From 124fc5205762aaf4f7b39b09a85b5b3fb918370d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie=20Joss=C3=A9?= <84919248+Marie59@users.noreply.github.com> Date: Thu, 5 Dec 2024 15:06:17 +0100 Subject: [PATCH] Bgc ocean new tool (#148) * Add ingestor tool * Add test data files * fix lint rm directory * fix test * fix test * Rm useless test data file * Improve id, name, description help * Add new tool on bgc ocean * Delete tools/ocean/bgc_harmonizer.xml * Delete tools/ocean/test-data/D6901758_001.nc * Delete tools/ocean/test-data/D6901758_002.nc * Delete tools/ocean/test-data/D6901758_003.nc * Delete tools/ocean/test-data/D6901758_004.nc * Delete tools/ocean/test-data/D6901758_005.nc * Create .shed.yml * rm useless if --- tools/bgc_ocean/.shed.yml | 15 +++ tools/bgc_ocean/bgc_harmonizer.xml | 126 ++++++++++++++++++++++ tools/bgc_ocean/test-data/D6901758_001.nc | Bin 0 -> 41536 bytes tools/bgc_ocean/test-data/D6901758_002.nc | Bin 0 -> 44056 bytes tools/bgc_ocean/test-data/D6901758_003.nc | Bin 0 -> 43792 bytes tools/bgc_ocean/test-data/D6901758_004.nc | Bin 0 -> 45064 bytes tools/bgc_ocean/test-data/D6901758_005.nc | Bin 0 -> 44968 bytes 7 files changed, 141 insertions(+) create mode 100644 tools/bgc_ocean/.shed.yml create mode 100644 tools/bgc_ocean/bgc_harmonizer.xml create mode 100644 tools/bgc_ocean/test-data/D6901758_001.nc create mode 100644 tools/bgc_ocean/test-data/D6901758_002.nc create mode 100644 tools/bgc_ocean/test-data/D6901758_003.nc create mode 100644 tools/bgc_ocean/test-data/D6901758_004.nc create mode 100644 tools/bgc_ocean/test-data/D6901758_005.nc diff --git a/tools/bgc_ocean/.shed.yml b/tools/bgc_ocean/.shed.yml new file mode 100644 index 00000000..adda5327 --- /dev/null +++ b/tools/bgc_ocean/.shed.yml @@ -0,0 +1,15 @@ +categories: + - Ecology +owner: ecology +remote_repository_url: https://github.com/galaxyecology/tools-ecology/tree/master/tools/bgc_ocean +homepage_url: https://github.com/Marie59/FE-ft-ESG/tree/main/ocean +long_description: | + Process in-situ and biogechemical oceanographic Argo or Glider data for the Earth System +type: unrestricted +auto_tool_repositories: + name_template: "{{ tool_id }}" + description_template: "Wrapper for ocean biogechemical data tool: {{ tool_name }}." +suite: + name: "bgc_ocean_suite" + description: "A suite of tools for the ocean biogeochemical compartment of the Earth System" + type: unrestricted diff --git a/tools/bgc_ocean/bgc_harmonizer.xml b/tools/bgc_ocean/bgc_harmonizer.xml new file mode 100644 index 00000000..32be390d --- /dev/null +++ b/tools/bgc_ocean/bgc_harmonizer.xml @@ -0,0 +1,126 @@ + + and aggregator of insitu marine physical and biogeochemical data + + 1.1 + 0 + + + pokapok/qcv_ingester:@TOOL_VERSION@ + + + + + + + + + + + + + + + + + + + + + + @Manual{, + title = {QCV Ingester}, + author = {Pokapok}, + year = {2024}, + note = {https://gitlab.com/pokapok-projects/PKP8-OGI-BGC/qcv_ingester} + + + diff --git a/tools/bgc_ocean/test-data/D6901758_001.nc 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