diff --git a/_docs/download-ontology.md b/_docs/download-ontology.md index d2407c6c..aaf4af51 100644 --- a/_docs/download-ontology.md +++ b/_docs/download-ontology.md @@ -14,11 +14,11 @@ Files are available in the [OBO](https://owlcollab.github.io/oboformat/doc/obo-s # Gene ontology files Three versions of the ontology are available, as described below. -| File Name | Description | Download links | -|-------|--------------|-------------| -|**go-basic**| The basic version of the GO, filtered so that the ontology is acyclic. With this version, annotations can safely be propagated up the graph. The relations included are *is a*, *part of*, *regulates*, *negatively regulates* and *positively regulates*. This version excludes relationships that cross the 3 GO hierarchies. This version is recommended for most GO-based annotation tools.| - [go-basic.obo file](https://purl.obolibrary.org/obo/go/go-basic.obo){:target="blank"}
- [go-basic.obo file](https://purl.obolibrary.org/obo/go/go-basic.json) | -|**go** | Core ontology. This version includes additional relationships compared to **go-basic**, including *has_part* and *occurs_in*. These relations can link terms from different aspects of GO and create cycles in the ontology, so not all the relations are safe for propagating annotations. This version excludes relationships to external ontologies.| - [go.obo file](https://purl.obolibrary.org/obo/go.obo){:target="blank"}
 - [go.owl file](https://purl.obolibrary.org/obo/go.owl){:target="blank"} | [go.json file](https://purl.obolibrary.org/obo/go.json){:target="blank"} | -|**go-plus** | This is the fully axiomatised version of the GO. It includes cross-ontology relationships (axioms) and imports additional required ontologies including [ChEBI](https://www.ebi.ac.uk/chebi/){:target="blank"}, [Cell Ontology](http://www.obofoundry.org/ontology/cl.html){:target="blank"} and [Uberon](http://uberon.github.io/){:target="blank"}. It also includes to complete set of relationship types including some not present in **go**. This version is only available in [OWL](https://www.w3.org/OWL/){:target="blank"} format. | - [go-plus.owl file](https://purl.obolibrary.org/obo/go/extensions/go-plus.owl){:target="blank"} | +| File Name | Description | Download
.obo file | Download
.json file | Download
.owl file | +|-------|--------------|-------------|-------------|-------------| +|**go-basic**| The basic version of the GO, filtered so that the ontology is acyclic. With this version, annotations can safely be propagated up the graph. The relations included are *is a*, *part of*, *regulates*, *negatively regulates* and *positively regulates*. This version excludes relationships that cross the 3 GO hierarchies. This version is recommended for most GO-based annotation tools.| [go-basic.obo file](https://purl.obolibrary.org/obo/go/go-basic.obo){:target="blank"} |  [go-basic.obo file](https://purl.obolibrary.org/obo/go/go-basic.json) | NA |  +|**go** | Core ontology. This version includes additional relationships compared to **go-basic**, including *has_part* and *occurs_in*. These relations can link terms from different aspects of GO and create cycles in the ontology, so not all the relations are safe for propagating annotations. This version excludes relationships to external ontologies.| [go.obo file](https://purl.obolibrary.org/obo/go.obo){:target="blank"} |  [go.json file](https://purl.obolibrary.org/obo/go.json){:target="blank"} | [go.owl file](https://purl.obolibrary.org/obo/go.owl){:target="blank"} | +|**go-plus** | This is the fully axiomatised version of the GO. It includes cross-ontology relationships (axioms) and imports additional required ontologies including [ChEBI](https://www.ebi.ac.uk/chebi/){:target="blank"}, [Cell Ontology](http://www.obofoundry.org/ontology/cl.html){:target="blank"} and [Uberon](http://uberon.github.io/){:target="blank"}. It also includes to complete set of relationship types including some not present in **go**. This version is only available in [OWL](https://www.w3.org/OWL/){:target="blank"} format. | NA | NA | [go-plus.owl file](https://purl.obolibrary.org/obo/go/extensions/go-plus.owl){:target="blank"} | ### GO subset files