diff --git a/abis_mapping/templates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.csv b/abis_mapping/templates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.csv index 65ef7a7e..efb96846 100644 --- a/abis_mapping/templates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.csv +++ b/abis_mapping/templates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.csv @@ -1,17 +1,17 @@ -providerRecordID,providerRecordIDSource,locality,decimalLatitude,decimalLongitude,geodeticDatum,coordinateUncertaintyInMeters,dataGeneralizations,eventDate,samplingProtocol,basisOfRecord,recordedBy,recordNumber,occurrenceStatus,habitat,establishmentMeans,organismRemarks,individualCount,organismQuantity,organismQuantityType,lifeStage,sex,reproductiveCondition,ownerRecordID,ownerRecordIDSource,collectionCode,catalogNumber,catalogNumberSource,otherCatalogNumbers,otherCatalogNumbersSource,preparations,preparedDate,associatedSequences,sequencingMethod,verbatimIdentification,dateIdentified,identifiedBy,identificationMethod,scientificName,identificationQualifier,identificationRemarks,acceptedNameUsage,kingdom,taxonRank,threatStatus,conservationAuthority,threatStatusCheckProtocol,threatStatusDateDetermined,threatStatusDeterminedBy -1,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Calothamnus lateralis var. crassus,,Stream Environment and Water Pty Ltd,,Calothamnus lateralis var. crassus,,,,Plantae,,,,,, -2,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,, -3,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,, -4,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,, -5,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,, -6,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,, -7,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,, -8022FSJMJ079c5cf,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,, -9,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,, -10,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,, -11,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,One unopened flower when recorded and one leaf only. ID not confirmed,,Plantae,,,,,, -12,WAM,,-33.8,115.21,WGS84,,,26/09/2019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,,,Plantae,,,,,, -13,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,PreservedSpecimen,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,CC123,WAM,,,,,,,,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,, -14,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,20,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,,HumanObservation,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,CC456,WAM,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,Could not confirm the ID due to damaged flower,,Plantae,,,,,, -8022FSJMJ079c5cf,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,50,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,human observation,PreservedSpecimen,Stream Environment and Water Pty Ltd,PE:12:8832,present,"Closed forest of Melaleuca lanceolata. White, grey or brown sand, sandy loam.",native,Dried out leaf tips,2,,,adult,male,No breeding evident,MR-456,Stream Environment and Water Pty Ltd,32237,ARACH,WAM,BHP2012-7521 | M12378,BHP,Wet (in ethanol or some other preservative),26/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,Sanger dideoxy sequencing,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,Visually identified in the field (sighting),Caladenia excelsa,species incerta,no flowers present,Caladenia excelsa Hopper & A.P.Br.,Plantae,species,VU,WA,Check against Threatened and Priority Fauna List WA available from https://www.dpaw.wa.gov.au/plants-and-animals/threatened-species-and-communities/threatened-animals. Last updated 13 June 2022,,WA-BIO -ABC123,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,30,Coordinates generalised,26/09/2019,new sampling protocol,new basis of record,Stream Environment and Water Pty Ltd,PE:12:8833,new occurrence status,new habitat,new establishment means,Leaves brown,6,,,new life stage,new sex,new reproductiveCondition,MR-457,Stream Environment and Water Pty Ltd,32238,ARACH,WAM,BHP2012-7522 | M12379,BHP,new preparations,27/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,new sequencing method,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,new identification method,Caladenia excelsa,new identification qualifier,new remarks,Caladenia excelsa Hopper & A.P.Br.,new kingdom,new taxon rank,new threat status,WA,a random selection,, +providerRecordID,providerRecordIDSource,locality,decimalLatitude,decimalLongitude,geodeticDatum,coordinateUncertaintyInMeters,dataGeneralizations,eventDate,samplingProtocol,basisOfRecord,recordedBy,recordNumber,occurrenceStatus,habitat,establishmentMeans,organismRemarks,individualCount,organismQuantity,organismQuantityType,lifeStage,sex,reproductiveCondition,ownerRecordID,ownerRecordIDSource,collectionCode,catalogNumber,catalogNumberSource,otherCatalogNumbers,otherCatalogNumbersSource,preparations,preparedDate,associatedSequences,sequencingMethod,verbatimIdentification,dateIdentified,identifiedBy,identificationMethod,scientificName,identificationQualifier,identificationRemarks,acceptedNameUsage,kingdom,taxonRank,threatStatus,conservationAuthority,threatStatusCheckProtocol,threatStatusDateDetermined,threatStatusDeterminedBy,sensitivityCategory,sensitivityAuthority +1,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Calothamnus lateralis var. crassus,,Stream Environment and Water Pty Ltd,,Calothamnus lateralis var. crassus,,,,Plantae,,,,,,,, +2,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,,,, +3,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,,,, +4,WAM,Cowaramup Bay Road,-33.86,115.01,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Boronia anceps,,Stream Environment and Water Pty Ltd,,Boronia anceps,,,,Plantae,,,,,,,, +5,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,,,, +6,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,,,, +7,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,,,, +8022FSJMJ079c5cf,WAM,Cowaramup Bay Road,-33.86,114.99,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Banksia sessilis var. cordata,,Stream Environment and Water Pty Ltd,,Banksia sessilis var. cordata,,,,Plantae,,,,,,,, +9,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,, +10,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,, +11,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,One unopened flower when recorded and one leaf only. ID not confirmed,,Plantae,,,,,,,, +12,WAM,,-33.8,115.21,WGS84,,,26/09/2019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,,,Plantae,,,,,,,, +13,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,PreservedSpecimen,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,CC123,WAM,,,,,,,,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,, +14,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,20,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,,HumanObservation,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,CC456,WAM,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,Could not confirm the ID due to damaged flower,,Plantae,,,,,,,, +8022FSJMJ079c5cf,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,50,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,human observation,PreservedSpecimen,Stream Environment and Water Pty Ltd,PE:12:8832,present,"Closed forest of Melaleuca lanceolata. White, grey or brown sand, sandy loam.",native,Dried out leaf tips,2,,,adult,male,No breeding evident,MR-456,Stream Environment and Water Pty Ltd,32237,ARACH,WAM,BHP2012-7521 | M12378,BHP,Wet (in ethanol or some other preservative),26/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,Sanger dideoxy sequencing,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,Visually identified in the field (sighting),Caladenia excelsa,species incerta,no flowers present,Caladenia excelsa Hopper & A.P.Br.,Plantae,species,VU,WA,Check against Threatened and Priority Fauna List WA available from https://www.dpaw.wa.gov.au/plants-and-animals/threatened-species-and-communities/threatened-animals. Last updated 13 June 2022,,WA-BIO,, +ABC123,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,30,Coordinates generalised,26/09/2019,new sampling protocol,new basis of record,Stream Environment and Water Pty Ltd,PE:12:8833,new occurrence status,new habitat,new establishment means,Leaves brown,6,,,new life stage,new sex,new reproductiveCondition,MR-457,Stream Environment and Water Pty Ltd,32238,ARACH,WAM,BHP2012-7522 | M12379,BHP,new preparations,27/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,new sequencing method,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,new identification method,Caladenia excelsa,new identification qualifier,new remarks,Caladenia excelsa Hopper & A.P.Br.,new kingdom,new taxon rank,new threat status,WA,a random selection,,,, diff --git a/abis_mapping/templates/incidental_occurrence_data_v3/incidental_occurrence_data.csv b/abis_mapping/templates/incidental_occurrence_data_v3/incidental_occurrence_data.csv index 3404f913..c9ff9359 100644 --- a/abis_mapping/templates/incidental_occurrence_data_v3/incidental_occurrence_data.csv +++ b/abis_mapping/templates/incidental_occurrence_data_v3/incidental_occurrence_data.csv @@ -1 +1 @@ -providerRecordID,providerRecordIDSource,locality,decimalLatitude,decimalLongitude,geodeticDatum,coordinateUncertaintyInMeters,dataGeneralizations,eventDate,samplingProtocol,basisOfRecord,recordedBy,recordNumber,occurrenceStatus,habitat,establishmentMeans,organismRemarks,individualCount,organismQuantity,organismQuantityType,lifeStage,sex,reproductiveCondition,ownerRecordID,ownerRecordIDSource,collectionCode,catalogNumber,catalogNumberSource,otherCatalogNumbers,otherCatalogNumbersSource,preparations,preparedDate,associatedSequences,sequencingMethod,verbatimIdentification,dateIdentified,identifiedBy,identificationMethod,scientificName,identificationQualifier,identificationRemarks,acceptedNameUsage,kingdom,taxonRank,threatStatus,conservationAuthority,threatStatusCheckProtocol,threatStatusDateDetermined,threatStatusDeterminedBy +providerRecordID,providerRecordIDSource,locality,decimalLatitude,decimalLongitude,geodeticDatum,coordinateUncertaintyInMeters,dataGeneralizations,eventDate,samplingProtocol,basisOfRecord,recordedBy,recordNumber,occurrenceStatus,habitat,establishmentMeans,organismRemarks,individualCount,organismQuantity,organismQuantityType,lifeStage,sex,reproductiveCondition,ownerRecordID,ownerRecordIDSource,collectionCode,catalogNumber,catalogNumberSource,otherCatalogNumbers,otherCatalogNumbersSource,preparations,preparedDate,associatedSequences,sequencingMethod,verbatimIdentification,dateIdentified,identifiedBy,identificationMethod,scientificName,identificationQualifier,identificationRemarks,acceptedNameUsage,kingdom,taxonRank,threatStatus,conservationAuthority,threatStatusCheckProtocol,threatStatusDateDetermined,threatStatusDeterminedBy,sensitivityCategory,sensitivityAuthority diff --git a/abis_mapping/templates/incidental_occurrence_data_v3/mapping.py b/abis_mapping/templates/incidental_occurrence_data_v3/mapping.py index 65af2a96..832c4353 100644 --- a/abis_mapping/templates/incidental_occurrence_data_v3/mapping.py +++ b/abis_mapping/templates/incidental_occurrence_data_v3/mapping.py @@ -110,7 +110,10 @@ def apply_validation( ), plugins.mutual_inclusion.MutuallyInclusive( field_names=["ownerRecordID", "ownerRecordIDSource"], - ) + ), + plugins.mutual_inclusion.MutuallyInclusive( + field_names=["sensitivityCategory", "sensitivityAuthority"], + ), ], ), ) diff --git a/abis_mapping/templates/incidental_occurrence_data_v3/schema.json b/abis_mapping/templates/incidental_occurrence_data_v3/schema.json index 513001d1..df29eeac 100644 --- a/abis_mapping/templates/incidental_occurrence_data_v3/schema.json +++ b/abis_mapping/templates/incidental_occurrence_data_v3/schema.json @@ -674,6 +674,34 @@ "constraints": { "required": false } + }, + { + "name": "sensitivityCategory", + "title": "Sensitivity Category", + "description": "A category that defines a type of data sensitivity or restriction.", + "example": "Category 2", + "type": "string", + "format": "default", + "constraints": { + "required": false + }, + "vocabularies": [ + "SENSITIVITY_CATEGORY" + ] + }, + { + "name": "sensitivityAuthority", + "title": "Sensitivity Authority", + "description": "The authority under which a data sensitivity or restriction has been applied.", + "example": "Department of Environment, Climate Change and Water NSW", + "type": "string", + "format": "default", + "constraints": { + "required": false + }, + "vocabularies": [ + "SENSITIVITY_AUTHORITY" + ] } ] }