new_ifer_nuclei.json

{
    "1": {
        "category": "extraction",
        "function": "select_channel_from_raw",
        "parameter_values": {
            "chan": 2
        },
        "parent": 0
    },
    "2": {
        "category": "preprocessing",
        "function": "min_max_intensity_normalization",
        "parent": 1
    },
    "3": {
        "category": "preprocessing",
        "function": "median_filter_slice_by_slice",
        "parameter_values": {
            "size": 4
        },
        "parent": 2
    },
    "4": {
        "category": "preprocessing",
        "function": "image_smoothing_gaussian_slice_by_slice",
        "parameter_values": {
            "sigma": 1.34
        },
        "parent": 3
    },
    "5": {
        "category": "core",
        "function": "apply_log_li_threshold",
        "parameter_values": {
            "thresh_max": 1.0,
            "thresh_min": 0.1,
            "threshold_factor": 0.9
        },
        "parent": 4
    },
    "6": {
        "category": "postprocessing",
        "function": "hole_filling",
        "parameter_values": {
            "fill_2d": true,
            "hole_max": 25,
            "hole_min": 0
        },
        "parent": 5
    },
    "7": {
        "category": "postprocessing",
        "function": "size_filter_2D",
        "parameter_values": {
            "min_size": 225
        },
        "parent": 6
    }
}