diff --git a/tools/bgc_ocean/.shed.yml b/tools/bgc_ocean/.shed.yml new file mode 100644 index 00000000..adda5327 --- /dev/null +++ b/tools/bgc_ocean/.shed.yml @@ -0,0 +1,15 @@ +categories: + - Ecology +owner: ecology +remote_repository_url: https://github.com/galaxyecology/tools-ecology/tree/master/tools/bgc_ocean +homepage_url: https://github.com/Marie59/FE-ft-ESG/tree/main/ocean +long_description: | + Process in-situ and biogechemical oceanographic Argo or Glider data for the Earth System +type: unrestricted +auto_tool_repositories: + name_template: "{{ tool_id }}" + description_template: "Wrapper for ocean biogechemical data tool: {{ tool_name }}." +suite: + name: "bgc_ocean_suite" + description: "A suite of tools for the ocean biogeochemical compartment of the Earth System" + type: unrestricted diff --git a/tools/bgc_ocean/bgc_harmonizer.xml b/tools/bgc_ocean/bgc_harmonizer.xml new file mode 100644 index 00000000..32be390d --- /dev/null +++ b/tools/bgc_ocean/bgc_harmonizer.xml @@ -0,0 +1,126 @@ + + and aggregator of insitu marine physical and biogeochemical data + + 1.1 + 0 + + + pokapok/qcv_ingester:@TOOL_VERSION@ + + + + + + + + + + + + + + + + + + + + + + @Manual{, + title = {QCV Ingester}, + author = {Pokapok}, + year = {2024}, + note = {https://gitlab.com/pokapok-projects/PKP8-OGI-BGC/qcv_ingester} + + + diff --git a/tools/bgc_ocean/test-data/D6901758_001.nc b/tools/bgc_ocean/test-data/D6901758_001.nc new file mode 100644 index 00000000..ae5579b8 Binary files /dev/null and b/tools/bgc_ocean/test-data/D6901758_001.nc differ diff --git a/tools/bgc_ocean/test-data/D6901758_002.nc b/tools/bgc_ocean/test-data/D6901758_002.nc new file mode 100644 index 00000000..d984f49d Binary files /dev/null and b/tools/bgc_ocean/test-data/D6901758_002.nc differ diff --git a/tools/bgc_ocean/test-data/D6901758_003.nc b/tools/bgc_ocean/test-data/D6901758_003.nc new file mode 100644 index 00000000..7eeadd07 Binary files /dev/null and b/tools/bgc_ocean/test-data/D6901758_003.nc differ diff --git a/tools/bgc_ocean/test-data/D6901758_004.nc b/tools/bgc_ocean/test-data/D6901758_004.nc new file mode 100644 index 00000000..0fa93661 Binary files /dev/null and b/tools/bgc_ocean/test-data/D6901758_004.nc differ diff --git a/tools/bgc_ocean/test-data/D6901758_005.nc b/tools/bgc_ocean/test-data/D6901758_005.nc new file mode 100644 index 00000000..cf01aa5a Binary files /dev/null and b/tools/bgc_ocean/test-data/D6901758_005.nc differ