diff --git a/schema/va-spec/base/cohort-allele-frequency-study-result-profile-source.yaml b/schema/va-spec/base/cohort-allele-frequency-study-result-profile-source.yaml index 3927d6b..dd7d205 100644 --- a/schema/va-spec/base/cohort-allele-frequency-study-result-profile-source.yaml +++ b/schema/va-spec/base/cohort-allele-frequency-study-result-profile-source.yaml @@ -10,8 +10,8 @@ imports: namespaces: gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.2/json/ - vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/ - cat-vrs: /ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/ + vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/ + cat-vrs: /ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/ $defs: CohortAlleleFrequencyStudyResult: diff --git a/schema/va-spec/base/experimental-functional-impact-study-result-profile-source.yaml b/schema/va-spec/base/experimental-functional-impact-study-result-profile-source.yaml index 3d50842..343faa4 100644 --- a/schema/va-spec/base/experimental-functional-impact-study-result-profile-source.yaml +++ b/schema/va-spec/base/experimental-functional-impact-study-result-profile-source.yaml @@ -10,7 +10,7 @@ imports: namespaces: gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.2/json/ - vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/ + vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/ $defs: ExperimentalVariantFunctionalImpactStudyResult: diff --git a/schema/va-spec/base/json/CohortAlleleFrequencyStudyResult b/schema/va-spec/base/json/CohortAlleleFrequencyStudyResult index ac856fd..4666782 100644 --- a/schema/va-spec/base/json/CohortAlleleFrequencyStudyResult +++ b/schema/va-spec/base/json/CohortAlleleFrequencyStudyResult @@ -90,7 +90,7 @@ "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/Allele" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/Allele" } ], "description": "The Allele for which frequency results are reported.", diff --git a/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactProposition b/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactProposition index dd305c9..f1d3b73 100644 --- a/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactProposition +++ b/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactStudyResult b/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactStudyResult index 38510fb..817ac3f 100644 --- a/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactStudyResult +++ b/schema/va-spec/base/json/ExperimentalVariantFunctionalImpactStudyResult @@ -73,7 +73,7 @@ "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "The genetic variant for which a functional impact score is generated.", diff --git a/schema/va-spec/base/json/VariantDiagnosticProposition b/schema/va-spec/base/json/VariantDiagnosticProposition index 2f288ed..46c2de1 100644 --- a/schema/va-spec/base/json/VariantDiagnosticProposition +++ b/schema/va-spec/base/json/VariantDiagnosticProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/json/VariantOncogenicityProposition b/schema/va-spec/base/json/VariantOncogenicityProposition index a1beabe..c4fafdb 100644 --- a/schema/va-spec/base/json/VariantOncogenicityProposition +++ b/schema/va-spec/base/json/VariantOncogenicityProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/json/VariantPathogenicityProposition b/schema/va-spec/base/json/VariantPathogenicityProposition index 3b49479..b35422b 100644 --- a/schema/va-spec/base/json/VariantPathogenicityProposition +++ b/schema/va-spec/base/json/VariantPathogenicityProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/json/VariantPrognosticProposition b/schema/va-spec/base/json/VariantPrognosticProposition index a5ba008..70a7bad 100644 --- a/schema/va-spec/base/json/VariantPrognosticProposition +++ b/schema/va-spec/base/json/VariantPrognosticProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/json/VariantTherapeuticResponseProposition b/schema/va-spec/base/json/VariantTherapeuticResponseProposition index ed0eb70..9e36661 100644 --- a/schema/va-spec/base/json/VariantTherapeuticResponseProposition +++ b/schema/va-spec/base/json/VariantTherapeuticResponseProposition @@ -39,13 +39,13 @@ "subjectVariant": { "oneOf": [ { - "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/CategoricalVariant" + "$ref": "/ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/CategoricalVariant" }, { "$ref": "/ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.1/json/iriReference" }, { - "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/MolecularVariation" + "$ref": "/ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/MolecularVariation" } ], "description": "A variant that is the subject of the Proposition.", diff --git a/schema/va-spec/base/va-core-source.yaml b/schema/va-spec/base/va-core-source.yaml index 3f192ee..8e5c0b2 100644 --- a/schema/va-spec/base/va-core-source.yaml +++ b/schema/va-spec/base/va-core-source.yaml @@ -11,8 +11,8 @@ imports: namespaces: gks.core: /ga4gh/schema/gks-core/1.0.0-snapshot.2024-11.2/json/ - vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.1/json/ - cat-vrs: /ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.1/json/ + vrs: /ga4gh/schema/vrs/2.0.0-ballot.2024-11.2/json/ + cat-vrs: /ga4gh/schema/cat-vrs/1.0.0-ballot.2024-11.2/json/ $defs: # abstract core classes section -- InformationEntity, Activity, StudyResult, Proposition diff --git a/submodules/cat-vrs b/submodules/cat-vrs index 99ff0f9..b8f4aaf 160000 --- a/submodules/cat-vrs +++ b/submodules/cat-vrs @@ -1 +1 @@ -Subproject commit 99ff0f993daedafd0ce02aa2d220a8fccf7305aa +Subproject commit b8f4aaf812e36de749222c8d2d00fcae20137a47