✨ Add plot_pfid plot function #941
Workflow file for this run
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| name: "Tests" | |
| on: | |
| push: | |
| tags: | |
| - v** | |
| branches-ignore: | |
| - "dependabot/**" | |
| - "sourcery/**" | |
| - "pre-commit-ci-update-config" | |
| pull_request: | |
| jobs: | |
| pre-commit: | |
| name: Pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Run pre-commit | |
| uses: pre-commit/[email protected] | |
| docs: | |
| name: Build Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| conda-channels: conda-forge | |
| activate-conda: false | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| conda install -y pandoc | |
| python -m pip install -U pip wheel | |
| python -m pip install ".[docs]" | |
| - name: Show installed dependencies | |
| run: pip freeze | |
| - name: Build docs | |
| run: make --directory=docs clean html | |
| docs-link: | |
| name: Check Doc Links | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| conda-channels: conda-forge | |
| activate-conda: false | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| conda install -y pandoc | |
| python -m pip install -U pip wheel | |
| python -m pip install ".[docs]" | |
| - name: Show installed dependencies | |
| run: pip freeze | |
| - name: Build docs | |
| run: make --directory=docs clean linkcheck | |
| test: | |
| name: Test pyglotaran stable | |
| runs-on: ${{ matrix.os }} | |
| needs: [pre-commit, docs] | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip wheel | |
| python -m pip install -r requirements_pinned.txt | |
| python -m pip install -U -e ".[test]" | |
| - name: Run tests | |
| run: python -m pytest --nbval --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests | |
| - name: Codecov Upload | |
| continue-on-error: true | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| test-pyglotaran-dev: | |
| name: Test pyglotaran dev | |
| runs-on: ubuntu-latest | |
| needs: [pre-commit, docs] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip wheel | |
| python -m pip install -r requirements_pinned.txt | |
| python -m pip install -U -e ".[test]" | |
| python -m pip install git+https://github.com/glotaran/pyglotaran | |
| - name: Show installed dependencies | |
| run: pip freeze | |
| - name: Run tests | |
| run: python -m pytest --nbval --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests | |
| - name: Codecov Upload | |
| continue-on-error: true | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| name: test-pyglotaran-dev | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| test-min-versions: | |
| name: Test dependency min versions | |
| runs-on: ubuntu-latest | |
| needs: [pre-commit, docs] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip wheel | |
| python -m pip install -r requirements_min.txt | |
| python -m pip install -e ".[test]" | |
| - name: Show installed dependencies | |
| run: pip freeze | |
| - name: Run tests | |
| run: python -m pytest --nbval --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests | |
| - name: Codecov Upload | |
| continue-on-error: true | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| name: test-min-versions | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| deploy: | |
| name: Deploy to PyPi | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| needs: [test, test-pyglotaran-dev, test-min-versions] | |
| permissions: | |
| id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: python -m pip install -U hatch | |
| - name: Build dist | |
| run: hatch build | |
| - name: Publish package | |
| uses: pypa/[email protected] | |
| with: | |
| print-hash: true |