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Makefile
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Makefile
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CFLAGS = -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result
ALL = fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm simulator \
fasta2DAM DAM2fasta
all: $(ALL)
fasta2DB: fasta2DB.c DB.c DB.h QV.c QV.h open_compressed.c open_compressed.h
gcc $(CFLAGS) -o fasta2DB fasta2DB.c DB.c QV.c open_compressed.c -lm
DB2fasta: DB2fasta.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DB2fasta DB2fasta.c DB.c QV.c -lm
quiva2DB: quiva2DB.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o quiva2DB quiva2DB.c DB.c QV.c -lm
DB2quiva: DB2quiva.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DB2quiva DB2quiva.c DB.c QV.c -lm
DBsplit: DBsplit.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBsplit DBsplit.c DB.c QV.c -lm
DBdust: DBdust.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBdust DBdust.c DB.c QV.c -lm
Catrack: Catrack.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o Catrack Catrack.c DB.c QV.c -lm
DBshow: DBshow.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBshow DBshow.c DB.c QV.c -lm
DBstats: DBstats.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBstats DBstats.c DB.c QV.c -lm
DBrm: DBrm.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBrm DBrm.c DB.c QV.c -lm
simulator: simulator.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o simulator simulator.c DB.c QV.c -lm
fasta2DAM: fasta2DAM.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o fasta2DAM fasta2DAM.c DB.c QV.c -lm
DAM2fasta: DAM2fasta.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DAM2fasta DAM2fasta.c DB.c QV.c -lm
DBupgrade.Sep.25.2014: DBupgrade.Sep.25.2014.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBupgrade.Sep.25.2014 DBupgrade.Sep.25.2014.c DB.c QV.c -lm
DBupgrade.Dec.31.2014: DBupgrade.Dec.31.2014.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DBupgrade.Dec.31.2014 DBupgrade.Dec.31.2014.c DB.c QV.c -lm
DUSTupgrade.Jan.1.2015: DUSTupgrade.Jan.1.2015.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o DUSTupgrade.Jan.1.2015 DUSTupgrade.Jan.1.2015.c DB.c QV.c -lm
clean:
rm -f $(ALL)
rm -fr *.dSYM
rm -f DBupgrade.Sep.25.2014 DBupgrade.Dec.31.2014 DUSTupgrade.Jan.1.2015
rm -f dazz.db.tar.gz
install:
cp $(ALL) ~/bin
package:
make clean
tar -zcf dazz.db.tar.gz README Makefile *.h *.c