DESCRIPTION

Package: RMAFster
Title: Calculate and Explote RNA Mutant Allele Frequencies
Version: 0.0.0.9000
Authors@R: 
    person(given = "Franco",
           family = "Caramia",
           role = c("aut", "cre"),
           email = "franco.caramia@petermac.org",
           comment = c(ORCID = "0000-0002-5086-2544"))
Maintainer: Franco Caramia <franco.caramia@petermac.org>
Description: RMAFster calculates and explores RNA Mutated Allele Frequencies (RMAFs) from Bam Files. 
  It searches for previously detected DNA mutations in mRNA and calculates statistics under 2 hypotheses:
  Mutations are expressed in a bi-allelic manner and DNA Variant Allele Frequencies (VAF) are proportional
  to RMAFs. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
SystemRequirements: Python (>= 3.0.0)
Imports:
    data.table,
    dplyr,
    reticulate,
    ggplot2,
    patchwork,
    reshape2,
    ggpubr,
    lifecycle
Config/reticulate:
  list(
    packages = list(
      list(package = "pysam", pip = TRUE)
    )
  )
Suggests:
    testthat
RdMacros:
    lifecycle