You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I am trying to understand how SURVIVOR filters and merges vcfs from different callers.
I just wanted to confirm that SURVIVOR tests multiple strategies to derive SV length depending on the type and caller.
For ex: END - POS2 (instead of END - POS) for TRAs when SVLEN is not available.
I also wanted clarification on dealing with BNDs during merge. From my understanding, SURVIVOR will type BNDs to INV or TRA.
With this, if I have vcfs for a sample that are separated by SV type, should I be merging INV vcfs from one caller with BND vcfs from another to see if there is a consensus call set between them?
Thank you very much for your help
The text was updated successfully, but these errors were encountered:
Hi, I am trying to understand how SURVIVOR filters and merges vcfs from different callers.
I just wanted to confirm that SURVIVOR tests multiple strategies to derive SV length depending on the type and caller.
For ex: END - POS2 (instead of END - POS) for TRAs when SVLEN is not available.
I also wanted clarification on dealing with BNDs during merge. From my understanding, SURVIVOR will type BNDs to INV or TRA.
With this, if I have vcfs for a sample that are separated by SV type, should I be merging INV vcfs from one caller with BND vcfs from another to see if there is a consensus call set between them?
Thank you very much for your help
The text was updated successfully, but these errors were encountered: