Update pyEnsemblRest #3
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: pull_request | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - .github/** | |
| jobs: | |
| test: | |
| name: Run Tests | |
| runs-on: ubuntu-latest | |
| environment: dev | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set Poetry Version | |
| id: set-poetry-version | |
| run: echo "POETRY_VERSION=$(cat .poetry-version)" >> $GITHUB_OUTPUT | |
| - name: Install Poetry | |
| id: install-poetry-version | |
| uses: snok/install-poetry@v1 | |
| with: | |
| version: ${{ steps.set-poetry-version.outputs.POETRY_VERSION }} | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| virtualenvs-path: .venv | |
| installer-parallel: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| - name: Install project | |
| run: poetry install --no-interaction | |
| - name: Run pre-commit hooks, excluding unit tests | |
| run: SKIP=unit-test poetry run pre-commit run --all-files | |
| - name: Run unit tests with pytest and code coverage with pytest-cov | |
| run: poetry run pytest -v --cov=pyensemblrest --cov-report lcov:./tests/lcov.info | |
| - name: Upload Coverage Results | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: ./tests/lcov.info |