Dockerfile

# Galaxy - GalaxyP

FROM bgruening/galaxy-sequence-tools:19.01

MAINTAINER Björn A. Grüning, bjoern.gruening@gmail.com

ENV GALAXY_CONFIG_BRAND Galaxy for Proteomic Research

# Install tools
ADD galaxyp.yaml $GALAXY_ROOT/tools.yaml

RUN install-tools $GALAXY_ROOT/tools.yaml && \
    /tool_deps/_conda/bin/conda clean --tarballs

# Add data library defintion file
ADD library_data.yaml $GALAXY_ROOT/library_data.yaml

# Add workflows to the Docker image
ADD ./workflows/* $GALAXY_HOME/workflows/

ENV GALAXY_CONFIG_TOOL_PATH=/galaxy-central/tools/

RUN startup_lite && \
    galaxy-wait && \
    workflow-install --workflow_path $GALAXY_HOME/workflows/ -g http://localhost:8080 -u $GALAXY_DEFAULT_ADMIN_USER -p $GALAXY_DEFAULT_ADMIN_PASSWORD && \
    setup-data-libraries -i $GALAXY_ROOT/library_data.yaml -g http://localhost:8080 -u $GALAXY_DEFAULT_ADMIN_USER -p $GALAXY_DEFAULT_ADMIN_PASSWORD