diff --git a/README.md b/README.md index f4df529..d017794 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # [AIDO](https://github.com/genbio-ai/AIDO).ModelGenerator -AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO). +AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism by enabling researchers to adapt pretrained models and generate finetuned models for downstream tasks. To read more about AIDO.ModelGenerator's integral role in building the world's first AI-driven Digital Organism, see [AIDO](https://github.com/genbio-ai/AIDO). AIDO.ModelGenerator is open-sourced as an opinionated plug-and-play research framework for cross-disciplinary teams in ML & Bio. diff --git a/docs/docs/index.md b/docs/docs/index.md index 0b9defa..739cb6e 100644 --- a/docs/docs/index.md +++ b/docs/docs/index.md @@ -1,6 +1,6 @@ # Introduction -AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO). +AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism by enabling researchers to adapt pretrained models and generate finetuned models for downstream tasks. To read more about AIDO.ModelGenerator's integral role in building the world's first AI-driven Digital Organism, see [AIDO](https://github.com/genbio-ai/AIDO). AIDO.ModelGenerator is open-sourced as an opinionated plug-and-play research framework for cross-disciplinary teams in ML & Bio. diff --git a/docs/mkdocs.yml b/docs/mkdocs.yml index e480453..120ac8e 100644 --- a/docs/mkdocs.yml +++ b/docs/mkdocs.yml @@ -1,7 +1,7 @@ site_name: AIDO.ModelGenerator site_url: https://genbio-ai.github.io/ModelGenerator/ site_author: GenBio AI -site_description: AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO). +site_description: AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism by enabling researchers to adapt pretrained models and generate finetuned models for downstream tasks. copyright: All rights reserved © 2024-Present, GenBio AI repo_name: AIDO.ModelGenerator diff --git a/pyproject.toml b/pyproject.toml index 39a011c..d11faaa 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,8 +4,8 @@ build-backend = "hatchling.build" [project] name = "modelgenerator" -version = "0.1.1-3" -description = "AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO)." +version = "0.1.1-4" +description = "AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism by enabling researchers to adapt pretrained models and generate finetuned models for downstream tasks." readme = "README.md" authors = [ { name = "GenBio AI" }, @@ -41,9 +41,9 @@ dependencies = [ "black", "jsonargparse[signatures]>=4.26.1", "awscli", - "openfold @ git+https://github.com/genbio-ai/openfold.git@c4aa2fd0d920c06d3fd80b177284a22573528442", - "dllogger @ git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769", - iotite>=1.0.1", + # "openfold @ git+https://github.com/genbio-ai/openfold.git@c4aa2fd0d920c06d3fd80b177284a22573528442", + # "dllogger @ git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769", + "biotite>=1.0.1", "einops>=0.8.0", "ml-collections>=1.0.0", "dm-tree>=0.1.8",