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Labrador Version History

Labrador v0.3 (16 March 2021)

Labrador v0.3 includes a range of updates that have mostly been contributed by @darogan and @StevenWingett who have been using Labrador at other centres beyond the fair shores of the Babraham Institute.

  • Updated documentation on how to run Labrador using a webserver inside a Docker container
  • Improved sendmail setup - Updated instructions to use a new config file to setup sendmail.
  • Added Docker container instructions - Updated the documentation to provide instructions on how to run Labrador inside a Docker container.
  • Fix invalid filenames before writing SRA links file
  • Fix the data dir permissions problem
  • Make dataset lookups work for GEO accessions again
  • Make new project directories get 777 permissions
  • Symlink based failure fixes
  • Conditional statements wrapped around df check and logo, plus removed custom images from img
  • Simplified and tidied up the use of config variables for data and server locations
  • Add a conditional for testing the storage situation on local server
  • Implemented samtools path check, replace zcat with gunzip -c for OSX compatibility
  • Fixed minor variable formatting in header.php
  • Added a samtools path variable for setting in the config if required
  • Remove hard coded links to be more generic for main Labrador repo
  • Added PHPExcel and ParseDown submodules
  • Added support for markdown reports
  • PHP7 Compatability updates to split function in files.php, plus minor formatting
  • Added PDF viewer to reports
  • Base version customised for generic NGS projects
  • Cleaned up datasets page a bit.
  • Added last modified dates to homepage and datasets pages.
  • Fixed datatables error on homepage.
  • Got SRA links modal to work with selected table rows.
  • Added option to save file list to server.
  • Removed links to 'processing' page. Made javascript SRA links download. Added datatables.
  • Updated mysql_ to mysqli_

Labrador v0.2 (22 January 2014)

New Features

  • Custom accession numbers
  • Labrador now checks for available updates
  • Enter an e-mail address in the search bar to show projects associated with that user Updates
  • Number of e-mails sent when adding projects and datasets cut down if you're an admin
  • Documentation - described how to set up Sendmail for the PHP mail() function

Bug fixes

  • You can now add new papers whilst editing an existing project
  • Number of new datasets in e-mail notifications is now correct
  • Retrieving an accession when editing a project no longer warns you that it exists
  • Minor formatting fixes