error preparing mgi database

[lubinskibu]

I used the prepare database and -m=update approaches and found that I was getting back 0 size files for mgi's db.

What I found when I walked the code was that

GeneSCF/class/lib/db/update_GO.sh

Line 13 in 7c09329

status=$(curl -s --head -w %{http_code} http://geneontology.org/gene-associations/${organism}.gaf.gz -o /dev/null)

returns a status of 301 so it was trying to pull the gene_association.mgi.gz which doesn't exist, the rest of the code ran as expected, but starting with nothing lead to a successful failure outcome. forcing the original file to be mgi.gaf.gz worked and built the databases correctly.