diff --git a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
index 3fd4cec5d884..c6c8571b9efa 100644
--- a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
+++ b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
@@ -607,7 +607,7 @@ def recalculate_current_qty(self, item_code, batch_no):
 			)
 
 		if sl_entries:
-			self.make_sl_entries(sl_entries)
+			self.make_sl_entries(sl_entries, allow_negative_stock=True)
 
 
 def get_batch_qty_for_stock_reco(