Materials for the 2019 incoming student training week. Trello . Slack .
Make sure you complete the FIU Neuro Onboarding !
We also recommend that you at least start learning some programming with Codecademy . The free courses "Learn the Command Line", "Learn Python 2" (although we use Python 3), and "Learn git" are all extremely useful.
Thursday, August 15: Introduction and Resources
Time
Title
Instructor(s)
09:30
Welcome and Overview
Dr. Angela Laird
10:30
Dependencies Taylor Salo
12:30
Lunch Break
13:30
Open Science Dr. Angela Laird
14:30
FAIR Principles Dr. Angela Laird
15:30
Program Resources
Drs. Anthony Dick and Aaron Mattfeld
16:00
Community Resources Taylor Salo
Friday, August 16: Introduction to Programming
Time
Title
Instructor(s)
09:30
Basic Command Line
Dr. Michael Riedel
10:30
Basics of HPC/SLURM
Dr. Michael Riedel
11:30
Basic Python
Amanda Renfro
12:30
Lunch Break
13:30
Working with Python Packages
Amanda Renfro
14:30
Data Visualization Katherine Bottenhorn
15:30
Overflow Time/Programming Practice
Monday, August 19: MRI and Preprocessing
Time
Title
Instructor(s)
09:30
MRI Physics
Dr. Robert Laird
10:00
MRI Data Types
Dr. Angela Laird
10:30
BIDS
Dr. Michael Riedel
11:30
Working with Neuroimaging Data in Python Taylor Salo
12:30
Lunch Break
13:30
fMRI Preprocessing
Dr. Aaron Mattfeld
15:30
Data Quality Control
Dr. Michael Riedel
Wednesday, August 21: Analysis
Time
Title
Instructor(s)
09:30
fMRI Modeling and GLMs
Dr. Jessica Bartley
12:30
Lunch Break
13:30
Structural MRI Analysis
Dr. Anthony Dick
13:30
Breakout Session: ID Conn
Katherine Bottenhorn
Friday, August 23: Version Control and More Python
Time
Title
Instructor(s)
09:30
Basics of Docker/Singularity
Adam Kimbler
10:30
git/GitHub
Katherine Bottenhorn
12:30
Lunch Break
13:30
git/GitHub, continued
Katherine Bottenhorn
14:30
Overflow Time/General Q&A
15:30
Closing Comments
Dr. Angela Laird