pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <!--
    Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management.
    You do not need to use this in your own projects, so the "parent" tag and it's
    contents below may be removed
    if you are using this file as a basis for your own project.
    -->
    <parent>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir</artifactId>
        <version>5.1.0</version>
    </parent>

    <artifactId>fhir-server</artifactId>

    <prerequisites>
        <maven>3.5.0</maven>
    </prerequisites>

    <dependencies>
        <dependency>
            <groupId>org.eclipse.jetty.websocket</groupId>
            <artifactId>websocket-api</artifactId>
            <version>${jetty_version}</version>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty.websocket</groupId>
            <artifactId>websocket-client</artifactId>
            <version>${jetty_version}</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.postgresql/postgresql -->
        <dependency>
            <groupId>org.postgresql</groupId>
            <artifactId>postgresql</artifactId>
            <version>42.2.9</version>
        </dependency>

        <!-- Needed for Email subscriptions -->
        <dependency>
            <groupId>com.sun.mail</groupId>
            <artifactId>javax.mail</artifactId>
            <exclusions>
                <exclusion>
                    <groupId>javax.activation</groupId>
                    <artifactId>activation</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <!--
        <dependency>
            <groupId>javax.mail</groupId>
            <artifactId>javax.mail-api</artifactId>
        </dependency>
        -->

        <!-- This dependency includes the core HAPI-FHIR classes -->
        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-base</artifactId>
            <version>${project.version}</version>
        </dependency>

        <!-- This dependency includes the JPA server itself, which is packaged separately from the rest of HAPI FHIR -->
        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-jpaserver-base</artifactId>
            <version>${project.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>org.springframework</groupId>
                    <artifactId>spring-jcl</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>commons-logging</groupId>
                    <artifactId>commons-logging</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <!-- This dependency includes the JPA EMPI Server -->
        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-jpaserver-empi</artifactId>
            <version>${project.version}</version>
        </dependency>

        <!-- HAPI-FHIR uses Logback for logging support. The logback library is included automatically by Maven as a part of the hapi-fhir-base dependency, but you also need to include a logging library. Logback
            is used here, but log4j would also be fine. -->
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
        </dependency>

        <!-- Needed for JEE/Servlet support -->
        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>javax.servlet-api</artifactId>
            <scope>provided</scope>
        </dependency>

        <!-- Used for CORS support -->
        <!-- Spring Web is used to deploy the server to a web container. -->
        <dependency>
            <groupId>org.springframework</groupId>
            <artifactId>spring-web</artifactId>
        </dependency>

        <!-- You may not need this if you are deploying to an application server which provides database connection pools itself. -->
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-dbcp2</artifactId>
            <exclusions>
                <exclusion>
                    <groupId>commons-logging</groupId>
                    <artifactId>commons-logging</artifactId>
                </exclusion>
            </exclusions>
        </dependency>

        <!-- The following dependencies are only needed for automated unit tests, you do not neccesarily need them to run the example. -->
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-servlets</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-servlet</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty.websocket</groupId>
            <artifactId>websocket-server</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-server</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-util</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-webapp</artifactId>
            <scope>test</scope>
        </dependency>

        <!--
        For some reason JavaDoc crashed during site generation unless we have this dependency
        -->
        <dependency>
            <groupId>javax.interceptor</groupId>
            <artifactId>javax.interceptor-api</artifactId>
            <scope>provided</scope>
        </dependency>

        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-test-utilities</artifactId>
            <version>${project.version}</version>
            <scope>test</scope>
        </dependency>

        <dependency>
            <groupId>org.awaitility</groupId>
            <artifactId>awaitility</artifactId>
            <version>4.0.0-rc1</version>
            <scope>test</scope>
        </dependency>

        <!-- TODO: remove this and migrate to JU5 -->
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.12</version>
            <scope>test</scope>
        </dependency>

    </dependencies>

    <packaging>war</packaging>

    <name>FHIR Server</name>

    <repositories>
        <repository>
            <id>oss-snapshots</id>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
            <url>https://oss.sonatype.org/content/repositories/snapshots/</url>
        </repository>
    </repositories>

    <properties>
        <!-- By default just re-write code with prettier -->
        <plugin.prettier.goal>write</plugin.prettier.goal>
    </properties>

    <build>

        <!-- Tells Maven to name the generated WAR file as fhir-server.war -->
        <finalName>fhir-server</finalName>

        <plugins>
            <!-- The following is not required for the application to build, but allows you to test it by issuing "mvn jetty:run" from the command line. -->
            <plugin>
                <groupId>org.eclipse.jetty</groupId>
                <artifactId>jetty-maven-plugin</artifactId>
                <version>${jetty_version}</version>
                <configuration>
                    <webApp>
                        <contextPath></contextPath>
                        <allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
                    </webApp>
                </configuration>
            </plugin>

            <!-- Tell Maven which Java source version you want to use -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>

            <!-- This is to run the integration tests -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-failsafe-plugin</artifactId>
                <configuration>
                    <redirectTestOutputToFile>true</redirectTestOutputToFile>
                </configuration>
                <executions>
                    <execution>
                        <goals>
                            <goal>integration-test</goal>
                            <goal>verify</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.basepom.maven</groupId>
                <artifactId>duplicate-finder-maven-plugin</artifactId>
                <executions>
                    <execution>
                        <id>default</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>check</goal>
                        </goals>
                        <inherited>true</inherited>
                    </execution>
                </executions>
                <configuration>
                    <failBuildInCaseOfConflict>true</failBuildInCaseOfConflict>
                    <checkTestClasspath>false</checkTestClasspath>
                    <ignoredResourcePatterns>
                        <ignoredResourcePattern>.*\.txt$</ignoredResourcePattern>
                        <ignoredResourcePattern>.*\.html$</ignoredResourcePattern>
                        <ignoredResourcePattern>config/favicon.ico</ignoredResourcePattern>
                    </ignoredResourcePatterns>
                </configuration>
            </plugin>

            <!-- Prettier plugin for code formatting -->
            <plugin>
                <groupId>com.hubspot.maven.plugins</groupId>
                <artifactId>prettier-maven-plugin</artifactId>
                <version>0.10</version>
                <configuration>
                    <printWidth>90</printWidth>
                    <tabWidth>2</tabWidth>
                    <useTabs>false</useTabs>
                    <ignoreConfigFile>true</ignoreConfigFile>
                    <ignoreEditorConfig>true</ignoreEditorConfig>
                </configuration>
                <executions>
                    <execution>
                    <phase>validate</phase>
                    <goals>
                        <goal>${plugin.prettier.goal}</goal>
                    </goals>
                    </execution>
                </executions>
            </plugin>


        </plugins>
    </build>

</project>