From d464b49ddf71a2a397463fcf83ca233821fdea1b Mon Sep 17 00:00:00 2001
From: Janez Kokosar <janez@genialis.com>
Date: Fri, 15 Jul 2016 14:53:31 -0500
Subject: [PATCH] Add bedGraphToBigWig (kentUtils)

---
 CHANGELOG.md |  1 +
 Dockerfile   | 11 +++++++++++
 2 files changed, 12 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index bd7a86d..639eca6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -14,6 +14,7 @@ This project adheres to [Semantic Versioning](http://semver.org/).
   the container and passing the host user's user and group IDs to the container
   via environment variables.
 - gosu 1.9.
+- bedGraphToBigWig from kentUtils 302.1.0.
 
 ### Changed
 
diff --git a/Dockerfile b/Dockerfile
index d64d036..6339b3a 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -150,6 +150,17 @@ RUN export DEBIAN_FRONTEND=noninteractive && \
     rm -r hisat2-$HISAT_VERSION/example && \
     echo "PATH=\$PATH:~/hisat2-$HISAT_VERSION" >> ~/.bash_profile && \
 
+    echo "Installing kentUtils..." && \
+    KU_VERSION=302.1.0 && \
+    KU_SHA1SUM=810cec2881472090f8d92f1f07adf8703bcda5ae && \
+    wget -q https://codeload.github.com/ENCODE-DCC/kentUtils/zip/v$KU_VERSION -O kentUtils.zip && \
+    echo "$KU_SHA1SUM *kentUtils.zip" | sha1sum -c - && \
+    unzip -q kentUtils.zip && \
+    rm kentUtils.zip && \
+    rm -r kentUtils-$KU_VERSION/src && \
+    find kentUtils-$KU_VERSION/bin/linux.x86_64 -type f -not -name 'bedGraphToBigWig' -print0 | xargs -0 rm -- && \
+    echo "PATH=\$PATH:~/kentUtils-$KU_VERSION/bin/linux.x86_64" >> ~/.bash_profile && \
+
     echo "Installing R packages..." && \
     sudo Rscript --slave --no-save --no-restore-history -e " \
       package_list = c( \