DESCRIPTION

Package: cerebroApp
Title: Interactive visualization of scRNA-seq data with Cerebro
Version: 1.3.1
Authors@R:
  person("Roman", "Hillje", email = "roman.hillje@googlemail.com", role = c("aut", "cre"))
Description: Cerebro is a Shiny application that allows to interactively visualize scRNA-seq data. Data must be exported from a Seurat object using the helper functions which also allows to perform analysis such as pathway enrichment analysis based on marker genes of samples and/or clusters.
URL: https://romanhaa.github.io/cerebroApp/index.html, https://github.com/romanhaa/cerebroApp
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends: R (>= 3.5.1)
biocViews:
  FeatureExtraction,
  GeneExpression,
  GUI,
  SingleCell,
  Software,
  Technology,
  Transcription,
  Transcriptomics,
  Visualization
Imports:
  ape (>= 5.4),
  biomaRt (>= 2.38.0),
  colourpicker (>= 1.0),
  dplyr (>= 1.0.0),
  DT (>= 0.14.0),
  future.apply (>= 1.1.0),
  ggplot2 (>= 3.2.1),
  glue (>= 1.4.0),
  GSVA (>= 1.30.0),
  httr (>= 1.4.0),
  igraph,
  Matrix (>= 1.2),
  methods,
  msigdbr (>= 6.2.1),
  pbapply (>= 1.4),
  plotly (>= 4.9.0),
  qvalue (>= 2.14.0),
  R6 (>= 2.4.0),
  readr (>= 1.3.1),
  rlang (>= 0.4.2),
  scales (>= 1.1.0),
  shiny (>= 1.3.2),
  shinycssloaders (>= 1.0.0),
  shinydashboard (>= 0.7.1),
  shinyFiles (>= 0.8.0),
  shinyjs (>= 1.1),
  shinyWidgets (>= 0.5.0),
  stats,
  tibble (>= 3.0.0),
  tidyr (>= 1.1.0),
  tidyselect(>= 1.1.0),
  utils,
  viridis (>= 0.5.1)
Suggests:
  formattable (>= 0.2.0.1),
  ggtree (>= 1.14.6),
  knitr,
  monocle (>= 2.10),
  reshape2 (>= 1.4.3),
  rmarkdown,
  Seurat (>= 3.0.0)
VignetteBuilder: knitr