diff --git a/README.md b/README.md
index e0a4996d..f9ac2dd9 100644
--- a/README.md
+++ b/README.md
@@ -2,7 +2,7 @@
 
 [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 [![API stability](https://img.shields.io/badge/stable%20API-no-orange)](https://shields.io/)
-[![PyPI version fury.io](https://img.shields.io/badge/version-0.3.2-green.svg)](https://pypi.python.org/pypi/ansicolortags/)
+[![PyPI version fury.io](https://img.shields.io/badge/version-0.3.3-green.svg)](https://pypi.python.org/pypi/ansicolortags/)
 
 Meeko reads an RDKit molecule object and writes a PDBQT string (or file)
 for [AutoDock-Vina](https://github.com/ccsb-scripps/AutoDock-Vina)
diff --git a/setup.py b/setup.py
index 04a09701..54e59e8a 100644
--- a/setup.py
+++ b/setup.py
@@ -21,7 +21,7 @@ def find_files(directory):
 
 setup(
     name="meeko",
-    version='0.3.2',
+    version='0.3.3',
     author="Forli Lab",
     author_email="forli@scripps.edu",
     url="https://github.com/ccsb-scripps/meeko",