From 961cdaf2b608baf0b39534ae5a0a2991f2b971fd Mon Sep 17 00:00:00 2001 From: pgaudet Date: Thu, 19 Dec 2024 16:50:02 +0100 Subject: [PATCH] Update gene-product-information-gpi-format-20.md Made Column 8 mandatory --- _docs/gene-product-information-gpi-format-20.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/_docs/gene-product-information-gpi-format-20.md b/_docs/gene-product-information-gpi-format-20.md index 177c3d35..bfc539c1 100644 --- a/_docs/gene-product-information-gpi-format-20.md +++ b/_docs/gene-product-information-gpi-format-20.md @@ -46,7 +46,7 @@ The GPI 2.0 file comprises 11 tab-delimited fields. For fields that multiple val | 5 | **[Object Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)")** | 1 | PR:000000001| SO:0000704 | PR:000000001| GO:0032991 | SO:0000276 | 6 | **[Object Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)")** | 1 | NCBITaxon:9606| NCBItaxon:6239| NCBITaxon:9606| NCBITaxon:559292 |  NCBITaxon:9606| | 7 | [Encoded by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | 0 or > | HGNC:17810 | | HGNC:17810 | |HGNC:31532 | -| 8 | [Canonical object ID](#8-parent-protein "Definition and requirements for Canonical object ID (column 8)") | 0 for complexes; 1 for other entities | UniProtKB:Q4VCS5 | WB:WBGene00000007 | UniProtKB:Q4VCS5 | | RNAcentral:URS0000527F89_9606 | +| 8 | **[Canonical object ID](#8-parent-protein "Definition and requirements for Canonical object ID (column 8)")** | 1 | UniProtKB:Q4VCS5 | WB:WBGene00000007 | UniProtKB:Q4VCS5 | SGD:S000217643 | RNAcentral:URS0000527F89_9606 | | 9 | [Protein Complex Members](#9-protein-containing-complex-members "Definition and requirements for Protein Containing Complex Members (column 9)") | 0 or > | | | |SGD:S000003821 \|
SGD:S000001456 \|
SGD:S000005047|  | | 10 | [Cross-reference(s)](#10-db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | 0 or > | NCBIGene:154796 \|
ENSEMBL:ENSG00000126016 | UniProtKB:Q22397 | NCBIGene:154796 \|
ENSEMBL:ENSG00000126016 | ComplexPortal:CPX-1016 |  ENSG00000276365 |  | 11 | [Gene Product Properties](#11-gene-product-properties "Definition and requirements for Gene Product Properties (column 11)") | 0 or > | db_subset=Swiss-Prot| | |  |  @@ -96,8 +96,8 @@ SGD feature type named ORF in SGD ---> * Cardinality = 0, 1, > 1; for cardinality > 1, values must be pipe-separated. #### 8. Canonical object ID -* When the **DB:Object_ID** in Column 1 describes a protein isoform or a modified protein, this column refers to the gene-centric reference protein accession of the column 1 entry. If the **DB:Object_ID** in Column 1 corresponds to a gene-centric reference protein accession, then this value is repeated in Column 8. Together, the unique values in Column 8 correspond to the full set of genes encoded by the organism. -* Cardinality = 0 got protein complexes, 1 for all other object types. +* When the **DB:Object_ID** in Column 1 describes a protein isoform or a modified protein, this column refers to the gene-centric reference protein accession of the column 1 entry. If the **DB:Object_ID** in Column 1 corresponds to a gene-centric reference protein accession or a protein complex, then this value is repeated in Column 8. Together, the unique values in Column 8 correspond to the full set of genes encoded by the organism. +* Cardinality = 1. #### 9. Protein-Containing Complex Members * When the **DB:Object_ID** in Column 1 describes a protein-containing complex, this column contains the gene-centric reference protein accessions.