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NOTICE

BigOmics Analytics OmicsPlaygroud

Copyright (c) 2020 BigOmics Analytics

This product includes software developed at BigOmics Analytics (http://www.bigomics.ch/).

Source Code

The project maintains the following source code repositories:

Authors

Omics Playground is written by:

Third-party Content

The project uses the following third-party content:

affy

  • Version: 1.60.0
  • License: LGPL (>= 2.0)

AnnotationDbi

  • Version: 1.44.0
  • License: Artistic-2.0

beeswarm

  • Version: 0.2.3
  • License: Artistic-2.0

BigQuic

  • Version: 1.1-8
  • License: GPL (>= 3) | file LICENSE

BiocManager

  • Version: 1.30.4
  • License: Artistic-2.0

biomaRt

  • Version: 2.38.0
  • License: Artistic-2.0

Boruta

  • Version: 6.0.0
  • License: GPL (>= 2)

Cairo

  • Version: 1.5-10
  • License: GPL-2

caret

  • Version: 6.0-83
  • License: GPL (>= 2)

clime

  • Version: 0.4.1
  • License: GPL-2

ComICS

  • Version: 1.0.4
  • License: GPL-2

ComplexHeatmap

  • Version: 1.20.0
  • License: MIT + file LICENSE

corpcor

  • Version: 1.6.9
  • License: GPL (>= 3)

corpora

  • Version: 0.5
  • License: GPL-3

corrplot

  • Version: 0.84
  • License: GPL

countrycode

  • Version: 1.1.0
  • License: GPL-3

d3heatmap

  • Version: 0.6.1.2
  • License: GPL-3 | file LICENSE

data.table

  • Version: 1.12.2
  • License: MPL-2.0 | file LICENSE

DeconRNASeq

  • Version: 1.24.0
  • License: GPL-2

DeMixT

  • Version: NA
  • License: NA

DESeq2

  • Version: 1.22.2
  • License: LGPL (>= 3)

devtools

  • Version: 2.2.1
  • License: GPL (>= 2)

dragulaR

  • Version: 0.3.1
  • License: GPL-2

DT

  • Version: 0.5
  • License: GPL-3 | file LICENSE

edgeR

  • Version: 3.24.3
  • License: GPL (>=2)

EnsDb.Hsapiens.v86

  • Version: 2.99.0
  • License: Artistic-2.0

EnsDb.Mmusculus.v79

  • Version: 2.99.0
  • License: Artistic-2.0

ensembldb

  • Version: 2.6.8
  • License: LGPL

EPIC

  • Version: 1.1.5
  • License: file LICENSE

FARDEEP

  • Version: 1.0.1
  • License: MIT + file LICENSE

fastclime

  • Version: 1.4.1
  • License: GPL-2

fastcluster

  • Version: 1.1.25
  • License: FreeBSD | GPL-2 | file LICENSE

FastGGM

  • Version: 1.0
  • License: GPL (>= 2)

fgsea

  • Version: 1.8.0
  • License: MIT + file LICENCE

FNN

  • Version: 1.1.3
  • License: GPL (>= 2)

genefilter

  • Version: 1.64.0
  • License: Artistic-2.0

GenomicFeatures

  • Version: 1.34.8
  • License: Artistic-2.0

GGally

  • Version: 1.4.0
  • License: GPL (>= 2.0)

ggm

  • Version: 2.3
  • License: GPL (>= 2)

ggplot2

  • Version: 3.1.1
  • License: GPL-2 | file LICENSE

ggrepel

  • Version: 0.8.0
  • License: GPL-3 | file LICENSE

ggsci

  • Version: 2.9
  • License: GPL-3 | file LICENSE

glasso

  • Version: 1.10
  • License: GPL-2

glassoFast

  • Version: 1.0
  • License: GPL (>= 3)

Glimma

  • Version: 1.10.1
  • License: GPL-3 | file LICENSE

glmnet

  • Version: 2.0-16
  • License: GPL-2

gmodels

  • Version: 2.18.1
  • License: GPL-2

GO.db

  • Version: 3.7.0
  • License: Artistic-2.0

GOSim

  • Version: 1.20.0
  • License: GPL (>= 2)

gplots

  • Version: 3.0.1.1
  • License: GPL-2

gputools

  • Version: 1.1
  • License: GPL-3

grid

  • Version: 3.5.2
  • License: Part of R 3.5.2

GSA

  • Version: 1.03.1
  • License: LGPL

GSVA

  • Version: 1.30.0
  • License: GPL (>= 2)

heatmap3

  • Version: 1.1.6
  • License: GPL (>= 2)

heatmaply

  • Version: 0.16.0
  • License: GPL-2 | GPL-3

HiveR

  • Version: 0.3.42
  • License: GPL-3

htmltools

  • Version: 0.3.6
  • License: GPL (>= 2)

htmlwidgets

  • Version: 1.3
  • License: MIT + file LICENSE

huge

  • Version: 1.3.2
  • License: GPL-2

igraph

  • Version: 1.2.4
  • License: GPL (>= 2)

iheatmapr

  • Version: 0.4.10
  • License: MIT + file LICENSE

infercnv

  • Version: 1.1.3
  • License: BSD_3_clause + file LICENSE

irlba

  • Version: 2.3.3
  • License: GPL-3

ISOpureR

  • Version: 1.1.3
  • License: GPL-2

iTALK

  • Version: 0.1.0
  • License: CC-BY-NC-SA

kableExtra

  • Version: 1.1.0
  • License: MIT + file LICENSE

KEGG.db

  • Version: 3.2.3
  • License: file LICENSE

KEGGgraph

  • Version: 1.42.0
  • License: GPL (>= 2)

knitr

  • Version: 1.22
  • License: GPL

limma

  • Version: 3.38.3
  • License: GPL (>=2)

manhattanly

  • Version: 0.2.0
  • License: MIT + file LICENSE

maptools

  • Version: 0.9-5
  • License: GPL (>= 2)

MASS

  • Version: 7.3-51.3
  • License: GPL-2 | GPL-3

Matrix

  • Version: 1.2-17
  • License: GPL (>= 2) | file LICENCE

matrixTests

  • Version: 0.1.2
  • License: GPL-2

metap

  • Version: 1.1
  • License: GPL-2

mixOmics

  • Version: 6.6.2
  • License: GPL (>= 2)

monocle3

  • Version: 0.1.3
  • License: MIT + file LICENSE

msmsTests

  • Version: NA
  • License: NA

mygene

  • Version: 1.18.0
  • License: Artistic-2.0

nclust

  • Version: 2.1.1
  • License: GPL

NMF

  • Version: NA
  • License: NA

NNLM

  • Version: 0.4.2
  • License: BSD_2_clause + file LICENSE

org.Hs.eg.db

  • Version: 3.7.0
  • License: Artistic-2.0

org.Mm.eg.db

  • Version: 3.7.0
  • License: Artistic-2.0

pairsD3

  • Version: 0.1.0
  • License: GPL (>= 3)

parallel

  • Version: 3.5.2
  • License: Part of R 3.5.2

partykit

  • Version: 1.2-3
  • License: GPL-2 | GPL-3

pathview

  • Version: 1.22.3
  • License: GPL (>=3.0)
  • The pathview downloads and uses KEGG data. Non-academic uses may require a separate KEGG license agreement (details at http://www.kegg.jp/kegg/legal.html).

plotly

  • Version: 4.9.0
  • License: MIT + file LICENSE

plsRcox

  • Version: 1.7.4
  • License: GPL-3

plyr

  • Version: 1.8.4
  • License: MIT + file LICENSE

png

  • Version: 0.1-7
  • License: GPL-2 | GPL-3

ppcor

  • Version: 1.1
  • License: GPL-2

preprocessCore

  • Version: 1.44.0
  • License: LGPL (>= 2)

proteus

  • Version: 0.2.11
  • License: GPL-2

psych

  • Version: 1.8.12
  • License: GPL (>= 2)

qgraph

  • Version: 1.6.2
  • License: GPL-2

qlcMatrix

  • Version: 0.9.7
  • License: GPL-3

QUIC

  • Version: 1.1
  • License: GPL-3

qvalue

  • Version: 2.14.1
  • License: LGPL

randomForest

  • Version: 4.6-14
  • License: GPL (>= 2)

randomForestSRC

  • Version: 2.9.0
  • License: GPL (>= 3)

RColorBrewer

  • Version: 1.1-2
  • License: Apache License 2.0

rintrojs

  • Version: 0.2.2
  • License: AGPL-3

rmarkdown

  • Version: 1.12
  • License: GPL-3

rpart

  • Version: 4.1-15
  • License: GPL-2 | GPL-3

rpart.plot

  • Version: 3.0.7
  • License: GPL-3

Rtsne

  • Version: 0.15
  • License: file LICENSE

Rtsne.multicore

  • Version: 0.0.99
  • License: BSD_3_clause + file LICENSE

rWordCloud

  • Version: 0.1
  • License: file LICENSE

scatterD3

  • Version: 0.9
  • License: GPL (>= 3)

scran

  • Version: 1.10.2
  • License: GPL-3

Seurat

  • Version: 2.3.3
  • License: GPL-3 | file LICENSE

shiny

  • Version: 1.3.2
  • License: GPL-3 | file LICENSE

shinyBS

  • Version: 0.61
  • License: GPL-3

shinycssloaders

  • Version: 0.2.0
  • License: GPL-3

shinydashboard

  • Version: 0.7.1
  • License: GPL (>= 2) | file LICENSE

shinyjqui

  • Version: 0.3.2
  • License: MIT + file LICENSE

shinyjs

  • Version: 1.0.1.9006
  • License: AGPL-3

shinyWidgets

  • Version: 0.4.8
  • License: GPL-3 | file LICENSE

SILGGM

  • Version: 1.0.0
  • License: GPL (>= 2)

sinaplot

  • Version: 1.1.0
  • License: GPL (>= 2)

SNFtool

  • Version: 2.3.0
  • License: GPL

survival

  • Version: 2.44-1.1
  • License: LGPL (>= 2)

sva

  • Version: 3.30.1
  • License: Artistic-2.0

threejs

  • Version: 0.3.1
  • License: MIT + file LICENSE

tidyverse

  • Version: 1.2.1
  • License: GPL-3 | file LICENSE

tippy

  • Version: NA
  • License: NA

TxDb.Hsapiens.UCSC.hg19.knownGene

  • Version: NA
  • License: NA

TxDb.Mmusculus.UCSC.mm10.knownGene

  • Version: NA
  • License: NA

tximport

  • Version: 1.10.1
  • License: GPL (>=2)

umap

  • Version: 0.2.3.1
  • License: MIT + file LICENSE

UNDO

  • Version: NA
  • License: NA

visNetwork

  • Version: 2.0.6
  • License: MIT + file LICENSE

wCorr

  • Version: NA
  • License: NA

webshot

  • Version: 0.5.1
  • License: GPL-2

wordcloud

  • Version: 2.6
  • License: LGPL-2.1

wordcloud2

  • Version: 0.2.2
  • License: GPL-2

xgboost

  • Version: 0.82.1
  • License: Apache License (== 2.0) | file LICENSE