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environment.yaml
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name: orphan_prediction
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=py36h5fab9bb_1001
- aiohttp=3.7.4=py36h8f6f2f9_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=3.0.1=py_1000
- attrs=20.3.0=pyhd3deb0d_0
- bcrypt=3.2.0=py36h8f6f2f9_1
- boost-cpp=1.74.0=hc6e9bd1_2
- brotlipy=0.7.0=py36h8f6f2f9_1001
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2020.12.5=ha878542_0
- cairo=1.16.0=h6cf1ce9_1008
- cairocffi=1.2.0=pyhd8ed1ab_0
- cairosvg=2.5.2=pyhd8ed1ab_0
- certifi=2020.12.5=py36h5fab9bb_1
- cffi=1.14.5=py36hc120d54_0
- chardet=4.0.0=py36h5fab9bb_1
- click=7.1.2=pyh9f0ad1d_0
- colorama=0.4.4=pyh9f0ad1d_0
- coloredlogs=15.0=py36h5fab9bb_0
- colormath=3.0.0=py_2
- commonmark=0.9.1=py_0
- configargparse=1.4=pyhd8ed1ab_0
- cryptography=3.4.7=py36hb60f036_0
- cssselect2=0.2.1=pyh9f0ad1d_1
- cufflinks=2.2.1=py36_2
- curl=7.76.0=h979ede3_0
- cycler=0.10.0=py_2
- dataclasses=0.7=pyhe4b4509_6
- decorator=5.0.5=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dill=0.3.3=pyhd8ed1ab_0
- dropbox=11.4.1=pyhd8ed1ab_0
- filechunkio=1.8=py_2
- fontconfig=2.13.1=hba837de_1004
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- ftputil=5.0.1=pyhd8ed1ab_0
- future=0.18.2=py36h5fab9bb_3
- gdk-pixbuf=2.42.4=h04a7f16_2
- gettext=0.19.8.1=h0b5b191_1005
- graphite2=1.3.13=h58526e2_1001
- harfbuzz=2.8.0=h83ec7ef_1
- hdf5=1.10.5=nompi_h5b725eb_1114
- hisat2=2.2.1=h1b792b2_3
- html5lib=1.1=pyh9f0ad1d_0
- htslib=1.10.2=hd3b49d5_1
- humanfriendly=9.1=py36h5fab9bb_0
- icu=68.1=h58526e2_0
- idna=2.10=pyh9f0ad1d_0
- idna_ssl=1.1.0=py36h9f0ad1d_1001
- importlib-metadata=3.10.0=py36h5fab9bb_0
- importlib_metadata=3.10.0=hd8ed1ab_0
- importlib_resources=5.1.2=py36h5fab9bb_0
- jinja2=2.11.3=pyh44b312d_0
- jpeg=9d=h36c2ea0_0
- kiwisolver=1.3.1=py36h605e78d_1
- krb5=1.17.2=h926e7f8_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- ldc=1.20.0=h9a1ace1_1
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.76.0=hc4aaa36_0
- libdeflate=1.6=h516909a_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=9.3.0=hff62375_18
- libgfortran5=9.3.0=hff62375_18
- libglib=2.68.0=h3e27bee_2
- libgomp=9.3.0=h2828fa1_18
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_18
- libtiff=4.2.0=hdc55705_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=h72842e0_3
- lz4-c=1.9.3=h9c3ff4c_0
- lzstring=1.0.4=py_1001
- markdown=3.3.4=pyhd8ed1ab_0
- markupsafe=1.1.1=py36h8f6f2f9_3
- matplotlib-base=3.3.4=py36hd391965_0
- multidict=5.1.0=py36h8f6f2f9_1
- multiqc=1.10.1=py_0
- ncbi-ngs-sdk=2.11.0=hff44eed_0
- ncurses=6.2=h58526e2_4
- networkx=2.5=py_0
- numpy=1.19.5=py36h2aa4a07_1
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hf7af979_0
- openssl=1.1.1k=h7f98852_0
- orfipy=0.0.3=py36hae55d0a_1
- ossuuid=1.6.2=hf484d3e_1000
- pandas=1.1.5=py36h284efc9_0
- pango=1.48.4=hb8ff022_0
- paramiko=2.7.2=pyh9f0ad1d_0
- patsy=0.5.1=py_0
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-mime-base64=3.15=pl526_1
- perl-parent=0.236=pl526_1
- perl-uri=1.76=pl526_0
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xsloader=0.24=pl526_0
- pillow=8.1.2=py36ha6010c0_1
- pip=21.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- ply=3.11=py_1
- psutil=5.8.0=py36h8f6f2f9_1
- pthread-stubs=0.4=h36c2ea0_1001
- pyahocorasick=1.4.0=py36h8c4c3a4_2
- pycparser=2.20=pyh9f0ad1d_2
- pyfastx=0.8.2=py36h30a8e3e_1
- pygments=2.8.1=pyhd8ed1ab_0
- pynacl=1.4.0=py36h8f6f2f9_2
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyphen=0.10.0=pyhd8ed1ab_0
- pyrpipe=0.0.5=py_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py36h5fab9bb_3
- python=3.6.13=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.6=1_cp36m
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.4.1=py36h8f6f2f9_0
- ratelimiter=1.2.0=py_1002
- readline=8.0=he28a2e2_2
- requests=2.25.1=pyhd3deb0d_0
- rich=10.1.0=py36h5fab9bb_0
- sambamba=0.8.0=h984e79f_0
- samtools=1.10=h2e538c0_3
- scipy=1.5.3=py36h9e8f40b_0
- seaborn=0.11.1=hd8ed1ab_1
- seaborn-base=0.11.1=pyhd8ed1ab_1
- setuptools=49.6.0=py36h5fab9bb_3
- simplejson=3.17.2=py36h8f6f2f9_2
- six=1.15.0=pyh9f0ad1d_0
- spectra=0.0.11=py_1
- sqlite=3.35.4=h74cdb3f_0
- sra-tools=2.10.9=pl526haddd2b5_0
- statsmodels=0.12.2=py36h92226af_0
- stone=3.2.1=pyhd8ed1ab_0
- stringtie=2.1.5=h978d192_1
- tabulate=0.8.9=pyhd8ed1ab_0
- tinycss2=1.1.0=pyhd8ed1ab_0
- tk=8.6.10=h21135ba_1
- tornado=6.1=py36h8f6f2f9_1
- typing-extensions=3.7.4.3=0
- typing_extensions=3.7.4.3=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- weasyprint=52.4=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- wrapt=1.12.1=py36h8f6f2f9_3
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.0=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.6.3=py36h8f6f2f9_1
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- alabaster==0.7.12
- amply==0.1.4
- babel==2.9.0
- biopython==1.78
- datrie==0.8.2
- docutils==0.16
- drmaa==0.7.9
- filelock==3.0.12
- gitdb==4.0.7
- gitpython==3.1.14
- hypothesis==6.8.9
- imagesize==1.2.0
- iniconfig==1.1.1
- ipython-genutils==0.2.0
- jsonschema==3.2.0
- jupyter-core==4.7.1
- marshmallow==3.11.1
- marshmallow-dataclass==8.4.1
- msgpack==1.0.2
- mypy-extensions==0.4.3
- nbformat==5.1.3
- packaging==20.9
- pluggy==0.13.1
- portcullis==1.2.0
- pulp==2.4
- py==1.10.0
- pyfaidx==0.5.9.5
- pyrsistent==0.17.3
- pysam==0.16.0.1
- pytest==6.2.3
- python-rapidjson==1.0
- smart-open==5.0.0
- smmap==4.0.0
- snakemake==6.1.1
- snowballstemmer==2.1.0
- sortedcontainers==2.3.0
- sphinx==3.5.3
- sphinx-rtd-theme==0.5.2
- sphinxcontrib-applehelp==1.0.2
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==1.0.3
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.4
- sqlalchemy==1.3.24
- sqlalchemy-utils==0.36.8
- toml==0.10.2
- toposort==1.6
- traitlets==4.3.3
- typeguard==2.12.0
- typing-inspect==0.6.0