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imagejan
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Use ome-types (or alternatives) to replace ome_companion_utils
Use ome-types (or alternatives) to represent metadata
Dec 19, 2024
visiview.ome_companion_utils
hcs.cellvoyager
andhcs.imagexpress
For example, this could be a mapping for the
cellvoyager
format:channel_metadata.channel_name
=>Image.Pixels.Channel.id
channel_metadata.display_color
=>Image.Pixels.Channel.color
channel_metadata.spatial_calibration_x
=>Image.Pixels.physical_size_x
withImage.Pixels.physical_size_x_unit
channel_metadata.spatial_calibration_y
=>Image.Pixels.physical_size_y
withImage.Pixels.physical_size_y_unit
channel_metadata.spatial_calibration_units
=> per dimension, see abovechannel_metadata.z_spacing
=>Image.Pixels.physical_size_z
channel_metadata.wavelength
=>Image.Pixels.Channel.emission_wavelength
channel_metadata.exposure_time
=>?
channel_metadata.exposure_time_unit
=>?
channel_metadata.objective
=>Image.ObjectiveSettings.id
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