diff --git a/packages/expo-cli/src/commands/eject/clearNativeFolder.ts b/packages/expo-cli/src/commands/eject/clearNativeFolder.ts
index 971b9b8ae3..a312936d57 100644
--- a/packages/expo-cli/src/commands/eject/clearNativeFolder.ts
+++ b/packages/expo-cli/src/commands/eject/clearNativeFolder.ts
@@ -104,6 +104,9 @@ export async function promptToClearMalformedNativeProjectsAsync(
       initial: true,
     }))
   ) {
+    if (isNonInteractive()) {
+      Log.warn(`${message}, project files will be cleared and reinitialized.`);
+    }
     await clearNativeFolder(projectRoot, platforms);
   } else {
     // Warn the user that the process may fail.