From b6950e0fd4617435ff7892edc81fef90f850a143 Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Fri, 18 Oct 2024 13:29:13 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 32 + data-truth/README.md | 12 +- data-truth/plots/Cases.svg | 1817 ++++++++-------- data-truth/plots/Deaths.svg | 1600 +++++++------- data-truth/plots/revisions-Cases.svg | 1904 +++++++---------- data-truth/plots/revisions-Deaths.svg | 1902 +++++++--------- .../plots/revisions-Hospitalizations.svg | 11 +- 7 files changed, 3221 insertions(+), 4057 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index be1df3285..d3aeac035 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -15276,3 +15276,35 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub- - The following locations are missing: ['Austria', 'Belgium', 'Denmark', 'France', 'Iceland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Netherlands', 'Norway']. +Latest check of truth data: 2024-10-18 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2024-10-12: + +- The following locations are missing: ['Denmark', 'France', 'Italy', 'Malta', 'Netherlands', 'Slovenia']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Hospitalizations.csv' at 2024-10-12: + +- The following locations are missing: ['Austria', 'Belgium', 'Bulgaria', 'Croatia', 'Denmark', 'France', 'Iceland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Netherlands', 'Norway', 'Poland', 'Romania', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2024-10-12: + +- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2024-10-12: + +- The following locations are missing: ['Denmark', 'France', 'Italy', 'Malta']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Hospitalizations.csv' at 2024-10-12: + +- The following locations are missing: ['Austria', 'Belgium', 'Bulgaria', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Iceland', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Poland', 'Portugal', 'Romania', 'Slovakia', 'Slovenia', 'Sweden']. + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2024-10-12: + +- The following locations are missing: ['Austria', 'Belgium', 'Denmark', 'France', 'Iceland', 'Italy', 'Luxembourg', 'Netherlands', 'Norway']. + diff --git a/data-truth/README.md b/data-truth/README.md index 23cd405b0..71c58e1a5 100644 --- a/data-truth/README.md +++ b/data-truth/README.md @@ -77,11 +77,10 @@ indicating data expecting to be substanially revised. Ireland, Italy, Liechtenstein, Lithuania, Malta, Poland, Portugal, Romania, Slovakia, Slovenia, Sweden -- **Data warning!** Recent missing data for cases in: Belgium, Denmark, - France, Italy, Liechtenstein, and Luxembourg +- **Data warning!** Recent missing data for cases in: Denmark, France, + Italy, and Malta -- **Data warning!** Recent missing data for deaths in: Denmark, Italy, - and Liechtenstein +- **Data warning!** Recent missing data for deaths in: Denmark and Italy We further evaluate forecasts of cases and deaths against data provided [ECDC](https://www.ecdc.europa.eu/), which we recommend using as the @@ -137,6 +136,11 @@ account the truncation of the data. The latest case/death data is plotted below, with the dashed line indicating data expecting to be substanially revised. + ## `geom_line()`: Each group consists of only one observation. + ## ℹ Do you need to adjust the group aesthetic? + ## `geom_line()`: Each group consists of only one observation. + ## ℹ Do you need to adjust the group aesthetic? + ![Plot of cases](plots/Cases.svg) ![Plot of deaths](plots/Deaths.svg) ## Additional data sources diff --git a/data-truth/plots/Cases.svg b/data-truth/plots/Cases.svg index 85c2b845a..8129c2a11 100644 --- a/data-truth/plots/Cases.svg +++ b/data-truth/plots/Cases.svg @@ -21,1206 +21,1201 @@ - + - - + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - + + - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + - - + + - - - - - - - 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