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Build failed: could not find from_json() method in T's namespace #16

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titardrew opened this issue Apr 14, 2019 · 12 comments
Closed

Build failed: could not find from_json() method in T's namespace #16

titardrew opened this issue Apr 14, 2019 · 12 comments

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@titardrew
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Build fails on:

  • OSX 10.14.3
  • both gcc/g++ 4.2.1 and clang/clang++ 10.0.1

Steps to reproduce

  1. python setup.py install

Observed Results

[ 65%] Built target MagnumPrimitives
[ 65%] Compiling data resource file /Users/andriitytarenko/devel/habitat-root/habitat-sim/build/temp.macosx-10.14-x86_64-3.7/deps/magnum-plugins/src/MagnumPlugins/TinyGltfImporter/resource_TinyGltfImporter.cpp
Scanning dependencies of target TinyGltfImporter
[ 65%] Building CXX object deps/magnum-plugins/src/MagnumPlugins/TinyGltfImporter/CMakeFiles/TinyGltfImporter.dir/TinyGltfImporter.cpp.o
In file included from /Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumPlugins/TinyGltfImporter/TinyGltfImporter.cpp:71:
In file included from /Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/tiny_gltf.h:992:
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/./json.hpp:1378:9: error: static_assert failed "could not find from_json() method in T's namespace"
        static_assert(sizeof(BasicJsonType) == 0,
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/./json.hpp:1387:16: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::call<nlohmann::basic_json<std::map, std::vector,
      std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        return call(j, val, priority_tag<1> {});
               ^
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/./json.hpp:6861:9: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::operator()<nlohmann::basic_json<std::map, std::vector,
      std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        ::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
        ^
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/./json.hpp:9578:36: note: in instantiation of function template specialization 'nlohmann::adl_serializer<std::__1::basic_string_view<char, std::__1::char_traits<char>
      >, void>::from_json<const nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer> &, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        JSONSerializer<ValueType>::from_json(*this, ret);
                                   ^
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/./json.hpp:9841:16: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long
      long, unsigned long long, double, std::allocator, adl_serializer>::get<std::__1::basic_string_view<char, std::__1::char_traits<char> >, std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        return get<ValueType>();
               ^
/Library/Developer/CommandLineTools/usr/include/c++/v1/string:875:29: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator,
      adl_serializer>::operator basic_string_view<std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        {__self_view __sv = __t; return assign(__sv);}
                            ^
/Users/andriitytarenko/devel/habitat-root/habitat-sim/src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/tiny_gltf.h:1924:12: note: in instantiation of function template specialization 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>
      >::operator=<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, void>' requested here
    (*ret) = it.value();
           ^
1 error generated.
make[2]: *** [deps/magnum-plugins/src/MagnumPlugins/TinyGltfImporter/CMakeFiles/TinyGltfImporter.dir/TinyGltfImporter.cpp.o] Error 1
make[1]: *** [deps/magnum-plugins/src/MagnumPlugins/TinyGltfImporter/CMakeFiles/TinyGltfImporter.dir/all] Error 2

It seems like it is known issue of MagnumPlugins (its TinyGltf's json dependency) e.g.:
mosra/magnum-plugins#54
nlohmann/json#539
nlohmann/json#1140
nlohmann/json#917
@erikwijmans
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Contributor

mosra/magnum-plugins#54 says that the issue was fixed by updating to a newer version. Can you try updating the magnum-plugins submodule (you may also need to update the magnum and corrade submodues) to confirm the fix?

@titardrew
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@erikwijmans Well, I tried, but it did not help. The reason is that the commit which fixes this issue in magnum-plugins repo is more recent than latest releases in both magnum and corrade. In any case, even if that error disappears - another ones occur. What really helped to fix my issue is to make same changes as in commit that fixes mosra/magnum-plugins#54 , so I just replaced my json.hpp with one from commit
So I've just added

os.remove("src/deps/magnum-plugins/src/MagnumExternal/TinyGltf/json.hpp")

subprocess.call(
    ["wget", "https://raw.githubusercontent.com/mosra/magnum-plugins/b64e5b37e4cc2c3f95db16620ab1403378309d93/src/MagnumExternal/TinyGltf/json.hpp",
                "-P", "src/deps/magnum-plugins/src/MagnumExternal/TinyGltf"]
)

right after

if is_in_git:
    subprocess.check_call(
        ["git", "submodule", "update", "--init", "--recursive"]
    )

in build_extension method of setup.py and it now it works.
Thanks for your help!

@erikwijmans
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Glad you found a fix, we will update magnum in the not so distant future. Keeping this open until then.

@dhruvbatra
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Came here to report the same issue. We should really freeze the version/commit-id of magnum we use.

@dhruvbatra
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Even after ^^this fix by @titardrew, I am seeing the following error with viewer:

(base) dbatra-mbp:habitat-sim dbatra$ ./build/viewer ../data/scene_datasets/habitat-test-scenes/van-gogh-room.glb
Platform::GlfwApplication: warning: the executable is not a HiDPI-enabled app bundle
Illegal instruction: 4

Seems to be dying here:
https://github.com/mosra/magnum/blob/b937f3901e8dcb3f108769166fcf9d3be5a43fbc/src/Magnum/Platform/GlfwApplication.cpp#L124

@erikwijmans
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Came here to report the same issue. We should really freeze the version/commit-id of magnum we use.

We have frozen the version/commit-id of magnum. This appears to be an update to MacOS or clang that is causing this.

@erikwijmans
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I have now run into this issue also (going to update Magnum, just need to fix a few compile errors). I do not get the same issue as you @dhruvbatra, can you try a clean build (do rm -rf build then build).

CC: @msavva

@dhruvbatra
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Clean build, seeing same error.

@mosra
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mosra commented Apr 23, 2019

Even after ^^this fix by @titardrew, I am seeing the following error with viewer:

(base) dbatra-mbp:habitat-sim dbatra$ ./build/viewer ../data/scene_datasets/habitat-test-scenes/van-gogh-room.glb
Platform::GlfwApplication: warning: the executable is not a HiDPI-enabled app bundle
Illegal instruction: 4

Seems to be dying here:
https://github.com/mosra/magnum/blob/b937f3901e8dcb3f108769166fcf9d3be5a43fbc/src/Magnum/Platform/GlfwApplication.cpp#L124

This warning is unrelated (it just checked if the app was Retina-enabled and discovered it's not, which is not a critical problem). The "Illegal instruction" seems to be a mismatch between macOS versions it was compiled for and used on? Can you get a backtrace?

@msavva
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msavva commented May 3, 2019

I now also encountered the above build error after a MacOS and Xcode update. Build error is resolved using @titardrew 's fix but then I also encounter the Illegal instruction: 4 error message when running the interactive viewer. Backtrace below:

Process:               viewer [16196]
Path:                  /Users/USER/*/viewer
Identifier:            viewer
Version:               0
Code Type:             X86-64 (Native)
Parent Process:        zsh [43454]
Responsible:           viewer [16196]
User ID:               847061996

Date/Time:             2019-05-03 09:14:56.032 -0700
OS Version:            Mac OS X 10.14.4 (18E226)
Report Version:        12
Bridge OS Version:     3.0 (14Y677)
Anonymous UUID:        4FC35A73-E0CA-BAD4-7435-301231890324

Sleep/Wake UUID:       22F40FE1-FF31-4760-A803-DDD3C0E7A14E

Time Awake Since Boot: 210000 seconds
Time Since Wake:       8600 seconds

System Integrity Protection: enabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_INSTRUCTION (SIGILL)
Exception Codes:       0x0000000000000001, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Termination Signal:    Illegal instruction: 4
Termination Reason:    Namespace SIGNAL, Code 0x4
Terminating Process:   exc handler [16196]

Application Specific Information:
unknown pixel format

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   com.apple.AppKit              	0x00007fff34dfdcae -[NSCGLSurface flushRect:] + 4639
1   com.apple.AppKit              	0x00007fff34dfc9f4 NSCGLSurfaceFlush + 214
2   GLEngine                      	0x00007fff40965a4a glSwap_Exec + 186
3   com.apple.opengl              	0x00007fff4094774f CGLFlushDrawable + 59
4   com.apple.AppKit              	0x00007fff34756478 -[NSOpenGLContext flushBuffer] + 27
5   viewer                        	0x000000010c9052d7 _glfwRefreshContextAttribs + 1399 (context.c:614)
6   viewer                        	0x000000010c90a195 glfwCreateWindow + 501 (window.c:223)
7   viewer                        	0x000000010c7b2083 Magnum::Platform::GlfwApplication::tryCreate(Magnum::Platform::GlfwApplication::Configuration const&, Magnum::Platform::GlfwApplication::GLConfiguration const&) + 867
8   viewer                        	0x000000010c7b1b18 Magnum::Platform::GlfwApplication::tryCreate(Magnum::Platform::GlfwApplication::Configuration const&) + 72
9   viewer                        	0x000000010c7b08c0 Magnum::Platform::GlfwApplication::GlfwApplication(Magnum::Platform::GlfwApplication::Arguments const&, Magnum::Platform::GlfwApplication::Configuration const&) + 32 (GlfwApplication.cpp:106)
10  viewer                        	0x000000010c78d10e esp::gfx::Viewer::Viewer(Magnum::Platform::GlfwApplication::Arguments const&) + 270
11  viewer                        	0x000000010c7606bb main + 75 (viewer.cpp:9)
12  libdyld.dylib                 	0x00007fff6318c3d5 start + 1

Thread 1:
0   libsystem_pthread.dylib       	0x00007fff633793f0 start_wqthread + 0

Thread 2:
0   libsystem_pthread.dylib       	0x00007fff633793f0 start_wqthread + 0

Thread 3:
0   libsystem_pthread.dylib       	0x00007fff633793f0 start_wqthread + 0

Thread 4:: com.apple.NSEventThread
0   libsystem_kernel.dylib        	0x00007fff632c1266 semaphore_wait_trap + 10
1   libdispatch.dylib             	0x00007fff6313fbd9 _dispatch_sema4_wait + 16
2   libdispatch.dylib             	0x00007fff631403a0 _dispatch_semaphore_wait_slow + 98
3   com.apple.HIToolbox           	0x00007fff36009268 _BeginEventReceiptOnThread + 159
4   com.apple.AppKit              	0x00007fff343a1c90 _NSEventThread + 37
5   libsystem_pthread.dylib       	0x00007fff6337a2eb _pthread_body + 126
6   libsystem_pthread.dylib       	0x00007fff6337d249 _pthread_start + 66
7   libsystem_pthread.dylib       	0x00007fff6337940d thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x000000004c353535  rcx: 0x0000000000000000  rdx: 0x0000000000000000
  rdi: 0x0000000000000000  rsi: 0x000000001f08000c  rbp: 0x00007ffee34a35b0  rsp: 0x00007ffee34a31a0
   r8: 0x0000000000000000   r9: 0x0000000000000000  r10: 0x0000000000000000  r11: 0x0000000000000000
  r12: 0x00007ffa16457660  r13: 0x00007ffa1672d5a0  r14: 0x0000000110cf3000  r15: 0x0000000000000064
  rip: 0x00007fff34dfdcae  rfl: 0x0000000000010206  cr2: 0x0000000110d64000
  
Logical CPU:     2
Error Code:      0x00000000
Trap Number:     6


Binary Images:
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       0x10cbce000 -        0x10cbe1ff3 +libgflags.2.2.dylib (0) <61C3CD7C-84D4-306D-98AA-6DC41070E827> /usr/local/opt/gflags/lib/libgflags.2.2.dylib
       0x10e2d8000 -        0x10e2db047  libobjc-trampolines.dylib (756.2) <E0ADAED0-0649-399B-856E-29BA398C6433> /usr/lib/libobjc-trampolines.dylib
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    0x7fff631b2000 -     0x7fff631b7fff  libmacho.dylib (927.0.2) <D8515A20-ED7B-3B13-9ADA-4BD7E19E38C4> /usr/lib/system/libmacho.dylib
    0x7fff631b8000 -     0x7fff631baffb  libquarantine.dylib (86.220.1) <8A9BF971-DB7D-311A-B131-6C5025E82F8F> /usr/lib/system/libquarantine.dylib
    0x7fff631bb000 -     0x7fff631bcff7  libremovefile.dylib (45.200.2) <950036B7-B91E-3B5D-853C-8C551E5B6A32> /usr/lib/system/libremovefile.dylib
    0x7fff631bd000 -     0x7fff631d4ff3  libsystem_asl.dylib (356.200.4) <16F632AD-FADA-3DE9-85E8-EBC7D619A1DA> /usr/lib/system/libsystem_asl.dylib
    0x7fff631d5000 -     0x7fff631d5ff7  libsystem_blocks.dylib (73) <0CD6861B-EC5F-3345-9C24-B21EEB85E44F> /usr/lib/system/libsystem_blocks.dylib
    0x7fff631d6000 -     0x7fff6325dfff  libsystem_c.dylib (1272.250.1) <F3AA9047-EEDD-3D80-8CC1-023FB312EC8B> /usr/lib/system/libsystem_c.dylib
    0x7fff6325e000 -     0x7fff63261ffb  libsystem_configuration.dylib (963.250.1) <02C7A973-014A-31D7-B7D2-247D384CB0D2> /usr/lib/system/libsystem_configuration.dylib
    0x7fff63262000 -     0x7fff63265ff7  libsystem_coreservices.dylib (66) <4CF1C89B-FA6C-3DF3-B1F8-79F549849534> /usr/lib/system/libsystem_coreservices.dylib
    0x7fff63266000 -     0x7fff6326cfff  libsystem_darwin.dylib (1272.250.1) <6983A268-20F4-3F98-A3F5-D63848933B02> /usr/lib/system/libsystem_darwin.dylib
    0x7fff6326d000 -     0x7fff63273ff7  libsystem_dnssd.dylib (878.250.4) <9FC5724C-DD03-3E14-A6E1-2DD009D79E0A> /usr/lib/system/libsystem_dnssd.dylib
    0x7fff63274000 -     0x7fff632bfffb  libsystem_info.dylib (517.200.9) <F617D3CF-5A4A-36D0-8CBB-4A7C7CDB67AF> /usr/lib/system/libsystem_info.dylib
    0x7fff632c0000 -     0x7fff632e8ff7  libsystem_kernel.dylib (4903.251.3) <84EF0290-6CB5-36E5-A273-692A7E437B36> /usr/lib/system/libsystem_kernel.dylib
    0x7fff632e9000 -     0x7fff63334ff7  libsystem_m.dylib (3158.200.7) <33105665-CCC3-36D5-82C9-9B21730CB3DF> /usr/lib/system/libsystem_m.dylib
    0x7fff63335000 -     0x7fff63359fff  libsystem_malloc.dylib (166.251.2) <90DA09E3-1276-3FCF-8F5F-C9AA61AB9B6D> /usr/lib/system/libsystem_malloc.dylib
    0x7fff6335a000 -     0x7fff63364ff7  libsystem_networkextension.dylib (767.250.2) <4575D797-B793-3D18-9E93-8696CF0B133B> /usr/lib/system/libsystem_networkextension.dylib
    0x7fff63365000 -     0x7fff6336cfff  libsystem_notify.dylib (172.200.21) <679E9132-1A46-326E-9A11-D3FF9C86041C> /usr/lib/system/libsystem_notify.dylib
    0x7fff6336d000 -     0x7fff63376fef  libsystem_platform.dylib (177.250.1) <3CC59141-5365-3848-94C3-D65E6FCA1E74> /usr/lib/system/libsystem_platform.dylib
    0x7fff63377000 -     0x7fff63381ff7  libsystem_pthread.dylib (330.250.2) <4344198A-A1A3-3C52-97B4-F168D56E9789> /usr/lib/system/libsystem_pthread.dylib
    0x7fff63382000 -     0x7fff63385ff7  libsystem_sandbox.dylib (851.250.12) <66E91015-F62A-3365-BB81-AA88707E8F12> /usr/lib/system/libsystem_sandbox.dylib
    0x7fff63386000 -     0x7fff63388ff3  libsystem_secinit.dylib (30.220.1) <F054DCB0-68CE-35E7-8B8C-D648C42124EC> /usr/lib/system/libsystem_secinit.dylib
    0x7fff63389000 -     0x7fff63390ff3  libsystem_symptoms.dylib (820.257.1) <C8517F35-E9DA-3649-B07D-2B38349C6730> /usr/lib/system/libsystem_symptoms.dylib
    0x7fff63391000 -     0x7fff633a6fff  libsystem_trace.dylib (906.250.5) <AE77ACC7-488F-3AE1-BB0C-1ACFC7E1CE77> /usr/lib/system/libsystem_trace.dylib
    0x7fff633a8000 -     0x7fff633adffb  libunwind.dylib (35.4) <8F0BC197-B97C-3DDC-92B0-6A7D3CB72FD8> /usr/lib/system/libunwind.dylib
    0x7fff633ae000 -     0x7fff633ddff7  libxpc.dylib (1336.251.2) <49138829-09C8-355C-B558-97E070B84EC5> /usr/lib/system/libxpc.dylib

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 269476
    thread_create: 0
    thread_set_state: 234

VM Region Summary:
ReadOnly portion of Libraries: Total=405.2M resident=0K(0%) swapped_out_or_unallocated=405.2M(100%)
Writable regions: Total=112.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=112.5M(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Activity Tracing                   256K        1 
CoreAnimation                        4K        1 
CoreGraphics                         8K        1 
CoreUI image file                  344K        2 
Dispatch continuations            16.0M        1 
Foundation                           4K        1 
Kernel Alloc Once                    8K        1 
MALLOC                            85.6M       22 
MALLOC guard page                   32K        7 
Memory Tag 242                      12K        1 
STACK GUARD                       56.0M        5 
Stack                             10.0M        5 
VM_ALLOCATE                         76K        9 
__DATA                            37.3M      248 
__FONT_DATA                          4K        1 
__GLSLBUILTINS                    5176K        1 
__LINKEDIT                       223.8M        6 
__TEXT                           181.3M      242 
__UNICODE                          564K        1 
mapped file                       44.8M       13 
shared memory                      856K       11 
===========                     =======  ======= 
TOTAL                            662.1M      580 

Model: MacBookPro14,3, BootROM 190.0.0.0.0, 4 processors, Intel Core i7, 3.1 GHz, 16 GB, SMC 2.45f0
Graphics: kHW_IntelHDGraphics630Item, Intel HD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555Item, Radeon Pro 555, spdisplays_pcie_device, 2 GB
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x80AD, 0x483943434E4E4E434C47414C41522D4E5644
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x80AD, 0x483943434E4E4E434C47414C41522D4E5644
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x173), Broadcom BCM43xx 1.0 (7.77.61.2 AirPortDriverBrcmNIC-1305.8)
Bluetooth: Version 6.0.11f4, 3 services, 27 devices, 1 incoming serial ports
Network Service: USB 10/100/1000 LAN, Ethernet, en8
Network Service: Wi-Fi, AirPort, en0
USB Device: USB 3.0 Bus
USB Device: USB2.0 Hub
USB Device: 4-Port USB 2.0 Hub
USB Device: Hub
USB Device: Texas Instruments USBtoI2C Solution
USB Device: Hub
USB Device: Evoluent VerticalMouse 4
USB Device: Advantage2 Keyboard
USB Device: USB 2.0 BILLBOARD
USB Device: iBridge
USB Device: Yubikey 4 OTP+U2F+CCID
USB Device: USB3.0 Hub
USB Device: USB3.0 Card Reader
USB Device: 4-Port USB 3.0 Hub
USB Device: Hub
USB Device: Hub
USB Device: USB 10/100/1000 LAN
Thunderbolt Bus: MacBook Pro, Apple Inc., 39.2
Thunderbolt Bus: MacBook Pro, Apple Inc., 39.2

@msavva msavva mentioned this issue May 9, 2019
Merged
11 tasks
@dhruvbatra
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Contributor

I believe this issue should be fixed. If so, please close @titardrew

@titardrew
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@dhruvbatra, sure. Thanks for this fix!

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5 participants
@mosra @msavva @dhruvbatra @erikwijmans @titardrew