From c2fa1b16ae41448f1a38504e26bb8d7e74af4893 Mon Sep 17 00:00:00 2001 From: pgaudet Date: Tue, 3 Dec 2024 09:49:47 +0100 Subject: [PATCH] Update gene-product-information-gpi-format-20.md --- .../gene-product-information-gpi-format-20.md | 20 +++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/_docs/gene-product-information-gpi-format-20.md b/_docs/gene-product-information-gpi-format-20.md index 30d61c18..b4a3919e 100644 --- a/_docs/gene-product-information-gpi-format-20.md +++ b/_docs/gene-product-information-gpi-format-20.md @@ -47,18 +47,18 @@ The group in the `generated-by` field must be present in the [dbxrefs.yaml file] The file format comprises 11 tab-delimited fields. Fields with multiple values (for example, gene product synonyms) should separate values by pipes. -| **Column** | **Content** | **Required?** | **Cardinality** | **Example**| +| **Column** | **Content** | **Required?** | **Cardinality** | **Example 1**| **Example 2 (isoform)**| |----------|---------|-------------|---------|--------| -| 1 | [DB:DB_Object_ID](#1-dbdb-object-id "Definition and requirements for DB:DB_Object_ID (column 1)") | required | 1 | UniProtKB:Q4VCS5-1| -| 2 | [DB_Object_Symbol](#2-db-object-symbol "Definition and requirements for DB Object Symbol (column 2)") | required | 1 | AMOT| -| 3 | [DB_Object_Name](#3-db-object-name "Definition and requirements for DB Object Name (column 3)") | optional | 0 or greater | Angiomotin| -| 4 | [DB_Object_Synonym(s)](#4-db-object-synonym "Definition and requirements for DB Object Synonym(s) (column 4)") | optional | 0 or greater | KIAA1071| -| 5 | [DB_Object_Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)") | required | 1 | PR:000000001| -| 6 | [DB_Object_Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)") | required | 1 | NCBITaxon:9606| -| 7 | [Encoded_by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | optional | 0 or greater | HGNC:17810 | -| 8 | [Parent_Protein](#8-parent-protein "Definition and requirements for Parent Protein (column 8)") | optional | 0 or 1 | UniProtKB:Q4VCS5| +| 1 | [DB:DB_Object_ID](#1-dbdb-object-id "Definition and requirements for DB:DB_Object_ID (column 1)") | required | 1 | UniProtKB:Q4VCS5| UniProtKB:Q4VCS5-1| +| 2 | [DB_Object_Symbol](#2-db-object-symbol "Definition and requirements for DB Object Symbol (column 2)") | required | 1 | AMOT| AMOT| +| 3 | [DB_Object_Name](#3-db-object-name "Definition and requirements for DB Object Name (column 3)") | optional | 0 or greater | Angiomotin| Angiomotin| +| 4 | [DB_Object_Synonym(s)](#4-db-object-synonym "Definition and requirements for DB Object Synonym(s) (column 4)") | optional | 0 or greater | KIAA1071| KIAA1071| +| 5 | [DB_Object_Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)") | required | 1 | PR:000000001| PR:000000001| +| 6 | [DB_Object_Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)") | required | 1 | NCBITaxon:9606| NCBITaxon:9606| +| 7 | [Encoded_by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | optional | 0 or greater | HGNC:17810 | HGNC:17810 | +| 8 | [Parent_Protein](#8-parent-protein "Definition and requirements for Parent Protein (column 8)") | optional | 0 or 1 | | UniProtKB:Q4VCS5 | | 9 | [Protein_Containing_Complex_Members](#9-protein-containing-complex-members "Definition and requirements for Protein Containing Complex Members (column 9)") | optional | 0 or greater | SGD:S000003821\|SGD:S000001456\|SGD:S000005047| -| 10 | [DB_Xref(s)](#10-db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | NCBIGene:154796\|ENSEMBL:ENSG00000126016 | +| 10 | [DB_Xref(s)](#10-db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | NCBIGene:154796\|ENSEMBL:ENSG00000126016 | NCBIGene:154796\|ENSEMBL:ENSG00000126016 | | 11 | [Gene_Product_Properties](#11-gene-product-properties "Definition and requirements for Gene Product Properties (column 11)") | optional | 0 or greater | db_subset=Swiss-Prot|