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environment.yml
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channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- anyio=3.4.0=py38h578d9bd_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py38h497a2fe_0
- async_generator=1.10=py_0
- attrs=21.4.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bleach=4.1.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py38h497a2fe_1003
- ca-certificates=2021.10.26=h06a4308_2
- certifi=2021.10.8=py38h578d9bd_1
- cffi=1.15.0=py38h3931269_0
- charset-normalizer=2.0.9=pyhd8ed1ab_0
- cryptography=36.0.0=py38h9ce1e76_0
- debugpy=1.5.1=py38h709712a_0
- decorator=5.1.0=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.3=py38h32f6830_1002
- flit-core=3.6.0=pyhd8ed1ab_0
- idna=3.1=pyhd3deb0d_0
- importlib-metadata=4.10.0=py38h578d9bd_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- ipykernel=6.6.0=py38he5a9106_0
- ipython=7.30.1=py38h578d9bd_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.1=py38h578d9bd_0
- jinja2=3.0.3=pyhd8ed1ab_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.3.2=pyhd8ed1ab_0
- jupyter_client=7.1.0=pyhd8ed1ab_0
- jupyter_core=4.9.1=py38h578d9bd_1
- jupyter_server=1.13.1=pyhd8ed1ab_0
- jupyterlab=3.2.5=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.10.2=pyhd8ed1ab_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libedit=3.1.20191231=he28a2e2_2
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_11
- libgomp=11.2.0=h1d223b6_11
- libnsl=2.0.0=h7f98852_0
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=he4da1e4_11
- libzlib=1.2.11=h36c2ea0_1013
- markupsafe=2.0.1=py38h497a2fe_1
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- mistune=0.8.4=py38h497a2fe_1005
- nbclassic=0.3.4=pyhd8ed1ab_0
- nbclient=0.5.9=pyhd8ed1ab_0
- nbconvert=6.3.0=py38h578d9bd_1
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- notebook=6.4.6=pyha770c72_0
- openssl=3.0.0=h7f98852_2
- packaging=21.3=pyhd8ed1ab_0
- pandoc=2.16.2=h7f98852_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- pexpect=4.8.0=py38h32f6830_1
- pickleshare=0.7.5=py38h32f6830_1002
- pip=21.2.4=py38h06a4308_0
- prometheus_client=0.12.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.24=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.10.0=pyhd8ed1ab_0
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pyparsing=3.0.6=pyhd8ed1ab_0
- pyrsistent=0.18.0=py38h497a2fe_0
- pysocks=1.7.1=py38h578d9bd_4
- python=3.8.12=hf930737_2_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.8=2_cp38
- pytz=2021.3=pyhd8ed1ab_0
- pyzmq=22.3.0=py38h2035c66_1
- readline=8.1=h46c0cb4_0
- requests=2.26.0=pyhd8ed1ab_1
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=58.0.4=py38h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.2.0=py38h578d9bd_2
- sqlite=3.37.0=h9cd32fc_0
- terminado=0.12.1=py38h578d9bd_1
- testpath=0.5.0=pyhd8ed1ab_0
- tk=8.6.11=h1ccaba5_0
- tornado=6.1=py38h497a2fe_2
- traitlets=5.1.1=pyhd8ed1ab_0
- urllib3=1.26.7=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.2.3=pyhd8ed1ab_0
- wheel=0.37.0=pyhd3eb1b0_1
- xz=5.2.5=h7b6447c_0
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- pip:
- adjusttext==0.7.3
- anndata==0.7.8
- annoy==1.17.0
- appdirs==1.4.4
- bbknn==1.5.1
- click==8.0.3
- cmake==3.26.3
- configargparse==1.5.3
- connection-pool==0.0.3
- cycler==0.11.0
- cython==0.29.26
- datrie==0.8.2
- docutils==0.18.1
- fa2==0.3.5
- filelock==3.6.0
- fonttools==4.28.5
- gitdb==4.0.9
- gitpython==3.1.27
- h5py==3.6.0
- harmony-pytorch==0.1.7
- harmonypy==0.0.5
- igraph==0.9.9
- imageio==2.13.5
- ipywidgets==7.6.5
- joblib==1.1.0
- jupyterlab-widgets==1.0.2
- kiwisolver==1.3.2
- leidenalg==0.8.8
- lit==16.0.2
- llvmlite==0.37.0
- loompy==3.0.6
- matplotlib==3.5.1
- mpmath==1.3.0
- multicoretsne==0.1
- mycolorpy==1.5.1
- natsort==8.0.2
- networkx==2.6.3
- numba==0.54.1
- numexpr==2.8.1
- numpy==1.20.0
- numpy-groupies==0.9.14
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-cupti-cu11==11.7.101
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- nvidia-cufft-cu11==10.9.0.58
- nvidia-curand-cu11==10.2.10.91
- nvidia-cusolver-cu11==11.4.0.1
- nvidia-cusparse-cu11==11.7.4.91
- nvidia-nccl-cu11==2.14.3
- nvidia-nvtx-cu11==11.7.91
- pandas==1.3.5
- patsy==0.5.2
- pillow==8.4.0
- plac==1.3.4
- psutil==5.9.0
- pulp==2.6.0
- py==1.11.0
- pynndescent==0.5.5
- python-igraph==0.9.9
- pywavelets==1.2.0
- ratelimiter==1.2.0.post0
- retry==0.9.2
- scanpy==1.8.2
- scikit-image==0.19.1
- scikit-learn==1.0.2
- scipy==1.7.3
- scrublet==0.2.3
- scvelo==0.2.4
- seaborn==0.11.2
- sinfo==0.3.4
- smart-open==5.2.1
- smmap==5.0.0
- snakemake==7.0.4
- statsmodels==0.13.1
- stdlib-list==0.8.0
- stopit==1.1.2
- sympy==1.11.1
- tables==3.7.0
- tabulate==0.8.9
- texttable==1.6.4
- threadpoolctl==3.0.0
- tifffile==2021.11.2
- toposort==1.7
- torch==2.0.0
- tqdm==4.62.3
- triton==2.0.0
- typing-extensions==4.0.1
- umap-learn==0.5.2
- widgetsnbextension==3.5.2
- wrapt==1.13.3
- xlrd==1.2.0
- yte==1.2.0