mimir_indexTemplate.txt

import gate.creole.ANNIEConstants
import gate.mimir.SemanticAnnotationHelper.Mode
import gate.mimir.index.OriginalMarkupMetadataHelper
import gate.mimir.db.DBSemanticAnnotationHelper as DefaultHelper
import gate.mimir.sparql.SPARQLSemanticAnnotationHelper as SPARQLHelper
import gate.mimir.util.DocumentFeaturesMetadataHelper
import gate.mimir.sparql.RequestMethod as RM

tokenASName = ""
tokenAnnotationType = ANNIEConstants.TOKEN_ANNOTATION_TYPE
tokenFeatures = {
  string()
  category()
  root()
}

def standardHelper (type) {
return new SPARQLHelper (
sparqlEndpoint :'http://localhost:7200/repositories/BIODIV',
sparqlRequestMethod:RM. POST_ENCODED,
queryPrefix :
'PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>\
PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>\
PREFIX owl:<http://www.w3.org/2002/07/owl#>\
PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>',
delegate:new DefaultHelper(annType:type, textFeatures:["start","end"], uriFeatures:["inst","broader"])
)
}


semanticASName = "BIODIV"
semanticAnnotations = {
index{
annotation helper : standardHelper ('Organism')
}

index{
annotation helper : standardHelper ('Environment')
}

index{
annotation helper : standardHelper ('Material')
}

index{
annotation helper : standardHelper ('Quality')
}

index{
annotation helper : standardHelper ('Process')
}


index {
annotation helper:new DefaultHelper(annType:'Token.root') 
annotation helper:new DefaultHelper(annType:'title') 
annotation helper:new DefaultHelper(annType:'abstract') 
annotation helper:new DefaultHelper(annType:'description') 
annotation helper:new DefaultHelper(annType:'methods')
annotation helper:new DefaultHelper(annType:'instrumentation')
annotation helper:new DefaultHelper(annType:'sampling')
annotation helper:new DefaultHelper(annType:'keyword') 
annotation helper:new DefaultHelper(annType:'attributeList')    
annotation helper:new DefaultHelper(annType:'coverage')

}
}
documentRenderer = new OriginalMarkupMetadataHelper()
documentFeaturesHelper = new DocumentFeaturesMetadataHelper("date",
"source","id", "type")
documentMetadataHelpers = [documentRenderer,documentFeaturesHelper]

// miscellaneous options - these are the defaults
//timeBetweenBatches = 1.hour
//maximumBatches = 20