't see this bug anymore, I think it might have been fixed in #734

@github-project-automation github-project-automation bot moved this from Weekly Todo to Done in {greta} CRAN 0.5.0 release Nov 6, 2024
@njtierney njtierney added this to the 0.5.0 milestone Nov 7, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
No open projects
Development

No branches or pull requests

1 participant