BWTCollection.cpp

/**
 ** BCR is part of:
 ** BEETL: Burrows-Wheeler Extended Tool Library
 ** Documentation in: doc/BEETL.md
 **
 ** Copyright (c) 2011-2014 Illumina, Inc. **
 ** BEETL software package is
 ** covered by the "BSD 2-Clause License" (see accompanying LICENSE file)
 **
 ** Citations: 
 ** 
 ** Markus J. Bauer, Anthony J. Cox and Giovanna Rosone
 ** Lightweight BWT Construction for Very Large String Collections.
 ** Proceedings of CPM 2011, pp.219-231
 ** 
 ** Markus J. Bauer, Anthony J. Cox, Giovanna Rosone and Marinella Sciortino
 ** Lightweight LCP Construction for Next-Generation Sequencing Datasets. 
 ** Proceedings of WABI 2012, pp 326-337, 2012
 
 ** Markus J. Bauer, Anthony J. Cox, Giovanna Rosone 
 ** Lightweight algorithms for constructing and inverting the BWT of string collections. 
 ** Theoretical Computer Science 483: 134-148 (2013)
 **  
 ** Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino
 ** Lightweight LCP construction for very large collections of strings. 
 ** Journal of Discrete Algorithms (2016) 37: 17-33
 **
 ** By Giovanna Rosone
 **
 **/


#include "BWTCollection.h"
#include "BCRexternalBWT.h"

namespace SXSI
{
    /**
     * Init bwt collection
     *
     * See BCRexternalBWT.h for more details.
     */
    BWTCollection * BWTCollection::InitBWTCollection(char* file1, char* fileOut, string inputPrevBCR)  {
	BWTCollection *result = new BCRexternalBWT(file1, fileOut, inputPrevBCR);
        return result;
    }
}