add group classes

ga4gh · Nov 27, 2024 · b8f99f3 · b8f99f3
1 parent af2d5da
commit b8f99f3
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Showing 6 changed files with 9 additions and 9 deletions.
diff --git a/schema/va-spec/base/def/Condition.rst b/schema/va-spec/base/def/Condition.rst
@@ -1,5 +1,5 @@
-.. warning:: This data class is at a **draft** maturity level and may \
-    change significantly in future releases. Maturity \
+.. note:: This data class is at a **trial use** maturity level and may \
+    change in future releases. Maturity \
     levels are described in the :ref:`maturity-model`.
 
 **Computational Definition**

diff --git a/schema/va-spec/base/def/Therapeutic.rst b/schema/va-spec/base/def/Therapeutic.rst
@@ -1,5 +1,5 @@
-.. warning:: This data class is at a **draft** maturity level and may \
-    change significantly in future releases. Maturity \
+.. note:: This data class is at a **trial use** maturity level and may \
+    change in future releases. Maturity \
     levels are described in the :ref:`maturity-model`.
 
 **Computational Definition**

diff --git a/schema/va-spec/base/domain-entities-source.yaml b/schema/va-spec/base/domain-entities-source.yaml
@@ -9,7 +9,7 @@ imports:
 $defs:
   # Condition data structure for consolidating the different forms of conditions, individual vs co-occurring traits
   Condition:
-    maturity: draft
+    maturity: trial use
     description: >-
       A set of traits (TraitSet) or a single trait (Disease, Phenotype, etc.) that represents
       the object of a Variant Pathogenicity statement.
@@ -36,7 +36,7 @@ $defs:
 
   # Therapeutic
   Therapeutic:
-    maturity: draft
+    maturity: trial use
     description: >-
       A group of therapies (TherapyGroup) or a single therapy (drug, procedure, behavioral intervention, etc.).
     oneOf:

diff --git a/schema/va-spec/base/json/Condition b/schema/va-spec/base/json/Condition
@@ -2,7 +2,7 @@
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "$id": "https://w3id.org/ga4gh/schema/va-spec/1.x/base/json/Condition",
    "title": "Condition",
-   "maturity": "draft",
+   "maturity": "trial use",
    "description": "A set of traits (TraitSet) or a single trait (Disease, Phenotype, etc.) that represents the object of a Variant Pathogenicity statement.",
    "oneOf": [
       {

diff --git a/schema/va-spec/base/json/Therapeutic b/schema/va-spec/base/json/Therapeutic
@@ -2,7 +2,7 @@
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "$id": "https://w3id.org/ga4gh/schema/va-spec/1.x/base/json/Therapeutic",
    "title": "Therapeutic",
-   "maturity": "draft",
+   "maturity": "trial use",
    "description": "A group of therapies (TherapyGroup) or a single therapy (drug, procedure, behavioral intervention, etc.).",
    "oneOf": [
       {

diff --git a/tests/test_examples.py b/tests/test_examples.py
@@ -5,7 +5,7 @@
 def _get_trial_use_classes():
     return set([x for x in js_def if x.startswith('va-spec') and js_def[x]['maturity'] == 'trial use'])
 
-va_abstract_classes = {'va-spec.base:SubjectVariantProposition'}
+va_abstract_classes = {'va-spec.base:SubjectVariantProposition', 'va-spec.base:Condition', 'va-spec.base:Therapeutic'}
 
 def test_examples():
     with open(test_path / 'test_definitions.yaml') as def_file: