diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index edfcf80af5..49d85cb2d5 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -58773,9 +58773,10 @@ name: fermentation namespace: biological_process def: "The anaerobic enzymatic conversion of organic compounds, especially carbohydrates, coupling the oxidation and reduction of NAD/H and the generation of adenosine triphosphate (ATP)." [GOC:curators, ISBN:0201090910, MetaCyc:Fermentation] subset: goslim_pir -xref: MetaCyc:FERMENTATION-PWY +xref: MetaCyc:Fermentation xref: Wikipedia:Fermentation_(biochemistry) is_a: GO:0015980 ! energy derivation by oxidation of organic compounds +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0006114 @@ -63866,8 +63867,10 @@ synonym: "creatine anabolism" EXACT [] synonym: "creatine biosynthesis" EXACT [] synonym: "creatine formation" EXACT [] synonym: "creatine synthesis" EXACT [] +xref: MetaCyc:GLYCGREAT-PWY intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:57947 ! creatine zwitterion +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0006602 @@ -75955,9 +75958,9 @@ creation_date: 2012-10-17T15:46:40Z [Term] id: GO:0008153 -name: para-aminobenzoic acid biosynthetic process +name: 4-aminobenzoate biosynthetic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins." [ISBN:0198506732, MetaCyc:PWY-6543, PMID:11377864, PMID:11960743] +def: "The chemical reactions and pathways resulting in the formation of 4-aminobenzoate, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins." [ISBN:0198506732, MetaCyc:PWY-6543, PMID:11377864, PMID:11960743] synonym: "4-aminobenzoic acid biosynthesis" EXACT [] synonym: "4-aminobenzoic acid biosynthetic process" EXACT [] synonym: "p-aminobenzoic acid biosynthesis" EXACT [] @@ -75966,12 +75969,17 @@ synonym: "PABA biosynthesis" EXACT [] synonym: "PABA biosynthetic process" EXACT [] synonym: "para-aminobenzoic acid anabolism" EXACT [] synonym: "para-aminobenzoic acid biosynthesis" EXACT [] +synonym: "para-aminobenzoic acid biosynthetic process" EXACT [] synonym: "para-aminobenzoic acid formation" EXACT [] synonym: "para-aminobenzoic acid synthesis" EXACT [] synonym: "vitamin Bx biosynthesis" EXACT [] synonym: "vitamin Bx biosynthetic process" EXACT [] +xref: MetaCyc:PWY-6543 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-8276 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-8281 {source="skos:narrowMatch"} intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:17836 ! 4-aminobenzoate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0008154 @@ -98166,7 +98174,6 @@ synonym: "farnesyl diphosphate anabolism, mevalonate pathway" EXACT [] synonym: "farnesyl diphosphate formation, mevalonate pathway" EXACT [] synonym: "farnesyl diphosphate synthesis, mevalonate pathway" EXACT [] synonym: "isoprenoid pathway" EXACT [] -xref: MetaCyc:PWY-922 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_intermediate CHEBI:25350 ! mevalonate intersection_of: has_primary_output CHEBI:50277 ! farnesyl diphosphate @@ -137652,10 +137659,10 @@ name: benzoate metabolic process namespace: biological_process def: "The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid." [ISBN:0721662544] synonym: "benzoate metabolism" EXACT [] -xref: MetaCyc:P321-PWY xref: UM-BBD_pathwayID:benz2 intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:16150 ! benzoate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0018875 @@ -137663,9 +137670,9 @@ name: anaerobic benzoate metabolic process namespace: biological_process def: "The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid) that occur in the absence of oxygen." [GOC:ai] synonym: "anaerobic benzoate metabolism" EXACT [] -xref: MetaCyc:CENTBENZCOA-PWY xref: UM-BBD_pathwayID:benz is_a: GO:0018874 ! benzoate metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0018876 @@ -141866,11 +141873,13 @@ synonym: "isopentenyl diphosphate anabolism, mevalonate pathway" EXACT [] synonym: "isopentenyl diphosphate biosynthetic process via mevalonate" EXACT [GOC:pr] synonym: "isopentenyl diphosphate formation, mevalonate pathway" EXACT [] synonym: "isopentenyl diphosphate synthesis, mevalonate pathway" EXACT [] +xref: MetaCyc:PWY-922 is_a: GO:0006084 ! acetyl-CoA metabolic process is_a: GO:0009240 ! isopentenyl diphosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_intermediate CHEBI:36464 ! (R)-mevalonate intersection_of: has_primary_output CHEBI:128769 ! isopentenyl diphosphate(3-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0019288 @@ -143896,10 +143905,10 @@ namespace: biological_process def: "The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine." [GOC:go_curators] synonym: "glycine breakdown to creatine" EXACT [] synonym: "glycine degradation to creatine" EXACT [] -xref: MetaCyc:GLYCGREAT-PWY intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:57305 ! glycine zwitterion intersection_of: has_primary_output CHEBI:57947 ! creatine zwitterion +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0019464 @@ -146170,6 +146179,7 @@ namespace: biological_process def: "The anaerobic chemical reactions and pathways resulting in the breakdown of glucose into ethanol, lactate, formate, succinate, and acetate, yielding energy in the form of ATP." [ISBN:0716720094, MetaCyc:FERMENTATION-PWY] synonym: "glucose catabolic process to mixed acids" BROAD [] synonym: "glucose fermentation to mixed acids" EXACT [] +xref: MetaCyc:FERMENTATION-PWY xref: Wikipedia:Mixed_acid_fermentation is_a: GO:0019660 ! glycolytic fermentation intersection_of: GO:0019660 ! glycolytic fermentation @@ -146180,6 +146190,7 @@ intersection_of: has_primary_output CHEBI:16810 ! 2-oxoglutarate(2-) intersection_of: has_primary_output CHEBI:24996 ! lactate intersection_of: has_primary_output CHEBI:30031 ! succinate(2-) intersection_of: has_primary_output CHEBI:30089 ! acetate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0019665 @@ -192483,16 +192494,20 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i [Term] id: GO:0033387 -name: putrescine biosynthetic process from ornithine +name: putrescine biosynthetic process from arginine, via ornithine namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane by decarboxylation of ornithine." [GOC:mah, MetaCyc:PWY-46] +def: "The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from arginine, via decarboxylation of ornithine." [GOC:mah, MetaCyc:PWY-46] synonym: "putrescine anabolism from ornithine" EXACT [] synonym: "putrescine biosynthesis from ornithine" EXACT [] +synonym: "putrescine biosynthetic process from ornithine" EXACT [] synonym: "putrescine formation from ornithine" EXACT [] synonym: "putrescine synthesis from ornithine" EXACT [] +xref: MetaCyc:PWY-46 intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_input CHEBI:46912 ! ornithinium(1+) +intersection_of: has_intermediate CHEBI:46912 ! ornithinium(1+) +intersection_of: has_primary_input CHEBI:32682 ! L-argininium(1+) intersection_of: has_primary_output CHEBI:326268 ! 1,4-butanediammonium +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0033388 @@ -192504,22 +192519,26 @@ synonym: "putrescine biosynthesis from arginine" EXACT [] synonym: "putrescine formation from arginine" EXACT [] synonym: "putrescine synthesis from arginine" EXACT [] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_input CHEBI:32696 ! argininium(1+) +intersection_of: has_primary_input CHEBI:32682 ! L-argininium(1+) intersection_of: has_primary_output CHEBI:326268 ! 1,4-butanediammonium +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0033389 -name: putrescine biosynthetic process from arginine, using agmatinase +name: putrescine biosynthetic process from arginine, via agmatine namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine; in this pathway, arginine is converted to agmatine, and agmatine is converted to putrescine in a single enzymatic step." [GOC:mah, MetaCyc:PWY-40] +def: "The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from arginine via agmatine." [GOC:mah, MetaCyc:PWY-40] synonym: "putrescine anabolism from arginine, using agmatinase" EXACT [] synonym: "putrescine biosynthesis from arginine, using agmatinase" EXACT [] +synonym: "putrescine biosynthetic process from arginine, using agmatinase" EXACT [] synonym: "putrescine formation from arginine, using agmatinase" EXACT [] synonym: "putrescine synthesis from arginine, using agmatinase" EXACT [] +xref: MetaCyc:PWY-40 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_intermediate CHEBI:58145 ! agmatinium(2+) -intersection_of: has_primary_input CHEBI:32696 ! argininium(1+) +intersection_of: has_primary_input CHEBI:32682 ! L-argininium(1+) intersection_of: has_primary_output CHEBI:326268 ! 1,4-butanediammonium +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0033390 @@ -192530,10 +192549,12 @@ synonym: "putrescine anabolism from arginine via N-carbamoylputrescine" EXACT [] synonym: "putrescine biosynthesis from arginine via N-carbamoylputrescine" EXACT [] synonym: "putrescine formation from arginine via N-carbamoylputrescine" EXACT [] synonym: "putrescine synthesis from arginine via N-carbamoylputrescine" EXACT [] +xref: MetaCyc:PWY-43 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_intermediate CHEBI:58318 ! N-carbamoylputrescinium(1+) -intersection_of: has_primary_input CHEBI:32696 ! argininium(1+) +intersection_of: has_primary_input CHEBI:32682 ! L-argininium(1+) intersection_of: has_primary_output CHEBI:326268 ! 1,4-butanediammonium +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI [Term] id: GO:0033391 @@ -409960,7 +409981,9 @@ id: GO:0090638 name: phosphatidylcholine biosynthesis from phosphatidylethanolamine namespace: biological_process def: "The phosphatidylcholine biosynthetic process that depends on direct conversion of the phosphatidyl-base phosphatidylethanolamine to phosphatidylcholine by successive methylations." [MetaCyc:PWY-6825] +xref: MetaCyc:PWY-6825 is_a: GO:0006656 ! phosphatidylcholine biosynthetic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: tb creation_date: 2015-04-23T15:56:12Z @@ -409978,7 +410001,9 @@ id: GO:0090640 name: phosphatidylcholine biosynthesis from sn-glycero-3-phosphocholine namespace: biological_process def: "The phosphatidylcholine biosynthetic process that involves the two-step acylation of sn-glycero-3-phosphocholine to a phosphatidylcholine." [MetaCyc:PWY-7470, PMID:24329598, PMID:27758859] +xref: MetaCyc:PWY-7470 is_a: GO:0006656 ! phosphatidylcholine biosynthetic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: tb creation_date: 2015-04-23T15:56:12Z @@ -488806,8 +488831,10 @@ synonym: "neomycin anabolism" EXACT [GOC:TermGenie] synonym: "neomycin biosynthesis" EXACT [GOC:TermGenie] synonym: "neomycin formation" EXACT [GOC:TermGenie] synonym: "neomycin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-7016 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:7507 ! neomycin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2012-07-17T04:28:28Z @@ -499216,8 +499243,10 @@ synonym: "lincomycin anabolism" EXACT [GOC:TermGenie] synonym: "lincomycin biosynthesis" EXACT [GOC:TermGenie] synonym: "lincomycin formation" EXACT [GOC:TermGenie] synonym: "lincomycin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-6955 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:6472 ! lincomycin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-15T11:54:01Z @@ -499292,8 +499321,10 @@ synonym: "pentalenolactone anabolism" EXACT [GOC:TermGenie] synonym: "pentalenolactone biosynthesis" EXACT [GOC:TermGenie] synonym: "pentalenolactone formation" EXACT [GOC:TermGenie] synonym: "pentalenolactone synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-6915 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:70790 ! pentalenolactone(1-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-16T09:49:47Z @@ -499316,8 +499347,10 @@ def: "The chemical reactions and pathways resulting in the breakdown of p-cumate synonym: "p-cumate breakdown" EXACT [GOC:TermGenie] synonym: "p-cumate catabolism" EXACT [GOC:TermGenie] synonym: "p-cumate degradation" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5273 intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:25822 ! p-cumate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-16T10:40:32Z @@ -499392,8 +499425,12 @@ def: "The chemical reactions and pathways resulting in the breakdown of benzoyl- synonym: "benzoyl-CoA breakdown" EXACT [GOC:TermGenie] synonym: "benzoyl-CoA catabolism" EXACT [GOC:TermGenie] synonym: "benzoyl-CoA degradation" EXACT [GOC:TermGenie] +xref: MetaCyc:CENTBENZCOA-PWY {source="skos:narrowMatch"} +xref: MetaCyc:P321-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-1361 {source="skos:narrowMatch"} intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:57369 ! benzoyl-CoA(4-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-16T11:13:59Z @@ -499431,9 +499468,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of 3-(2,3-d synonym: "3-(2,3-dihydroxyphenyl)propanoate breakdown" EXACT [GOC:TermGenie] synonym: "3-(2,3-dihydroxyphenyl)propanoate catabolism" EXACT [GOC:TermGenie] synonym: "3-(2,3-dihydroxyphenyl)propanoate degradation" EXACT [GOC:TermGenie] +xref: MetaCyc:HCAMHPDEG-PWY {source="skos:broadMatch"} intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:46951 ! 3-(2,3-dihydroxyphenyl)propanoate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28388" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28776" xsd:anyURI created_by: yaf creation_date: 2013-01-16T11:41:02Z @@ -499473,8 +499512,10 @@ def: "The chemical reactions and pathways resulting in the breakdown of 3-(3-hyd synonym: "3-(3-hydroxyphenyl)propanoate breakdown" EXACT [GOC:TermGenie] synonym: "3-(3-hydroxyphenyl)propanoate catabolism" EXACT [GOC:TermGenie] synonym: "3-(3-hydroxyphenyl)propanoate degradation" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY0-1277 {source="skos:broadMatch"} intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:57277 ! 3-(3-hydroxyphenyl)propanoate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-16T11:47:17Z @@ -499597,8 +499638,10 @@ def: "The chemical reactions and pathways resulting in the breakdown of 1,5-anhy synonym: "1,5-anhydro-D-fructose breakdown" EXACT [GOC:TermGenie] synonym: "1,5-anhydro-D-fructose catabolism" EXACT [GOC:TermGenie] synonym: "1,5-anhydro-D-fructose degradation" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-6992 intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:16715 ! 1,5-anhydro-D-fructose +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T09:56:25Z @@ -499690,8 +499733,10 @@ synonym: "capsanthin anabolism" EXACT [GOC:TermGenie] synonym: "capsanthin biosynthesis" EXACT [GOC:TermGenie] synonym: "capsanthin formation" EXACT [GOC:TermGenie] synonym: "capsanthin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5174 {source="skos:broadMatch"} intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:3375 ! capsanthin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T10:21:50Z @@ -499728,8 +499773,10 @@ synonym: "beta-carotene anabolism" EXACT [GOC:TermGenie] synonym: "beta-carotene biosynthesis" EXACT [GOC:TermGenie] synonym: "beta-carotene formation" EXACT [GOC:TermGenie] synonym: "beta-carotene synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5943 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:17579 ! beta-carotene +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T10:30:32Z @@ -499766,8 +499813,10 @@ synonym: "astaxanthin anabolism" EXACT [GOC:TermGenie] synonym: "astaxanthin biosynthesis" EXACT [GOC:TermGenie] synonym: "astaxanthin formation" EXACT [GOC:TermGenie] synonym: "astaxanthin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5288 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:40968 ! astaxanthin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T10:37:11Z @@ -499873,15 +499922,18 @@ creation_date: 2013-01-22T11:17:34Z [Term] id: GO:1901824 -name: delta-carotene biosynthetic process +name: alpha-carotene biosynthetic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of delta-carotene." [GOC:TermGenie, GOC:yaf, MetaCyc:PWY-5946, PMID:8837512, UniPathway:UPA00801] +def: "The chemical reactions and pathways resulting in the formation of alpha-carotene." [GOC:TermGenie, GOC:yaf, MetaCyc:PWY-5946, PMID:8837512, UniPathway:UPA00801] synonym: "delta-carotene anabolism" EXACT [GOC:TermGenie] synonym: "delta-carotene biosynthesis" EXACT [GOC:TermGenie] +synonym: "delta-carotene biosynthetic process" EXACT [] synonym: "delta-carotene formation" EXACT [GOC:TermGenie] synonym: "delta-carotene synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5946 intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:27705 ! delta-carotene +intersection_of: has_primary_output CHEBI:28425 ! alpha-carotene +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T11:17:38Z @@ -499918,8 +499970,10 @@ synonym: "zeaxanthin anabolism" EXACT [GOC:TermGenie] synonym: "zeaxanthin biosynthesis" EXACT [GOC:TermGenie] synonym: "zeaxanthin formation" EXACT [GOC:TermGenie] synonym: "zeaxanthin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5944 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:27547 ! zeaxanthin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T11:37:07Z @@ -499964,8 +500018,10 @@ synonym: "zeaxanthin diglucoside anabolism" EXACT [GOC:yaf] synonym: "zeaxanthin diglucoside biosynthesis" EXACT [GOC:yaf] synonym: "zeaxanthin diglucoside formation" EXACT [GOC:yaf] synonym: "zeaxanthin diglucoside synthesis" EXACT [GOC:yaf] +xref: MetaCyc:PWY-6288 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:63067 ! zeaxanthin bis(beta-D-glucoside) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T12:32:10Z @@ -500001,20 +500057,23 @@ creation_date: 2013-01-22T12:43:51Z [Term] id: GO:1901833 -name: all-trans-neoxanthin biosynthetic process +name: neoxanthin biosynthetic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of all-trans-neoxanthin." [GOC:TermGenie, GOC:yaf, MetaCyc:PWY-6809, PMID:11029576, UniPathway:UPA00388] +def: "The chemical reactions and pathways resulting in the formation of trans-neoxanthin and 9'-cis-neoxanthin." [GOC:TermGenie, GOC:yaf, MetaCyc:PWY-6809, PMID:11029576, UniPathway:UPA00388] synonym: "all-trans-neoxanthin anabolism" EXACT [GOC:TermGenie] synonym: "all-trans-neoxanthin biosynthesis" EXACT [GOC:TermGenie] +synonym: "all-trans-neoxanthin biosynthetic process" NARROW [] synonym: "all-trans-neoxanthin formation" EXACT [GOC:TermGenie] synonym: "all-trans-neoxanthin synthesis" EXACT [GOC:TermGenie] synonym: "neoxanthin anabolism" EXACT [GOC:yaf] synonym: "neoxanthin biosynthesis" EXACT [GOC:yaf] -synonym: "neoxanthin biosynthetic process" EXACT [GOC:yaf] synonym: "neoxanthin formation" EXACT [GOC:yaf] synonym: "neoxanthin synthesis" EXACT [GOC:yaf] +xref: MetaCyc:PWY-6809 intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:32446 ! all-trans-neoxanthin +intersection_of: has_primary_output CHEBI:35306 ! 9'-cis-neoxanthin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-01-22T12:43:56Z @@ -500559,8 +500618,10 @@ synonym: "capsorubin anabolism" EXACT [GOC:TermGenie] synonym: "capsorubin biosynthesis" EXACT [GOC:TermGenie] synonym: "capsorubin formation" EXACT [GOC:TermGenie] synonym: "capsorubin synthesis" EXACT [GOC:TermGenie] +xref: MetaCyc:PWY-5174 {source="skos:broadMatch"} intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:3378 ! capsorubin +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: yaf creation_date: 2013-02-04T10:50:26Z @@ -574619,8 +574680,10 @@ namespace: molecular_function def: "Catalyzes the reaction: L-phenylalanine + O2 + H2O -> phenylacetaldehyde + ammonia + hydrogen peroxide + CO2." [MetaCyc:RXN-8990, PMID:16766535, PMID:23204519] synonym: "aromatic aldehyde synthase" BROAD [] xref: EC:4.1.1.109 +xref: MetaCyc:RXN-8990 xref: RHEA:55532 is_a: GO:0016831 ! carboxy-lyase activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28523" xsd:anyURI created_by: tb creation_date: 2013-02-25T20:22:35Z