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bcftools exits with an index-not found error when parsing bcftools output from version 1.3.1, this is caused by certain columns in the PSC output to be missing.
> multiqc testlogs/ /// MultiQC 🔍 | v1.13| multiqc | Search path : /Users/max/testlogs| searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 1/1╭──────────────────────────────────── Oops! The 'bcftools' MultiQC module broke... ────────────────────────────────────╮│ Please copy this log and report it at https://github.com/ewels/MultiQC/issues ││ Please attach a file that triggers the error. The last file found was: testlogs/bcftools_stats_output.txt ││ ││ Traceback (most recent call last): ││ File "/usr/local/lib/python3.9/site-packages/multiqc/multiqc.py", line 654, in run ││ output = mod() ││ File "/usr/local/lib/python3.9/site-packages/multiqc/modules/bcftools/bcftools.py", line 40, in __init__ ││ n["stats"] = self.parse_bcftools_stats() ││ File "/usr/local/lib/python3.9/site-packages/multiqc/modules/bcftools/stats.py", line 121, in parse_bcftools_stats ││ nMissing = int(s[13].strip()) ││ IndexError: list index out of range ││ │╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯| multiqc | No analysis results found. Cleaning up..| multiqc | MultiQC complete
The text was updated successfully, but these errors were encountered:
Description of bug
bcftools exits with an index-not found error when parsing bcftools output from version 1.3.1, this is caused by certain columns in the PSC output to be missing.
File that triggers the error
bcftools_stats_output.txt
MultiQC Error log
The text was updated successfully, but these errors were encountered: