Dockerfile

FROM rocker/r-ver:4.2.1

RUN mkdir /home/magpie
COPY . /home/magpie/

RUN apt-get update \
 && apt-get upgrade -y \
 && apt-get install -y libpng-dev \
 && apt-get install -y libjpeg-dev \
 && apt-get install -y zlib1g-dev \
 && apt-get install -y pkg-config \
 && apt-get install -y libssl-dev \
 && apt-get install -y libxml2-dev \
 && apt-get install -y libcurl4-openssl-dev \
 && apt-get install -y curl \
 && apt-get install -y texlive \
 && apt-get install -y fonts-inconsolata \
 && apt-get install -y pandoc \
 && apt-get install -y pandoc-citeproc \
 && apt-get install -y libfontconfig1-dev \
 && apt-get install -y libharfbuzz-dev \
 && apt-get install -y libfribidi-dev \
 && apt-get install -y libfreetype6-dev \
 && apt-get install -y libtiff5-dev \
 && apt-get install -y r-cran-ncdf4 \
 && apt-get install -y netcdf-bin \
 && apt-get install -y libnetcdf-dev \
 && apt-get install -y proj-bin \
 && apt-get install -y libproj-dev \
 && apt-get install -y gdal-bin \
 && apt-get install -y libgdal-dev \
 && apt-get install -y texlive-latex-extra \
 && apt-get install -y git \
 && fc-cache -fv

RUN R -e "options(repos = \
  list(CRAN = 'https://cran.rstudio.com/',pik='https://rse.pik-potsdam.de/r/packages')); \
  install.packages(c('gdxrrw', \
           'ggplot2', \
           'citation', \
           'curl', \
           'gdx', \
           'gms', \
           'magclass', \
           'madrat', \
           'mip', \
           'lucode2', \
           'magpie4', \
           'magpiesets', \
           'lusweave', \
           'luscale', \
           'goxygen', \
           'luplot', \
           'yaml'))"

RUN R -e "install.packages(c('ncdf4', \
                             'raster'))"

# Set GAMS version
ENV LATEST=40.2.0
ENV LATEST_SHORT=40.2
ENV GAMS_VERSION=${LATEST}

# Set GAMS bit architecture, either 'x64_64' or 'x86_32'
ENV GAMS_BIT_ARC=x64_64


# Download GAMS
RUN curl -SL "https://d37drm4t2jghv5.cloudfront.net/distributions/${LATEST}/linux/linux_${GAMS_BIT_ARC}_sfx.exe" --create-dirs -o /opt/gams/gams.exe

# Install GAMS
RUN cd /opt/gams &&\
    chmod +x gams.exe; sync &&\
    cp /home/magpie/gamslice.txt . &&\
    ./gams.exe &&\
    rm -rf gams.exe

COPY gamslice.txt /opt/gams/gams${LATEST_SHORT}_linux_${GAMS_BIT_ARC}_sfx/gamslice.txt
# Add GAMS path to user env path
RUN GAMS_PATH=$(dirname $(find / -name gams -type f -executable -print)) &&\
    ln -s $GAMS_PATH /usr/local/bin &&\
    echo "export PATH=\$PATH:$GAMS_PATH" >> ~/.bashrc &&\
    echo "export GAMS_PATH=$GAMS_PATH" >> ~/.bashrc &&\
    cd $GAMS_PATH &&\
    ./gamsinst -a

COPY gamslice.txt /opt/gams/gams${LATEST_SHORT}_linux_${GAMS_BIT_ARC}_sfx/gamslice.txt

CMD  cd /home/magpie && Rscript start.R